commit: 04a3311771e0ce7d6337a0de2371d6ce5f3c9b56
Author: Matthias Maier <tamiko <AT> gentoo <DOT> org>
AuthorDate: Thu May 26 00:04:18 2022 +0000
Commit: Matthias Maier <tamiko <AT> gentoo <DOT> org>
CommitDate: Thu May 26 01:26:53 2022 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=04a33117
sci-mathematics/petsc: add 3.17.1
Signed-off-by: Matthias Maier <tamiko <AT> gentoo.org>
sci-mathematics/petsc/Manifest | 1 +
sci-mathematics/petsc/petsc-3.17.1.ebuild | 194 ++++++++++++++++++++++++++++++
2 files changed, 195 insertions(+)
diff --git a/sci-mathematics/petsc/Manifest b/sci-mathematics/petsc/Manifest
index 66543b456f86..a53a6158e9b6 100644
--- a/sci-mathematics/petsc/Manifest
+++ b/sci-mathematics/petsc/Manifest
@@ -3,3 +3,4 @@ DIST petsc-3.14.6.tar.gz 39719179 BLAKE2B
d3047baf87c67eb64ef02c0c54d6313ea06f09
DIST petsc-3.15.0.tar.gz 15976488 BLAKE2B
babfbeb05321c9cb2f7d70ef8ffca974a016eae73ca1a3359d9a8d38aa5aa90ff34571169a5711627d738b93f89fdee3d0a0ff1bd0e51cb7300bbb9b0a8675cb
SHA512
d1565823d8a5ce5e1c2c576bbe1b4ebf467cef20bbd8e0cf6c303c6c2af2bf902b66c79468f4e125496f9242be4bd6ac162535ee30252cfb902c0d906a6f27c0
DIST petsc-3.16.0-fftw-without-mpi.patch.bz2 5824 BLAKE2B
59615b1bbaf8ca1da92d7d193a45a2dd434f762cd741d711d4f408183a201a276ac3c968a3e7d740d19212120271701bce52bb7b0f4e311268f40915c81f9dcb
SHA512
8e07dfe56a9150ce9a3a5ab8012657875ef84e6e7daa60560bbdd9062078c876a826057f3f3eaf1697ce046a82756ee6eb6a8b819eb51245367c9d5c8a72ee8e
DIST petsc-3.16.0.tar.gz 16748960 BLAKE2B
87f9fdb79a9c44e5f476fa4746ad0cbe72f3eda9f6039f2e4743105626701d7c8d6c010fdb9d89becf8619288d0b7a60c8bc4e2fc0793eac5b39030b02c04fd9
SHA512
5280032fb4ec4d058733788bb0ae674e7400565e204133bd10ed88a2965230ec7adeaca2d498267ce661377ca7e6f9d948992206b1d679587606cb422c004655
+DIST petsc-3.17.1.tar.gz 17082265 BLAKE2B
de1bfe45f93e18e32181499e59912df9225c8e24d75f52e641e552fd43e4d5be48d549d284365b173aa93e51603f5b7740eaac0557ff8c7c96b370f4683257f6
SHA512
8c81cc148b1a899a55e54a013d61519ec7b44f98f7ae30c3f8d0e83ba285b23f4b4d9e2cd483c531d337bc41887e4079b727ba73676b1b653910140291e93575
diff --git a/sci-mathematics/petsc/petsc-3.17.1.ebuild
b/sci-mathematics/petsc/petsc-3.17.1.ebuild
new file mode 100644
index 000000000000..d75bccaa9f8f
--- /dev/null
+++ b/sci-mathematics/petsc/petsc-3.17.1.ebuild
@@ -0,0 +1,194 @@
+# Copyright 1999-2022 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+PYTHON_COMPAT=( python3_{8..10} pypy3 )
+
+inherit flag-o-matic fortran-2 python-any-r1 toolchain-funcs
+
+DESCRIPTION="Portable, Extensible Toolkit for Scientific Computation"
+HOMEPAGE="https://www.mcs.anl.gov/petsc";
+SRC_URI="http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/${P}.tar.gz";
+
+LICENSE="BSD-2"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="afterimage boost complex-scalars cxx debug fftw
+fortran hdf5 hypre int64 mpi metis mumps scotch superlu threads X"
+
+# readd sparse when suitesparse-5.6.0 is in tree
+# sparse? ( >=sci-libs/suitesparse-5.6.0 >=sci-libs/cholmod-1.7.0 )
+# $(use_with sparse suitesparse) \
+RDEPEND="
+ virtual/blas
+ virtual/lapack
+
+ afterimage? ( media-libs/libafterimage )
+ boost? ( dev-libs/boost )
+ fftw? ( sci-libs/fftw:3.0[mpi?] )
+ hdf5? ( sci-libs/hdf5[mpi?] )
+ hypre? ( >=sci-libs/hypre-2.18.0[int64?,mpi?] )
+ metis? ( >=sci-libs/parmetis-4 )
+ mpi? ( virtual/mpi[cxx?,fortran?] )
+ mumps? ( sci-libs/mumps[mpi?] sci-libs/scalapack )
+ scotch? ( sci-libs/scotch[int64?,mpi?] )
+ superlu? ( >=sci-libs/superlu-5 )
+ X? ( x11-libs/libX11 )
+"
+DEPEND="
+ ${RDEPEND}
+ ${PYTHON_DEPS}
+"
+BDEPEND="
+ dev-util/cmake
+ sys-apps/which
+ virtual/pkgconfig
+"
+
+# hypre and superlu curretly exclude each other due to missing linking to hypre
+# if both are enabled
+REQUIRED_USE="
+ afterimage? ( X )
+ complex-scalars? ( !hypre !superlu )
+ hdf5? ( mpi )
+ hypre? ( cxx mpi !superlu )
+ mumps? ( mpi scotch )
+ scotch? ( mpi )
+ superlu? ( !hypre )
+"
+PATCHES=(
+ "${FILESDIR}/${PN}-3.7.0-disable-rpath.patch"
+ "${FILESDIR}"/${PN}-3.16.0-fix_sandbox_violation.patch
+)
+
+# petsc uses --with-blah=1 and --with-blah=0 to en/disable options
+petsc_enable() {
+ use "$1" && echo "--with-${2:-$1}=1" || echo "--with-${2:-$1}=0"
+}
+# add external library:
+# petsc_with use_flag libname libdir
+# petsc_with use_flag libname include linking_libs
+petsc_with() {
+ local myuse p=${2:-${1}}
+ if use ${1}; then
+ myuse="--with-${p}=1"
+ if [[ $# -ge 4 ]]; then
+ myuse="${myuse} --with-${p}-include=${EPREFIX}${3}"
+ shift 3
+ myuse="${myuse} --with-${p}-lib=$@"
+ else
+ myuse="${myuse} --with-${p}-dir=${EPREFIX}${3:-/usr}"
+ fi
+ else
+ myuse="--with-${p}=0"
+ fi
+ echo ${myuse}
+}
+
+# select between configure options depending on use flag
+petsc_select() {
+ use "$1" && echo "--with-$2=$3" || echo "--with-$2=$4"
+}
+
+src_configure() {
+ # bug 548498
+ # PETSc runs mpi processes during configure that result in a sandbox
+ # violation by trying to open /proc/mtrr rw. This is not easy to
+ # mitigate because it happens in libpciaccess.so called by libhwloc.so,
+ # which is used by libmpi.so.
+ addpredict /proc/mtrr
+ # if mpi is built with knem support it needs /dev/knem too
+ addpredict /dev/knem
+
+ # configureMPITypes with openmpi-2* insists on accessing the scaling
+ # governor rw.
+ addpredict /sys/devices/system/cpu/
+
+ # bug 771711
+ # configureMPIEXEC and configureMPITypes access /dev/nvidiactl
+ addpredict /dev/nvidiactl
+
+ # bug 810841
+ addpredict /dev/kfd
+
+ local mylang
+ local myopt
+
+ use cxx && mylang="cxx" || mylang="c"
+ use debug && myopt="debug" || myopt="opt"
+
+ # environmental variables expected by petsc during build
+
+ export PETSC_DIR="${S}"
+ export PETSC_ARCH="linux-gnu-${mylang}-${myopt}"
+
+ if use debug; then
+ strip-flags
+ filter-flags -O*
+ fi
+
+ tc-export AR RANLIB
+
+ # C Support on CXX builds is enabled if possible i.e. when not using
+ # complex scalars (no complex type for both available at the same time)
+
+ econf \
+ scrollOutput=1 \
+ AR="${AR}" \
+ CFLAGS="${CFLAGS} -fPIC" \
+ CPPFLAGS="${CPPFLAGS}" \
+ CXXFLAGS="${CXXFLAGS} -fPIC" \
+ CXXOPTFLAGS="${CXXFLAGS} -fPIC" \
+ FCFLAGS="${FCFLAGS} -fPIC" \
+ FFLAGS="${FFLAGS} -fPIC" \
+ LDFLAGS="${LDFLAGS}" \
+ MAKEFLAGS="${MAKEFLAGS}" \
+ RANLIB="${RANLIB}" \
+ --prefix="${EPREFIX}/usr/$(get_libdir)/petsc" \
+ --with-blas-lapack-lib="$($(tc-getPKG_CONFIG) --libs blas
lapack)" \
+ --with-clanguage="${mylang}" \
+ --with-cmake:BOOL=1 \
+ --with-gnu-compilers \
+ --with-imagemagick=0 \
+ --with-matlab=0 \
+ --with-petsc-arch="${PETSC_ARCH}" \
+ --with-precision=double \
+ --with-python=0 \
+ --with-shared-libraries \
+ --with-single-library \
+ --with-windows-graphics=0 \
+ $(petsc_enable debug debugging) \
+ $(petsc_enable fortran) \
+ $(petsc_enable mpi) \
+ $(petsc_enable mpi mpi-compilers) \
+ $(petsc_enable threads pthread) \
+ $(petsc_select complex-scalars scalar-type complex real) \
+ $(petsc_select mpi cc mpicc $(tc-getCC)) \
+ $(petsc_select mpi cxx mpicxx $(tc-getCXX)) \
+ $(petsc_with afterimage afterimage /usr/include/libAfterImage
-lAfterImage) \
+ $(petsc_with hypre hypre /usr/include/hypre -lHYPRE) \
+ $(petsc_with superlu superlu /usr/include/superlu -lsuperlu) \
+ $(petsc_with scotch ptscotch /usr/include/scotch
[-lptesmumps,-lptscotch,-lptscotcherr,-lscotch,-lscotcherr]) \
+ $(petsc_with mumps scalapack /usr/include/scalapack
-lscalapack) \
+ $(use cxx && ! use complex-scalars && echo
"--with-c-support=1") \
+ $(use fortran && echo "$(petsc_select mpi fc mpif77
$(tc-getF77))") \
+ $(use int64 && echo "--with-index-size=64") \
+ $(use_with boost) \
+ $(use_with fftw) \
+ $(use_with hdf5) \
+ $(use_with mumps mumps /usr/include
[-lcmumps,-ldmumps,-lsmumps,-lzmumps,-lmumps_common,-lpord]) \
+ $(use_with X x) \
+ $(use_with X x11)
+}
+
+src_install() {
+ emake DESTDIR="${ED}" install
+
+ # add PETSC_DIR to environmental variables
+ cat >> 99petsc <<- EOF
+ PETSC_DIR=${EPREFIX}/usr/$(get_libdir)/petsc
+ LDPATH=${EPREFIX}/usr/$(get_libdir)/petsc/lib
+ EOF
+ doenvd 99petsc
+}
