Sounds like things will be ok. Matt.
From: Moataz Assem <[email protected]<mailto:[email protected]>> Date: Tuesday, February 26, 2019 at 9:32 AM To: Matt Glasser <[email protected]<mailto:[email protected]>>, "[email protected]<mailto:[email protected]>" <[email protected]<mailto:[email protected]>> Subject: RE: [HCP-Users] structural QC and medial wall Hi Matt, Figures attached. Looks like for issue (1), fig3 shows that the cortical ribbon is included in the native FS ROI… while for issue (2), fig 4 shows that the ventricle error is not included. Moataz From: Glasser, Matthew [mailto:[email protected]] Sent: 26 February 2019 00:42 To: Moataz Assem <[email protected]<mailto:[email protected]>>; [email protected]<mailto:[email protected]> Subject: Re: [HCP-Users] structural QC and medial wall What does the FreeSurfer ROI look like? ${StudyFolder}/${Subject}/MNINonLinear/Native/${Subject}.${Hemisphere}.roi.native.shape.gii? Matt. From: <[email protected]<mailto:[email protected]>> on behalf of Moataz Assem <[email protected]<mailto:[email protected]>> Date: Monday, February 25, 2019 at 9:48 AM To: "[email protected]<mailto:[email protected]>" <[email protected]<mailto:[email protected]>> Subject: [HCP-Users] structural QC and medial wall Hi, I have got a couple of questions about surface segmentation for cortex near the medial wall. I am attaching a couple of figs from structural data we collected using the HCP protocols. 1) In fig1 attached, the cross hair (on volume) point to a part of the cortical ribbon while its corresponding blue dot on the surface lies “inside” the medial wall. Does that mean those voxels are excluded from further analysis (i.e. are corresponding functional voxels excluded)? Or is the medial wall there just for visual purposes. 2) In fig 2 attached, there appears to be a mistake in the lateral ventricle where the choroid plexus (?) is misidentified as part of the cortical ribbon. Again the blue spot on the surface is within the medial wall. Would that mean this bit is excluded or will get “interpolated” somewhere? Thanks Moataz _______________________________________________ HCP-Users mailing list [email protected]<mailto:[email protected]> http://lists.humanconnectome.org/mailman/listinfo/hcp-users ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
