jimczi commented on code in PR #12582:
URL: https://github.com/apache/lucene/pull/12582#discussion_r1334738549


##########
lucene/core/src/java/org/apache/lucene/codecs/lucene99/Lucene99ScalarQuantizedVectorsWriter.java:
##########
@@ -0,0 +1,851 @@
+/*
+ * Licensed to the Apache Software Foundation (ASF) under one or more
+ * contributor license agreements.  See the NOTICE file distributed with
+ * this work for additional information regarding copyright ownership.
+ * The ASF licenses this file to You under the Apache License, Version 2.0
+ * (the "License"); you may not use this file except in compliance with
+ * the License.  You may obtain a copy of the License at
+ *
+ *     http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+
+package org.apache.lucene.codecs.lucene99;
+
+import static 
org.apache.lucene.codecs.lucene99.Lucene99ScalarQuantizedVectorsFormat.DIRECT_MONOTONIC_BLOCK_SHIFT;
+import static 
org.apache.lucene.codecs.lucene99.Lucene99ScalarQuantizedVectorsFormat.calculateDefaultQuantile;
+import static org.apache.lucene.search.DocIdSetIterator.NO_MORE_DOCS;
+
+import java.io.IOException;
+import java.util.ArrayList;
+import java.util.List;
+import org.apache.lucene.codecs.CodecUtil;
+import org.apache.lucene.codecs.KnnFieldVectorsWriter;
+import org.apache.lucene.codecs.KnnVectorsReader;
+import org.apache.lucene.codecs.KnnVectorsWriter;
+import org.apache.lucene.codecs.lucene90.IndexedDISI;
+import org.apache.lucene.codecs.perfield.PerFieldKnnVectorsFormat;
+import org.apache.lucene.index.DocIDMerger;
+import org.apache.lucene.index.DocsWithFieldSet;
+import org.apache.lucene.index.FieldInfo;
+import org.apache.lucene.index.FloatVectorValues;
+import org.apache.lucene.index.IndexFileNames;
+import org.apache.lucene.index.MergeState;
+import org.apache.lucene.index.SegmentWriteState;
+import org.apache.lucene.index.Sorter;
+import org.apache.lucene.index.VectorEncoding;
+import org.apache.lucene.index.VectorSimilarityFunction;
+import org.apache.lucene.search.DocIdSetIterator;
+import org.apache.lucene.store.IndexInput;
+import org.apache.lucene.store.IndexOutput;
+import org.apache.lucene.util.ArrayUtil;
+import org.apache.lucene.util.IOUtils;
+import org.apache.lucene.util.RamUsageEstimator;
+import org.apache.lucene.util.ScalarQuantizer;
+import org.apache.lucene.util.VectorUtil;
+import org.apache.lucene.util.packed.DirectMonotonicWriter;
+
+/**
+ * Writes quantized vector values and metadata to index segments.
+ *
+ * @lucene.experimental
+ */
+public final class Lucene99ScalarQuantizedVectorsWriter implements 
QuantizedVectorsWriter {
+
+  private static final long BASE_RAM_BYTES_USED =
+      
RamUsageEstimator.shallowSizeOfInstance(Lucene99ScalarQuantizedVectorsWriter.class);
+
+  private static final float QUANTIZATION_RECOMPUTE_LIMIT = 32;
+  private final SegmentWriteState segmentWriteState;
+  private final IndexOutput meta, quantizedVectorData;
+  private final Float quantile;
+  private final List<QuantizationVectorWriter> fields = new ArrayList<>();
+
+  private boolean finished;
+
+  Lucene99ScalarQuantizedVectorsWriter(SegmentWriteState state, Float 
quantile) throws IOException {
+    this.quantile = quantile;
+    segmentWriteState = state;
+    String metaFileName =
+        IndexFileNames.segmentFileName(
+            state.segmentInfo.name,
+            state.segmentSuffix,
+            
Lucene99ScalarQuantizedVectorsFormat.QUANTIZED_VECTOR_META_EXTENSION);
+
+    String quantizedVectorDataFileName =
+        IndexFileNames.segmentFileName(
+            state.segmentInfo.name,
+            state.segmentSuffix,
+            
Lucene99ScalarQuantizedVectorsFormat.QUANTIZED_VECTOR_DATA_EXTENSION);
+
+    boolean success = false;
+    try {
+      meta = state.directory.createOutput(metaFileName, state.context);
+      quantizedVectorData =
+          state.directory.createOutput(quantizedVectorDataFileName, 
state.context);
+
+      CodecUtil.writeIndexHeader(
+          meta,
+          Lucene99ScalarQuantizedVectorsFormat.META_CODEC_NAME,
+          Lucene99ScalarQuantizedVectorsFormat.VERSION_CURRENT,
+          state.segmentInfo.getId(),
+          state.segmentSuffix);
+      CodecUtil.writeIndexHeader(
+          quantizedVectorData,
+          
Lucene99ScalarQuantizedVectorsFormat.QUANTIZED_VECTOR_DATA_CODEC_NAME,
+          Lucene99ScalarQuantizedVectorsFormat.VERSION_CURRENT,
+          state.segmentInfo.getId(),
+          state.segmentSuffix);
+      success = true;
+    } finally {
+      if (success == false) {
+        IOUtils.closeWhileHandlingException(this);
+      }
+    }
+  }
+
+  @Override
+  public KnnFieldVectorsWriter<float[]> addField(FieldInfo fieldInfo) throws 
IOException {
+    if (fieldInfo.getVectorEncoding() != VectorEncoding.FLOAT32) {
+      throw new IllegalArgumentException(
+          "Only float32 vector fields are supported for quantization");
+    }
+    float quantile =
+        this.quantile == null
+            ? calculateDefaultQuantile(fieldInfo.getVectorDimension())
+            : this.quantile;
+    QuantizationVectorWriter newField = 
QuantizationVectorWriter.create(fieldInfo, quantile);
+    fields.add(newField);
+    return newField;
+  }
+
+  @Override
+  public void flush(int maxDoc, Sorter.DocMap sortMap) throws IOException {
+    for (QuantizationVectorWriter field : fields) {
+      field.finish();
+      if (sortMap == null) {
+        writeField(field, maxDoc);
+      } else {
+        writeSortingField(field, maxDoc, sortMap);
+      }
+    }
+  }
+
+  @Override
+  public void finish() throws IOException {
+    if (finished) {
+      throw new IllegalStateException("already finished");
+    }
+    finished = true;
+    if (meta != null) {
+      // write end of fields marker
+      meta.writeInt(-1);
+      CodecUtil.writeFooter(meta);
+    }
+    if (quantizedVectorData != null) {
+      CodecUtil.writeFooter(quantizedVectorData);
+    }
+  }
+
+  @Override
+  public long ramBytesUsed() {
+    long total = BASE_RAM_BYTES_USED;
+    for (QuantizationVectorWriter field : fields) {
+      total += field.ramBytesUsed();
+    }
+    return total;
+  }
+
+  private void writeField(QuantizationVectorWriter fieldData, int maxDoc) 
throws IOException {
+    long quantizedVectorDataOffset = 
quantizedVectorData.alignFilePointer(Float.BYTES);
+    writeQuantizedVectors(fieldData);
+    long quantizedVectorDataLength =
+        quantizedVectorData.getFilePointer() - quantizedVectorDataOffset;
+
+    writeMeta(
+        fieldData.fieldInfo,
+        maxDoc,
+        quantizedVectorDataOffset,
+        quantizedVectorDataLength,
+        fieldData.getMinQuantile(),
+        fieldData.getMaxQuantile(),
+        fieldData.docsWithField);
+  }
+
+  private void writeQuantizedVectors(QuantizationVectorWriter fieldData) 
throws IOException {
+    ScalarQuantizer scalarQuantizer = fieldData.createQuantizer();
+    byte[] vector = new byte[fieldData.dim];
+    for (float[] v : fieldData.floatVectors) {
+      scalarQuantizer.quantize(v, vector);
+      quantizedVectorData.writeBytes(vector, vector.length);
+      float offsetCorrection =
+          scalarQuantizer.calculateVectorOffset(vector, 
fieldData.vectorSimilarityFunction);
+      quantizedVectorData.writeInt(Float.floatToIntBits(offsetCorrection));
+    }
+  }
+
+  private ScalarQuantizationState writeSortingField(
+      QuantizationVectorWriter fieldData, int maxDoc, Sorter.DocMap sortMap) 
throws IOException {
+    final int[] docIdOffsets = new int[sortMap.size()];
+    int offset = 1; // 0 means no vector for this (field, document)
+    DocIdSetIterator iterator = fieldData.docsWithField.iterator();
+    for (int docID = iterator.nextDoc();
+        docID != DocIdSetIterator.NO_MORE_DOCS;
+        docID = iterator.nextDoc()) {
+      int newDocID = sortMap.oldToNew(docID);
+      docIdOffsets[newDocID] = offset++;
+    }
+    DocsWithFieldSet newDocsWithField = new DocsWithFieldSet();
+    final int[] ordMap = new int[offset - 1]; // new ord to old ord
+    final int[] oldOrdMap = new int[offset - 1]; // old ord to new ord
+    int ord = 0;
+    int doc = 0;
+    for (int docIdOffset : docIdOffsets) {
+      if (docIdOffset != 0) {
+        ordMap[ord] = docIdOffset - 1;
+        oldOrdMap[docIdOffset - 1] = ord;
+        newDocsWithField.add(doc);
+        ord++;
+      }
+      doc++;
+    }
+
+    // write vector values
+    long vectorDataOffset = quantizedVectorData.alignFilePointer(Float.BYTES);
+    long quantizedVectorDataOffset = writeSortedQuantizedVectors(fieldData, 
ordMap);
+    long quantizedVectorLength = quantizedVectorData.getFilePointer() - 
vectorDataOffset;
+
+    writeMeta(
+        fieldData.fieldInfo,
+        maxDoc,
+        quantizedVectorDataOffset,
+        quantizedVectorLength,
+        fieldData.minQuantile,
+        fieldData.maxQuantile,
+        newDocsWithField);
+    return new ScalarQuantizationState(fieldData.minQuantile, 
fieldData.maxQuantile);
+  }
+
+  private long writeSortedQuantizedVectors(QuantizationVectorWriter fieldData, 
int[] ordMap)
+      throws IOException {
+    long vectorDataOffset = quantizedVectorData.alignFilePointer(Float.BYTES);
+    ScalarQuantizer scalarQuantizer = fieldData.createQuantizer();
+    byte[] vector = new byte[fieldData.dim];
+    for (int ordinal : ordMap) {
+      float[] v = fieldData.floatVectors.get(ordinal);
+      scalarQuantizer.quantize(v, vector);
+      quantizedVectorData.writeBytes(vector, vector.length);
+      float offsetCorrection =
+          scalarQuantizer.calculateVectorOffset(vector, 
fieldData.vectorSimilarityFunction);
+      quantizedVectorData.writeInt(Float.floatToIntBits(offsetCorrection));
+    }
+    return vectorDataOffset;
+  }
+
+  @Override
+  public ScalarQuantizationState mergeQuantiles(FieldInfo fieldInfo, 
MergeState mergeState)
+      throws IOException {
+    if (fieldInfo.getVectorEncoding().equals(VectorEncoding.FLOAT32) == false) 
{
+      return null;
+    }
+    float quantile =
+        this.quantile == null
+            ? calculateDefaultQuantile(fieldInfo.getVectorDimension())
+            : this.quantile;
+    return mergeAndRecalculateQuantiles(mergeState, fieldInfo, quantile);
+  }
+
+  @Override
+  public IndexInput mergeOneField(
+      FieldInfo fieldInfo, MergeState mergeState, ScalarQuantizationState 
mergedQuantizationState)
+      throws IOException {

Review Comment:
   Quantisation as a codec makes sense to me but not as an additive layer on 
top of the HNSW one. If we want to follow this path I think we need to separate 
the concern and make another codec responsible for writing the flat index in 
HNSW. That's your suggestion below and I think it's much cleaner.
   The question is whether we want to generalise the feature on the first 
attempt. We could also start by adding a quantization option inlined with the 
HNSW codec.



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