commit: 461b242fee3a125f00e7de8fedbf7e20b3392683 Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Wed Jan 7 22:00:08 2015 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Wed Jan 7 22:00:08 2015 +0000 URL: http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=461b242f
Initial ebuild, does not install the *.exe.so files. Do we need them? --- sci-biology/blue/ChangeLog | 10 ++++++++++ sci-biology/blue/blue-1.1.2.ebuild | 31 +++++++++++++++++++++++++++++++ sci-biology/blue/metadata.xml | 9 +++++++++ 3 files changed, 50 insertions(+) diff --git a/sci-biology/blue/ChangeLog b/sci-biology/blue/ChangeLog new file mode 100644 index 0000000..7c74563 --- /dev/null +++ b/sci-biology/blue/ChangeLog @@ -0,0 +1,10 @@ +# ChangeLog for sci-biology/blue +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + +*blue-1.1.2 (07 Jan 2015) + + 07 Jan 2015; Martin Mokrejs <[email protected]> +blue-1.1.2.ebuild, + +metadata.xml: + Initial ebuild, does not install the *.exe.so files. Do we need them? + diff --git a/sci-biology/blue/blue-1.1.2.ebuild b/sci-biology/blue/blue-1.1.2.ebuild new file mode 100644 index 0000000..a4555b3 --- /dev/null +++ b/sci-biology/blue/blue-1.1.2.ebuild @@ -0,0 +1,31 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=5 + +DESCRIPTION="Error corrector for Illummina and Roche/454 able to also fix insertions and deletions" +HOMEPAGE="http://www.csiro.au/Outcomes/ICT-and-Services/Software/Blue.aspx"; +SRC_URI="http://www.csiro.au/~/media/CSIROau/Images/Bioinformatics/Blue_software/Version_1-1-2/Linux112.ashx -> "${P}".tar.gz + http://www.csiro.au/~/media/CSIROau/Images/Bioinformatics/Blue_software/Version_1-1-2/Correcting_reads_with_Blue.ashx -> Correcting_reads_with_Blue.pdf" + +LICENSE="GPL" +SLOT="0" +KEYWORDS="" +IUSE="" + +DEPEND="dev-lang/mono" +RDEPEND="${DEPEND}" + +S="${WORKDIR}"/Linux + +src_compile(){ + Blue/compile.sh || die + Tessel/compile.sh || die + GenerateMerPairs/compile.sh || die +} + +src_install(){ + dobin Tessel.exe GenerateMerPairs.exe Blue.exe + # BUG: probably have to install also the *.exe.so files +} diff --git a/sci-biology/blue/metadata.xml b/sci-biology/blue/metadata.xml new file mode 100644 index 0000000..2bc8930 --- /dev/null +++ b/sci-biology/blue/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <herd>sci-biology</herd> + <maintainer> + <email>[email protected]</email> + <name>Martin Mokrejs</name> + </maintainer> +</pkgmetadata>
