commit: 797241ba80bff8d62325714f8770582a11484d87 Author: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org> AuthorDate: Tue Apr 25 11:31:16 2023 +0000 Commit: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org> CommitDate: Tue Apr 25 11:31:16 2023 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=797241ba
sci-biology/chiron: treeclean Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org> profiles/package.mask | 4 ---- sci-biology/chiron/chiron-0.6.1.1.ebuild | 29 ----------------------------- sci-biology/chiron/metadata.xml | 12 ------------ 3 files changed, 45 deletions(-) diff --git a/profiles/package.mask b/profiles/package.mask index 20d20abc8..d39812beb 100644 --- a/profiles/package.mask +++ b/profiles/package.mask @@ -29,7 +29,3 @@ ## app-misc/some-package #--- END OF EXAMPLES --- - -# Andrew Ammerlaan <[email protected]) (12 Jan 2023) -# Needs bump of PYTHON_COMPAT to at least python3_10 -sci-biology/chiron diff --git a/sci-biology/chiron/chiron-0.6.1.1.ebuild b/sci-biology/chiron/chiron-0.6.1.1.ebuild deleted file mode 100644 index 162a03129..000000000 --- a/sci-biology/chiron/chiron-0.6.1.1.ebuild +++ /dev/null @@ -1,29 +0,0 @@ -# Copyright 1999-2022 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=8 - -PYTHON_COMPAT=( python3_{8..9} ) -DISTUTILS_USE_SETUPTOOLS=rdepend - -inherit distutils-r1 - -DESCRIPTION="A deep neural network basecaller for nanopore sequencing" -HOMEPAGE="https://github.com/haotianteng/chiron - https://www.biorxiv.org/content/early/2017/09/12/179531"; -SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz" - -LICENSE="MPL-2.0" -SLOT="0" -KEYWORDS="~amd64" - -RDEPEND=" - dev-python/h5py[${PYTHON_USEDEP}] - sci-biology/mappy[${PYTHON_USEDEP}] - dev-python/numpy[${PYTHON_USEDEP}] - dev-python/statsmodels[${PYTHON_USEDEP}] - dev-python/tqdm[${PYTHON_USEDEP}] - sci-biology/biopython[${PYTHON_USEDEP}] - dev-python/packaging[${PYTHON_USEDEP}] - sci-libs/tensorflow[${PYTHON_USEDEP}] -" diff --git a/sci-biology/chiron/metadata.xml b/sci-biology/chiron/metadata.xml deleted file mode 100644 index 138cb7705..000000000 --- a/sci-biology/chiron/metadata.xml +++ /dev/null @@ -1,12 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> -<pkgmetadata> - <maintainer type="person"> - <email>[email protected]</email> - <name>Martin Mokrejs</name> - </maintainer> - <maintainer type="project"> - <email>[email protected]</email> - <name>Gentoo Biology Project</name> - </maintainer> -</pkgmetadata>
