What does the FreeSurfer ROI look like?
${StudyFolder}/${Subject}/MNINonLinear/Native/${Subject}.${Hemisphere}.roi.native.shape.gii?
Matt.
From:
<[email protected]<mailto:[email protected]>>
on behalf of Moataz Assem
<[email protected]<mailto:[email protected]>>
Date: Monday, February 25, 2019 at 9:48 AM
To: "[email protected]<mailto:[email protected]>"
<[email protected]<mailto:[email protected]>>
Subject: [HCP-Users] structural QC and medial wall
Hi,
I have got a couple of questions about surface segmentation for cortex near the
medial wall. I am attaching a couple of figs from structural data we collected
using the HCP protocols.
1) In fig1 attached, the cross hair (on volume) point to a part of the
cortical ribbon while its corresponding blue dot on the surface lies “inside”
the medial wall. Does that mean those voxels are excluded from further analysis
(i.e. are corresponding functional voxels excluded)? Or is the medial wall
there just for visual purposes.
2) In fig 2 attached, there appears to be a mistake in the lateral
ventricle where the choroid plexus (?) is misidentified as part of the cortical
ribbon. Again the blue spot on the surface is within the medial wall. Would
that mean this bit is excluded or will get “interpolated” somewhere?
Thanks
Moataz
_______________________________________________
HCP-Users mailing list
[email protected]<mailto:[email protected]>
http://lists.humanconnectome.org/mailman/listinfo/hcp-users
________________________________
The materials in this message are private and may contain Protected Healthcare
Information or other information of a sensitive nature. If you are not the
intended recipient, be advised that any unauthorized use, disclosure, copying
or the taking of any action in reliance on the contents of this information is
strictly prohibited. If you have received this email in error, please
immediately notify the sender via telephone or return mail.
_______________________________________________
HCP-Users mailing list
[email protected]
http://lists.humanconnectome.org/mailman/listinfo/hcp-users
