commit: 13ba695f8aa01b1e62f9a6c0a9f99ce940d9aadc Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Wed Jan 7 21:58:12 2015 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Wed Jan 7 21:58:12 2015 +0000 URL: http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=13ba695f
initial ebuild for a new package --- sci-biology/pb-honey/metadata.xml | 9 +++++++++ sci-biology/pb-honey/pb-honey-14.1.15.ebuild | 25 +++++++++++++++++++++++++ 2 files changed, 34 insertions(+) diff --git a/sci-biology/pb-honey/metadata.xml b/sci-biology/pb-honey/metadata.xml new file mode 100644 index 0000000..2bc8930 --- /dev/null +++ b/sci-biology/pb-honey/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <herd>sci-biology</herd> + <maintainer> + <email>[email protected]</email> + <name>Martin Mokrejs</name> + </maintainer> +</pkgmetadata> diff --git a/sci-biology/pb-honey/pb-honey-14.1.15.ebuild b/sci-biology/pb-honey/pb-honey-14.1.15.ebuild new file mode 100644 index 0000000..c5440bb --- /dev/null +++ b/sci-biology/pb-honey/pb-honey-14.1.15.ebuild @@ -0,0 +1,25 @@ +# Copyright 1999-2014 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=5 + +PYTHON_COMPAT=( python2_7 ) + +inherit distutils-r1 + +DESCRIPTION="Structural variant identification (SNV) using long reads (over 10kbp)" +HOMEPAGE="https://www.hgsc.bcm.edu/software/honey"; +SRC_URI="http://sourceforge.net/projects/pb-jelly/files/PBHoney/PBHoney_14.1.15.tgz"; + +LICENSE="" +SLOT="0" +KEYWORDS="" +IUSE="" + +DEPEND="sci-biology/samtools + sci-biology/blasr + sci-biology/pysam + dev-python/h5py + dev-python/numpy" +RDEPEND="${DEPEND}"
