commit: e0a89fd9e8bf7f3939ffc6eefaf7ce059a3ab13a
Author: Matthias Maier <tamiko <AT> gentoo <DOT> org>
AuthorDate: Thu May 26 00:05:35 2022 +0000
Commit: Matthias Maier <tamiko <AT> gentoo <DOT> org>
CommitDate: Thu May 26 01:26:54 2022 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=e0a89fd9
sci-mathematics/petsc: drop 3.13.1, 3.14.6, 3.15.0, 3.15.0-r1
Signed-off-by: Matthias Maier <tamiko <AT> gentoo.org>
sci-mathematics/petsc/Manifest | 3 -
.../files/petsc-3.13.0-do_not_run_mpiexec.patch | 34 ----
.../files/petsc-3.13.0-fix_sandbox_violation.patch | 18 --
.../files/petsc-3.13.0-make_hypre_configure.patch | 90 ----------
sci-mathematics/petsc/petsc-3.13.1.ebuild | 196 ---------------------
sci-mathematics/petsc/petsc-3.14.6.ebuild | 194 --------------------
sci-mathematics/petsc/petsc-3.15.0-r1.ebuild | 194 --------------------
sci-mathematics/petsc/petsc-3.15.0.ebuild | 190 --------------------
8 files changed, 919 deletions(-)
diff --git a/sci-mathematics/petsc/Manifest b/sci-mathematics/petsc/Manifest
index a53a6158e9b6..8a1dcafa8362 100644
--- a/sci-mathematics/petsc/Manifest
+++ b/sci-mathematics/petsc/Manifest
@@ -1,6 +1,3 @@
-DIST petsc-3.13.1.tar.gz 35097687 BLAKE2B
fccf64fd3694deffdd0dc561069ffa7e9342fe279b5c9123edeb011df931874083839d27b7b9a0c63faea6487b104b54fd4ce68a88a074c82de91e8baaf270b0
SHA512
41c3138a6ae6c1f2d9077b464c6aeda96287e5a76849582b8f432e2ee93d2594a78ba2181eac0054a77b6165692be5f1a057049313f2be9743d4246383dfdc77
-DIST petsc-3.14.6.tar.gz 39719179 BLAKE2B
d3047baf87c67eb64ef02c0c54d6313ea06f091b377b3cdf6dcf6d96c7d68cec5958a007ddd84b52a3ab39bfc0adf146307fa1785a10f39386393371186a3fba
SHA512
9766e164446ac5a69b8bf761a0e8a235b1a2b85ed9c96a7fd59e668ae4cceb9d9559a38b175b4aa9747e78d7b44d0018a3c02748dcd3d783d28f861f8382d44c
-DIST petsc-3.15.0.tar.gz 15976488 BLAKE2B
babfbeb05321c9cb2f7d70ef8ffca974a016eae73ca1a3359d9a8d38aa5aa90ff34571169a5711627d738b93f89fdee3d0a0ff1bd0e51cb7300bbb9b0a8675cb
SHA512
d1565823d8a5ce5e1c2c576bbe1b4ebf467cef20bbd8e0cf6c303c6c2af2bf902b66c79468f4e125496f9242be4bd6ac162535ee30252cfb902c0d906a6f27c0
DIST petsc-3.16.0-fftw-without-mpi.patch.bz2 5824 BLAKE2B
59615b1bbaf8ca1da92d7d193a45a2dd434f762cd741d711d4f408183a201a276ac3c968a3e7d740d19212120271701bce52bb7b0f4e311268f40915c81f9dcb
SHA512
8e07dfe56a9150ce9a3a5ab8012657875ef84e6e7daa60560bbdd9062078c876a826057f3f3eaf1697ce046a82756ee6eb6a8b819eb51245367c9d5c8a72ee8e
DIST petsc-3.16.0.tar.gz 16748960 BLAKE2B
87f9fdb79a9c44e5f476fa4746ad0cbe72f3eda9f6039f2e4743105626701d7c8d6c010fdb9d89becf8619288d0b7a60c8bc4e2fc0793eac5b39030b02c04fd9
SHA512
5280032fb4ec4d058733788bb0ae674e7400565e204133bd10ed88a2965230ec7adeaca2d498267ce661377ca7e6f9d948992206b1d679587606cb422c004655
DIST petsc-3.17.1.tar.gz 17082265 BLAKE2B
de1bfe45f93e18e32181499e59912df9225c8e24d75f52e641e552fd43e4d5be48d549d284365b173aa93e51603f5b7740eaac0557ff8c7c96b370f4683257f6
SHA512
8c81cc148b1a899a55e54a013d61519ec7b44f98f7ae30c3f8d0e83ba285b23f4b4d9e2cd483c531d337bc41887e4079b727ba73676b1b653910140291e93575
diff --git a/sci-mathematics/petsc/files/petsc-3.13.0-do_not_run_mpiexec.patch
b/sci-mathematics/petsc/files/petsc-3.13.0-do_not_run_mpiexec.patch
deleted file mode 100644
index 4c46658dec71..000000000000
--- a/sci-mathematics/petsc/files/petsc-3.13.0-do_not_run_mpiexec.patch
+++ /dev/null
@@ -1,34 +0,0 @@
-diff --git a/config/BuildSystem/config/packages/MPI.py
b/config/BuildSystem/config/packages/MPI.py
-index 7e424e71..ee502bd2 100644
---- a/config/BuildSystem/config/packages/MPI.py
-+++ b/config/BuildSystem/config/packages/MPI.py
-@@ -210,28 +210,11 @@ shared libraries and run with
--known-mpi-shared-libraries=1')
- raise RuntimeError('Could not locate MPIEXEC - please specify
--with-mpiexec option')
- # Support for spaces and () in executable names; also needs to handle
optional arguments at the end
- # TODO: This support for spaces and () should be moved to core
BuildSystem
-- self.mpiexec = self.mpiexec.replace(' ', '\\ ').replace('(',
'\\(').replace(')', '\\)').replace('\ -',' -')
-- if (hasattr(self, 'ompi_major_version') and
int(self.ompi_major_version) >= 3):
-- (out, err, ret) = Configure.executeShellCommand(self.mpiexec+' -help
all', checkCommand = noCheck, timeout = 60, log = self.log, threads = 1)
-- if out.find('--oversubscribe') >=0:
-- self.mpiexec = self.mpiexec + ' --oversubscribe'
-+ self.mpiexec = self.mpiexec + ' --oversubscribe'
-
- # using mpiexec environmental variables make sure mpiexec matches the MPI
libraries and save the variables for testing in PetscInitialize()
- # the variable HAVE_MPIEXEC_ENVIRONMENTAL_VARIABLE is not currently used.
PetscInitialize() can check the existence of the environmental variable to
- # determine if the program has been started with the correct mpiexec
(will only be set for parallel runs so not clear how to check appropriately)
-- (out, err, ret) = Configure.executeShellCommand(self.mpiexec+' -n 1
printenv', checkCommand = noCheck, timeout = 60, threads = 1, log = self.log)
-- if ret:
-- self.logWrite('Unable to run '+self.mpiexec+' with option "-n 1
printenv"\nThis could be ok, some MPI implementations such as SGI produce a
non-zero status with non-MPI programs\n'+out+err)
-- else:
-- if out.find('MPIR_CVAR_CH3') > -1:
-- if hasattr(self,'ompi_major_version'): raise RuntimeError("Your
libraries are from OpenMPI but it appears your mpiexec is from MPICH");
-- self.addDefine('HAVE_MPIEXEC_ENVIRONMENTAL_VARIABLE', 'MPIR_CVAR_CH3')
-- elif out.find('MPIR_CVAR_CH3') > -1:
-- if hasattr(self,'ompi_major_version'): raise RuntimeError("Your
libraries are from OpenMPI but it appears your mpiexec is from MPICH");
-- self.addDefine('HAVE_MPIEXEC_ENVIRONMENTAL_VARIABLE', 'MPICH')
-- elif out.find('OMPI_COMM_WORLD_SIZE') > -1:
-- if hasattr(self,'mpich_numversion'): raise RuntimeError("Your
libraries are from MPICH but it appears your mpiexec is from OpenMPI");
-- self.addDefine('HAVE_MPIEXEC_ENVIRONMENTAL_VARIABLE', 'OMP')
-
- self.addMakeMacro('MPIEXEC', self.mpiexec)
- self.mpiexec = self.mpiexec + ' -n 1'
diff --git
a/sci-mathematics/petsc/files/petsc-3.13.0-fix_sandbox_violation.patch
b/sci-mathematics/petsc/files/petsc-3.13.0-fix_sandbox_violation.patch
deleted file mode 100644
index c0dfd53a0112..000000000000
--- a/sci-mathematics/petsc/files/petsc-3.13.0-fix_sandbox_violation.patch
+++ /dev/null
@@ -1,18 +0,0 @@
-diff --git a/config/PETSc/options/installDir.py
b/config/PETSc/options/installDir.py
-index 860faf0f..87898811 100755
---- a/config/PETSc/options/installDir.py
-+++ b/config/PETSc/options/installDir.py
-@@ -40,13 +40,6 @@ class Configure(config.base.Configure):
- self.dir =
os.path.abspath(os.path.expanduser(self.framework.argDB['prefix']))
- self.petscDir = self.dir
- self.petscArch = ''
-- try:
-- os.makedirs(os.path.join(self.dir,'PETScTestDirectory'))
-- os.rmdir(os.path.join(self.dir,'PETScTestDirectory'))
-- except Exception as e:
-- self.logPrint('Error trying to to test write permissions on directory
'+str(e))
-- self.installSudoMessage = 'You do not have write permissions to the
--prefix directory '+self.dir+'\nYou will be prompted for the sudo password for
any external package installs'
-- self.installSudo = 'sudo '
- else:
- self.dir = os.path.abspath(os.path.join(self.petscdir.dir,
self.arch.arch))
- self.petscDir = self.petscdir.dir
diff --git
a/sci-mathematics/petsc/files/petsc-3.13.0-make_hypre_configure.patch
b/sci-mathematics/petsc/files/petsc-3.13.0-make_hypre_configure.patch
deleted file mode 100644
index 1453fd519e81..000000000000
--- a/sci-mathematics/petsc/files/petsc-3.13.0-make_hypre_configure.patch
+++ /dev/null
@@ -1,90 +0,0 @@
-diff --git a/config/BuildSystem/config/packages/hypre.py
b/config/BuildSystem/config/packages/hypre.py
-index 4d915c31..1b05a1ee 100644
---- a/config/BuildSystem/config/packages/hypre.py
-+++ b/config/BuildSystem/config/packages/hypre.py
-@@ -5,10 +5,6 @@ class Configure(config.package.GNUPackage):
- def __init__(self, framework):
- config.package.GNUPackage.__init__(self, framework)
- #self.version = '2.18.2'
-- self.minversion = '2.14'
-- self.versionname = 'HYPRE_RELEASE_VERSION'
-- self.versioninclude = 'HYPRE_config.h'
-- self.requiresversion = 1
- #self.gitcommit = 'v'+self.version
- self.gitcommit = '93baaa8c9' # v2.18.2+valgrind-fix
- self.download =
['git://https://github.com/hypre-space/hypre','https://github.com/hypre-space/hypre/archive/'+self.gitcommit+'.tar.gz']
-diff --git a/include/petsc/private/petschypre.h
b/include/petsc/private/petschypre.h
-index 81ca7136..b403e70e 100644
---- a/include/petsc/private/petschypre.h
-+++ b/include/petsc/private/petschypre.h
-@@ -6,12 +6,6 @@
- #include <HYPRE_config.h>
- #include <HYPRE_utilities.h>
-
--/* from version 2.16 on, HYPRE_BigInt is 64 bit for 64bit installations
-- and 32 bit for 32bit installations -> not the best name for a variable */
--#if PETSC_PKG_HYPRE_VERSION_LT(2,16,0)
--typedef PetscInt HYPRE_BigInt;
--#endif
--
- /*
- With scalar type == real, HYPRE_Complex == PetscScalar;
- With scalar type == complex, HYPRE_Complex is double __complex__ while
PetscScalar may be std::complex<double>
-diff --git a/src/mat/impls/hypre/mhypre.c b/src/mat/impls/hypre/mhypre.c
-index 0f7470e6..cce3e2b0 100644
---- a/src/mat/impls/hypre/mhypre.c
-+++ b/src/mat/impls/hypre/mhypre.c
-@@ -15,10 +15,6 @@
- #include <_hypre_parcsr_ls.h>
- #include <_hypre_sstruct_ls.h>
-
--#if PETSC_PKG_HYPRE_VERSION_LT(2,18,0)
--#define hypre_ParCSRMatrixClone(A,B) hypre_ParCSRMatrixCompleteClone(A)
--#endif
--
- static PetscErrorCode MatHYPRE_CreateFromMat(Mat,Mat_HYPRE*);
- static PetscErrorCode MatHYPRE_IJMatrixPreallocate(Mat,Mat,HYPRE_IJMatrix);
- static PetscErrorCode MatHYPRE_IJMatrixFastCopy_MPIAIJ(Mat,HYPRE_IJMatrix);
-@@ -63,7 +59,6 @@ static PetscErrorCode MatHYPRE_IJMatrixPreallocate(Mat A_d,
Mat A_o, HYPRE_IJMat
- nnz_o[i] = 0;
- }
- }
--#if PETSC_PKG_HYPRE_VERSION_GE(2,16,0)
- { /* If we don't do this, the columns of the matrix will be all zeros! */
- hypre_AuxParCSRMatrix *aux_matrix;
- aux_matrix = (hypre_AuxParCSRMatrix*)hypre_IJMatrixTranslator(ij);
-@@ -73,9 +68,6 @@ static PetscErrorCode MatHYPRE_IJMatrixPreallocate(Mat A_d,
Mat A_o, HYPRE_IJMat
- aux_matrix = (hypre_AuxParCSRMatrix*)hypre_IJMatrixTranslator(ij);
- hypre_AuxParCSRMatrixNeedAux(aux_matrix) = 1;
- }
--#else
-- PetscStackCallStandard(HYPRE_IJMatrixSetDiagOffdSizes,(ij,nnz_d,nnz_o));
--#endif
- ierr = PetscFree(nnz_d);CHKERRQ(ierr);
- ierr = PetscFree(nnz_o);CHKERRQ(ierr);
- }
-@@ -233,11 +225,7 @@ static PetscErrorCode
MatHYPRE_IJMatrixFastCopy_MPIAIJ(Mat A, HYPRE_IJMatrix ij)
- /* need to shift the diag column indices (hdiag->j) back to global
numbering since hypre is expecting this */
- hjj = hdiag->j;
- pjj = pdiag->j;
--#if PETSC_PKG_HYPRE_VERSION_GE(2,16,0)
- for (i=0; i<pdiag->nz; i++) hjj[i] = pjj[i];
--#else
-- for (i=0; i<pdiag->nz; i++) hjj[i] = cstart + pjj[i];
--#endif
- ierr = PetscArraycpy(hdiag->data,pdiag->a,pdiag->nz);CHKERRQ(ierr);
- if (sameint) {
- ierr = PetscArraycpy(hoffd->i,poffd->i,pA->A->rmap->n + 1);CHKERRQ(ierr);
-@@ -247,12 +235,8 @@ static PetscErrorCode
MatHYPRE_IJMatrixFastCopy_MPIAIJ(Mat A, HYPRE_IJMatrix ij)
-
- /* need to move the offd column indices (hoffd->j) back to global numbering
since hypre is expecting this
- If we hacked a hypre a bit more we might be able to avoid this step */
--#if PETSC_PKG_HYPRE_VERSION_GE(2,16,0)
- PetscStackCallStandard(hypre_CSRMatrixBigInitialize,(hoffd));
- jj = (PetscInt*) hoffd->big_j;
--#else
-- jj = (PetscInt*) hoffd->j;
--#endif
- pjj = poffd->j;
- for (i=0; i<poffd->nz; i++) jj[i] = garray[pjj[i]];
-
diff --git a/sci-mathematics/petsc/petsc-3.13.1.ebuild
b/sci-mathematics/petsc/petsc-3.13.1.ebuild
deleted file mode 100644
index 23e1117a52c6..000000000000
--- a/sci-mathematics/petsc/petsc-3.13.1.ebuild
+++ /dev/null
@@ -1,196 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-PYTHON_COMPAT=( python3_{7,8} )
-
-inherit flag-o-matic fortran-2 python-any-r1 toolchain-funcs
-
-DESCRIPTION="Portable, Extensible Toolkit for Scientific Computation"
-HOMEPAGE="https://www.mcs.anl.gov/petsc/";
-SRC_URI="http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/${P}.tar.gz";
-
-LICENSE="BSD-2"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE="afterimage boost complex-scalars cxx debug doc fftw
- fortran hdf5 hypre mpi metis mumps scotch sparse superlu threads X"
-
-# hypre and superlu curretly exclude each other due to missing linking to hypre
-# if both are enabled
-REQUIRED_USE="
- afterimage? ( X )
- complex-scalars? ( !hypre !superlu )
- hdf5? ( mpi )
- hypre? ( cxx mpi !superlu )
- mumps? ( mpi scotch )
- scotch? ( mpi )
- superlu? ( !hypre )
-"
-
-RDEPEND="
- virtual/blas
- virtual/lapack
- afterimage? ( media-libs/libafterimage )
- boost? ( dev-libs/boost )
- fftw? ( sci-libs/fftw:3.0[mpi?] )
- hdf5? ( sci-libs/hdf5[mpi?] )
- hypre? ( >=sci-libs/hypre-2.18.0[mpi?] )
- metis? ( >=sci-libs/parmetis-4 )
- mpi? ( virtual/mpi[cxx?,fortran?] )
- mumps? ( sci-libs/mumps[mpi?] sci-libs/scalapack )
- scotch? ( sci-libs/scotch[mpi?] )
- sparse? ( sci-libs/suitesparse >=sci-libs/cholmod-1.7.0 )
- superlu? ( >=sci-libs/superlu-5 )
- X? ( x11-libs/libX11 )
-"
-
-DEPEND="${RDEPEND}
- ${PYTHON_DEPS}
- virtual/pkgconfig
- dev-util/cmake
-"
-
-PATCHES=(
- "${FILESDIR}"/${PN}-3.7.0-disable-rpath.patch
- "${FILESDIR}"/${PN}-3.13.0-fix_sandbox_violation.patch
- "${FILESDIR}"/${PN}-3.13.0-make_hypre_configure.patch
- "${FILESDIR}"/${PN}-3.13.0-do_not_run_mpiexec.patch
-)
-
-# petsc uses --with-blah=1 and --with-blah=0 to en/disable options
-petsc_enable() {
- use "$1" && echo "--with-${2:-$1}=1" || echo "--with-${2:-$1}=0"
-}
-# add external library:
-# petsc_with use_flag libname libdir
-# petsc_with use_flag libname include linking_libs
-petsc_with() {
- local myuse p=${2:-${1}}
- if use ${1}; then
- myuse="--with-${p}=1"
- if [[ $# -ge 4 ]]; then
- myuse="${myuse} --with-${p}-include=${EPREFIX}${3}"
- shift 3
- myuse="${myuse} --with-${p}-lib=$@"
- else
- myuse="${myuse} --with-${p}-dir=${EPREFIX}${3:-/usr}"
- fi
- else
- myuse="--with-${p}=0"
- fi
- echo ${myuse}
-}
-
-# select between configure options depending on use flag
-petsc_select() {
- use "$1" && echo "--with-$2=$3" || echo "--with-$2=$4"
-}
-
-src_configure() {
- # bug 548498
- # PETSc runs mpi processes during configure that result in a sandbox
- # violation by trying to open /proc/mtrr rw. This is not easy to
- # mitigate because it happens in libpciaccess.so called by libhwloc.so,
- # which is used by libmpi.so.
- addpredict /proc/mtrr
- # if mpi is built with knem support it needs /dev/knem too
- addpredict /dev/knem
-
- # configureMPITypes with openmpi-2* insists on accessing the scaling
- # governor rw.
- addpredict /sys/devices/system/cpu/
-
- # bug 771711
- # configureMPIEXEC and configureMPITypes access /dev/nvidiactl
- addpredict /dev/nvidiactl
-
- # bug 810841
- addpredict /dev/kfd
-
- local mylang
- local myopt
-
- use cxx && mylang="cxx" || mylang="c"
- use debug && myopt="debug" || myopt="opt"
-
- # environmental variables expected by petsc during build
-
- export PETSC_DIR="${S}"
- export PETSC_ARCH="linux-gnu-${mylang}-${myopt}"
-
- if use debug; then
- strip-flags
- filter-flags -O*
- fi
-
- # C Support on CXX builds is enabled if possible i.e. when not using
- # complex scalars (no complex type for both available at the same time)
-
- econf \
- scrollOutput=1 \
- FFLAGS="${FFLAGS} -fPIC" \
- CFLAGS="${CFLAGS} -fPIC" \
- CXXFLAGS="${CXXFLAGS} -fPIC" \
- LDFLAGS="${LDFLAGS}" \
- --prefix="${EPREFIX}/usr/$(get_libdir)/petsc" \
- --with-shared-libraries \
- --with-single-library \
- --with-clanguage=${mylang} \
- $(use cxx && ! use complex-scalars && echo "with-c-support=1") \
- --with-petsc-arch=${PETSC_ARCH} \
- --with-precision=double \
- --with-gnu-compilers \
- --with-blas-lapack-lib="$($(tc-getPKG_CONFIG) --libs blas
lapack)" \
- $(petsc_enable debug debugging) \
- $(petsc_enable mpi) \
- $(petsc_select mpi cc mpicc $(tc-getCC)) \
- $(petsc_select mpi cxx mpicxx $(tc-getCXX)) \
- $(petsc_enable fortran) \
- $(use fortran && echo "$(petsc_select mpi fc mpif77
$(tc-getF77))") \
- $(petsc_enable mpi mpi-compilers) \
- $(petsc_select complex-scalars scalar-type complex real) \
- --with-windows-graphics=0 \
- --with-matlab=0 \
- --with-cmake:BOOL=1 \
- $(petsc_enable threads pthread) \
- $(petsc_with afterimage afterimage \
- /usr/include/libAfterImage -lAfterImage) \
- $(use_with hdf5) \
- $(petsc_with hypre hypre \
- /usr/include/hypre -lHYPRE) \
- $(use_with sparse suitesparse) \
- $(petsc_with superlu superlu \
- /usr/include/superlu -lsuperlu) \
- $(use_with X x) \
- $(use_with X x11) \
- $(petsc_with scotch ptscotch \
- /usr/include/scotch \
- [-lptesmumps,-lptscotch,-lptscotcherr,-lscotch,-lscotcherr]) \
- $(petsc_with mumps scalapack \
- /usr/include/scalapack -lscalapack) \
- $(use_with mumps mumps \
- /usr/include \
-
[-lcmumps,-ldmumps,-lsmumps,-lzmumps,-lmumps_common,-lpord]) \
- --with-imagemagick=0 \
- --with-python=0 \
- $(use_with boost) \
- $(use_with fftw)
-}
-
-src_install() {
- emake DESTDIR="${ED}" install
-
- # add PETSC_DIR to environmental variables
- cat >> 99petsc <<- EOF
- PETSC_DIR=${EPREFIX}/usr/$(get_libdir)/petsc
- LDPATH=${EPREFIX}/usr/$(get_libdir)/petsc/lib
- EOF
- doenvd 99petsc
-
- if use doc ; then
- docinto html
- dodoc -r docs/*.html docs/changes docs/manualpages
- fi
-}
diff --git a/sci-mathematics/petsc/petsc-3.14.6.ebuild
b/sci-mathematics/petsc/petsc-3.14.6.ebuild
deleted file mode 100644
index 5bd50a9d32fe..000000000000
--- a/sci-mathematics/petsc/petsc-3.14.6.ebuild
+++ /dev/null
@@ -1,194 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-PYTHON_COMPAT=( python3_{7,8} )
-
-inherit flag-o-matic fortran-2 python-any-r1 toolchain-funcs
-
-DESCRIPTION="Portable, Extensible Toolkit for Scientific Computation"
-HOMEPAGE="https://www.mcs.anl.gov/petsc/";
-SRC_URI="http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/${P}.tar.gz";
-
-LICENSE="BSD-2"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE="afterimage boost complex-scalars cxx debug doc fftw
- fortran hdf5 hypre mpi metis mumps scotch sparse superlu threads X"
-
-# hypre and superlu curretly exclude each other due to missing linking to hypre
-# if both are enabled
-REQUIRED_USE="
- afterimage? ( X )
- complex-scalars? ( !hypre !superlu )
- hdf5? ( mpi )
- hypre? ( cxx mpi !superlu )
- mumps? ( mpi scotch )
- scotch? ( mpi )
- superlu? ( !hypre )
-"
-
-RDEPEND="
- virtual/blas
- virtual/lapack
- afterimage? ( media-libs/libafterimage )
- boost? ( dev-libs/boost )
- fftw? ( sci-libs/fftw:3.0[mpi?] )
- hdf5? ( sci-libs/hdf5[mpi?] )
- hypre? ( >=sci-libs/hypre-2.18.0[mpi?] )
- metis? ( >=sci-libs/parmetis-4 )
- mpi? ( virtual/mpi[cxx?,fortran?] )
- mumps? ( sci-libs/mumps[mpi?] sci-libs/scalapack )
- scotch? ( sci-libs/scotch[mpi?] )
- sparse? ( sci-libs/suitesparse >=sci-libs/cholmod-1.7.0 )
- superlu? ( >=sci-libs/superlu-5 )
- X? ( x11-libs/libX11 )
-"
-
-DEPEND="${RDEPEND}
- ${PYTHON_DEPS}
- virtual/pkgconfig
- dev-util/cmake
-"
-
-PATCHES=(
- "${FILESDIR}"/${PN}-3.7.0-disable-rpath.patch
- "${FILESDIR}"/${PN}-3.13.0-fix_sandbox_violation.patch
-)
-
-# petsc uses --with-blah=1 and --with-blah=0 to en/disable options
-petsc_enable() {
- use "$1" && echo "--with-${2:-$1}=1" || echo "--with-${2:-$1}=0"
-}
-# add external library:
-# petsc_with use_flag libname libdir
-# petsc_with use_flag libname include linking_libs
-petsc_with() {
- local myuse p=${2:-${1}}
- if use ${1}; then
- myuse="--with-${p}=1"
- if [[ $# -ge 4 ]]; then
- myuse="${myuse} --with-${p}-include=${EPREFIX}${3}"
- shift 3
- myuse="${myuse} --with-${p}-lib=$@"
- else
- myuse="${myuse} --with-${p}-dir=${EPREFIX}${3:-/usr}"
- fi
- else
- myuse="--with-${p}=0"
- fi
- echo ${myuse}
-}
-
-# select between configure options depending on use flag
-petsc_select() {
- use "$1" && echo "--with-$2=$3" || echo "--with-$2=$4"
-}
-
-src_configure() {
- # bug 548498
- # PETSc runs mpi processes during configure that result in a sandbox
- # violation by trying to open /proc/mtrr rw. This is not easy to
- # mitigate because it happens in libpciaccess.so called by libhwloc.so,
- # which is used by libmpi.so.
- addpredict /proc/mtrr
- # if mpi is built with knem support it needs /dev/knem too
- addpredict /dev/knem
-
- # configureMPITypes with openmpi-2* insists on accessing the scaling
- # governor rw.
- addpredict /sys/devices/system/cpu/
-
- # bug 771711
- # configureMPIEXEC and configureMPITypes access /dev/nvidiactl
- addpredict /dev/nvidiactl
-
- # bug 810841
- addpredict /dev/kfd
-
- local mylang
- local myopt
-
- use cxx && mylang="cxx" || mylang="c"
- use debug && myopt="debug" || myopt="opt"
-
- # environmental variables expected by petsc during build
-
- export PETSC_DIR="${S}"
- export PETSC_ARCH="linux-gnu-${mylang}-${myopt}"
-
- if use debug; then
- strip-flags
- filter-flags -O*
- fi
-
- # C Support on CXX builds is enabled if possible i.e. when not using
- # complex scalars (no complex type for both available at the same time)
-
- econf \
- scrollOutput=1 \
- FFLAGS="${FFLAGS} -fPIC" \
- CFLAGS="${CFLAGS} -fPIC" \
- CXXFLAGS="${CXXFLAGS} -fPIC" \
- LDFLAGS="${LDFLAGS}" \
- --prefix="${EPREFIX}/usr/$(get_libdir)/petsc" \
- --with-shared-libraries \
- --with-single-library \
- --with-clanguage=${mylang} \
- $(use cxx && ! use complex-scalars && echo "with-c-support=1") \
- --with-petsc-arch=${PETSC_ARCH} \
- --with-precision=double \
- --with-gnu-compilers \
- --with-blas-lapack-lib="$($(tc-getPKG_CONFIG) --libs blas
lapack)" \
- $(petsc_enable debug debugging) \
- $(petsc_enable mpi) \
- $(petsc_select mpi cc mpicc $(tc-getCC)) \
- $(petsc_select mpi cxx mpicxx $(tc-getCXX)) \
- $(petsc_enable fortran) \
- $(use fortran && echo "$(petsc_select mpi fc mpif77
$(tc-getF77))") \
- $(petsc_enable mpi mpi-compilers) \
- $(petsc_select complex-scalars scalar-type complex real) \
- --with-windows-graphics=0 \
- --with-matlab=0 \
- --with-cmake:BOOL=1 \
- $(petsc_enable threads pthread) \
- $(petsc_with afterimage afterimage \
- /usr/include/libAfterImage -lAfterImage) \
- $(use_with hdf5) \
- $(petsc_with hypre hypre \
- /usr/include/hypre -lHYPRE) \
- $(use_with sparse suitesparse) \
- $(petsc_with superlu superlu \
- /usr/include/superlu -lsuperlu) \
- $(use_with X x) \
- $(use_with X x11) \
- $(petsc_with scotch ptscotch \
- /usr/include/scotch \
- [-lptesmumps,-lptscotch,-lptscotcherr,-lscotch,-lscotcherr]) \
- $(petsc_with mumps scalapack \
- /usr/include/scalapack -lscalapack) \
- $(use_with mumps mumps \
- /usr/include \
-
[-lcmumps,-ldmumps,-lsmumps,-lzmumps,-lmumps_common,-lpord]) \
- --with-imagemagick=0 \
- --with-python=0 \
- $(use_with boost) \
- $(use_with fftw)
-}
-
-src_install() {
- emake DESTDIR="${ED}" install
-
- # add PETSC_DIR to environmental variables
- cat >> 99petsc <<- EOF
- PETSC_DIR=${EPREFIX}/usr/$(get_libdir)/petsc
- LDPATH=${EPREFIX}/usr/$(get_libdir)/petsc/lib
- EOF
- doenvd 99petsc
-
- if use doc ; then
- docinto html
- dodoc -r docs/*.html docs/changes docs/manualpages
- fi
-}
diff --git a/sci-mathematics/petsc/petsc-3.15.0-r1.ebuild
b/sci-mathematics/petsc/petsc-3.15.0-r1.ebuild
deleted file mode 100644
index 5da94f15ff16..000000000000
--- a/sci-mathematics/petsc/petsc-3.15.0-r1.ebuild
+++ /dev/null
@@ -1,194 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-PYTHON_COMPAT=( python3_{8..10} pypy3 )
-
-inherit flag-o-matic fortran-2 python-any-r1 toolchain-funcs
-
-DESCRIPTION="Portable, Extensible Toolkit for Scientific Computation"
-HOMEPAGE="https://www.mcs.anl.gov/petsc";
-SRC_URI="http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/${P}.tar.gz";
-
-LICENSE="BSD-2"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE="afterimage boost complex-scalars cxx debug fftw
-fortran hdf5 hypre int64 mpi metis mumps scotch superlu threads X"
-
-# readd sparse when suitesparse-5.6.0 is in tree
-# sparse? ( >=sci-libs/suitesparse-5.6.0 >=sci-libs/cholmod-1.7.0 )
-# $(use_with sparse suitesparse) \
-RDEPEND="
- virtual/blas
- virtual/lapack
-
- afterimage? ( media-libs/libafterimage )
- boost? ( dev-libs/boost )
- fftw? ( sci-libs/fftw:3.0[mpi?] )
- hdf5? ( sci-libs/hdf5[mpi?] )
- hypre? ( >=sci-libs/hypre-2.18.0[int64?,mpi?] )
- metis? ( >=sci-libs/parmetis-4 )
- mpi? ( virtual/mpi[cxx?,fortran?] )
- mumps? ( sci-libs/mumps[mpi?] sci-libs/scalapack )
- scotch? ( sci-libs/scotch[int64?,mpi?] )
- superlu? ( >=sci-libs/superlu-5 )
- X? ( x11-libs/libX11 )
-"
-DEPEND="
- ${RDEPEND}
- ${PYTHON_DEPS}
-"
-BDEPEND="
- dev-util/cmake
- sys-apps/which
- virtual/pkgconfig
-"
-
-# hypre and superlu curretly exclude each other due to missing linking to hypre
-# if both are enabled
-REQUIRED_USE="
- afterimage? ( X )
- complex-scalars? ( !hypre !superlu )
- hdf5? ( mpi )
- hypre? ( cxx mpi !superlu )
- mumps? ( mpi scotch )
- scotch? ( mpi )
- superlu? ( !hypre )
-"
-PATCHES=(
- "${FILESDIR}/${PN}-3.7.0-disable-rpath.patch"
- "${FILESDIR}/${PN}-3.13.0-fix_sandbox_violation.patch"
-)
-
-# petsc uses --with-blah=1 and --with-blah=0 to en/disable options
-petsc_enable() {
- use "$1" && echo "--with-${2:-$1}=1" || echo "--with-${2:-$1}=0"
-}
-# add external library:
-# petsc_with use_flag libname libdir
-# petsc_with use_flag libname include linking_libs
-petsc_with() {
- local myuse p=${2:-${1}}
- if use ${1}; then
- myuse="--with-${p}=1"
- if [[ $# -ge 4 ]]; then
- myuse="${myuse} --with-${p}-include=${EPREFIX}${3}"
- shift 3
- myuse="${myuse} --with-${p}-lib=$@"
- else
- myuse="${myuse} --with-${p}-dir=${EPREFIX}${3:-/usr}"
- fi
- else
- myuse="--with-${p}=0"
- fi
- echo ${myuse}
-}
-
-# select between configure options depending on use flag
-petsc_select() {
- use "$1" && echo "--with-$2=$3" || echo "--with-$2=$4"
-}
-
-src_configure() {
- # bug 548498
- # PETSc runs mpi processes during configure that result in a sandbox
- # violation by trying to open /proc/mtrr rw. This is not easy to
- # mitigate because it happens in libpciaccess.so called by libhwloc.so,
- # which is used by libmpi.so.
- addpredict /proc/mtrr
- # if mpi is built with knem support it needs /dev/knem too
- addpredict /dev/knem
-
- # configureMPITypes with openmpi-2* insists on accessing the scaling
- # governor rw.
- addpredict /sys/devices/system/cpu/
-
- # bug 771711
- # configureMPIEXEC and configureMPITypes access /dev/nvidiactl
- addpredict /dev/nvidiactl
-
- # bug 810841
- addpredict /dev/kfd
-
- local mylang
- local myopt
-
- use cxx && mylang="cxx" || mylang="c"
- use debug && myopt="debug" || myopt="opt"
-
- # environmental variables expected by petsc during build
-
- export PETSC_DIR="${S}"
- export PETSC_ARCH="linux-gnu-${mylang}-${myopt}"
-
- if use debug; then
- strip-flags
- filter-flags -O*
- fi
-
- tc-export AR RANLIB
-
- # C Support on CXX builds is enabled if possible i.e. when not using
- # complex scalars (no complex type for both available at the same time)
-
- econf \
- scrollOutput=1 \
- AR="${AR}" \
- CFLAGS="${CFLAGS} -fPIC" \
- CPPFLAGS="${CPPFLAGS}" \
- CXXFLAGS="${CXXFLAGS} -fPIC" \
- CXXOPTFLAGS="${CXXFLAGS} -fPIC" \
- FCFLAGS="${FCFLAGS} -fPIC" \
- FFLAGS="${FFLAGS} -fPIC" \
- LDFLAGS="${LDFLAGS}" \
- MAKEFLAGS="${MAKEFLAGS}" \
- RANLIB="${RANLIB}" \
- --prefix="${EPREFIX}/usr/$(get_libdir)/petsc" \
- --with-blas-lapack-lib="$($(tc-getPKG_CONFIG) --libs blas
lapack)" \
- --with-clanguage="${mylang}" \
- --with-cmake:BOOL=1 \
- --with-gnu-compilers \
- --with-imagemagick=0 \
- --with-matlab=0 \
- --with-petsc-arch="${PETSC_ARCH}" \
- --with-precision=double \
- --with-python=0 \
- --with-shared-libraries \
- --with-single-library \
- --with-windows-graphics=0 \
- $(petsc_enable debug debugging) \
- $(petsc_enable fortran) \
- $(petsc_enable mpi) \
- $(petsc_enable mpi mpi-compilers) \
- $(petsc_enable threads pthread) \
- $(petsc_select complex-scalars scalar-type complex real) \
- $(petsc_select mpi cc mpicc $(tc-getCC)) \
- $(petsc_select mpi cxx mpicxx $(tc-getCXX)) \
- $(petsc_with afterimage afterimage /usr/include/libAfterImage
-lAfterImage) \
- $(petsc_with hypre hypre /usr/include/hypre -lHYPRE) \
- $(petsc_with superlu superlu /usr/include/superlu -lsuperlu) \
- $(petsc_with scotch ptscotch /usr/include/scotch
[-lptesmumps,-lptscotch,-lptscotcherr,-lscotch,-lscotcherr]) \
- $(petsc_with mumps scalapack /usr/include/scalapack
-lscalapack) \
- $(use cxx && ! use complex-scalars && echo
"--with-c-support=1") \
- $(use fortran && echo "$(petsc_select mpi fc mpif77
$(tc-getF77))") \
- $(use int64 && echo "--with-index-size=64") \
- $(use_with boost) \
- $(use_with fftw) \
- $(use_with hdf5) \
- $(use_with mumps mumps /usr/include
[-lcmumps,-ldmumps,-lsmumps,-lzmumps,-lmumps_common,-lpord]) \
- $(use_with X x) \
- $(use_with X x11)
-}
-
-src_install() {
- emake DESTDIR="${ED}" install
-
- # add PETSC_DIR to environmental variables
- cat >> 99petsc <<- EOF
- PETSC_DIR=${EPREFIX}/usr/$(get_libdir)/petsc
- LDPATH=${EPREFIX}/usr/$(get_libdir)/petsc/lib
- EOF
- doenvd 99petsc
-}
diff --git a/sci-mathematics/petsc/petsc-3.15.0.ebuild
b/sci-mathematics/petsc/petsc-3.15.0.ebuild
deleted file mode 100644
index 8286baab9803..000000000000
--- a/sci-mathematics/petsc/petsc-3.15.0.ebuild
+++ /dev/null
@@ -1,190 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-PYTHON_COMPAT=( python3_{8..10} )
-
-inherit flag-o-matic fortran-2 python-any-r1 toolchain-funcs
-
-DESCRIPTION="Portable, Extensible Toolkit for Scientific Computation"
-HOMEPAGE="https://www.mcs.anl.gov/petsc/";
-SRC_URI="http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/${P}.tar.gz";
-
-LICENSE="BSD-2"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE="afterimage boost complex-scalars cxx debug fftw
- fortran hdf5 hypre mpi metis mumps scotch sparse superlu threads X"
-
-# hypre and superlu curretly exclude each other due to missing linking to hypre
-# if both are enabled
-REQUIRED_USE="
- afterimage? ( X )
- complex-scalars? ( !hypre !superlu )
- hdf5? ( mpi )
- hypre? ( cxx mpi !superlu )
- mumps? ( mpi scotch )
- scotch? ( mpi )
- superlu? ( !hypre )
-"
-
-RDEPEND="
- virtual/blas
- virtual/lapack
- afterimage? ( media-libs/libafterimage )
- boost? ( dev-libs/boost )
- fftw? ( sci-libs/fftw:3.0[mpi?] )
- hdf5? ( sci-libs/hdf5[mpi?] )
- hypre? ( >=sci-libs/hypre-2.18.0[mpi?] )
- metis? ( >=sci-libs/parmetis-4 )
- mpi? ( virtual/mpi[cxx?,fortran?] )
- mumps? ( sci-libs/mumps[mpi?] sci-libs/scalapack )
- scotch? ( sci-libs/scotch[mpi?] )
- sparse? ( sci-libs/suitesparse >=sci-libs/cholmod-1.7.0 )
- superlu? ( >=sci-libs/superlu-5 )
- X? ( x11-libs/libX11 )
-"
-
-DEPEND="${RDEPEND}
- ${PYTHON_DEPS}
- virtual/pkgconfig
- dev-util/cmake
- sys-apps/which
-"
-
-PATCHES=(
- "${FILESDIR}"/${PN}-3.7.0-disable-rpath.patch
- "${FILESDIR}"/${PN}-3.13.0-fix_sandbox_violation.patch
-)
-
-# petsc uses --with-blah=1 and --with-blah=0 to en/disable options
-petsc_enable() {
- use "$1" && echo "--with-${2:-$1}=1" || echo "--with-${2:-$1}=0"
-}
-# add external library:
-# petsc_with use_flag libname libdir
-# petsc_with use_flag libname include linking_libs
-petsc_with() {
- local myuse p=${2:-${1}}
- if use ${1}; then
- myuse="--with-${p}=1"
- if [[ $# -ge 4 ]]; then
- myuse="${myuse} --with-${p}-include=${EPREFIX}${3}"
- shift 3
- myuse="${myuse} --with-${p}-lib=$@"
- else
- myuse="${myuse} --with-${p}-dir=${EPREFIX}${3:-/usr}"
- fi
- else
- myuse="--with-${p}=0"
- fi
- echo ${myuse}
-}
-
-# select between configure options depending on use flag
-petsc_select() {
- use "$1" && echo "--with-$2=$3" || echo "--with-$2=$4"
-}
-
-src_configure() {
- # bug 548498
- # PETSc runs mpi processes during configure that result in a sandbox
- # violation by trying to open /proc/mtrr rw. This is not easy to
- # mitigate because it happens in libpciaccess.so called by libhwloc.so,
- # which is used by libmpi.so.
- addpredict /proc/mtrr
- # if mpi is built with knem support it needs /dev/knem too
- addpredict /dev/knem
-
- # configureMPITypes with openmpi-2* insists on accessing the scaling
- # governor rw.
- addpredict /sys/devices/system/cpu/
-
- # bug 771711
- # configureMPIEXEC and configureMPITypes access /dev/nvidiactl
- addpredict /dev/nvidiactl
-
- # bug 810841
- addpredict /dev/kfd
-
- local mylang
- local myopt
-
- use cxx && mylang="cxx" || mylang="c"
- use debug && myopt="debug" || myopt="opt"
-
- # environmental variables expected by petsc during build
-
- export PETSC_DIR="${S}"
- export PETSC_ARCH="linux-gnu-${mylang}-${myopt}"
-
- if use debug; then
- strip-flags
- filter-flags -O*
- fi
-
- # C Support on CXX builds is enabled if possible i.e. when not using
- # complex scalars (no complex type for both available at the same time)
-
- econf \
- scrollOutput=1 \
- FFLAGS="${FFLAGS} -fPIC" \
- CFLAGS="${CFLAGS} -fPIC" \
- CXXFLAGS="${CXXFLAGS} -fPIC" \
- LDFLAGS="${LDFLAGS}" \
- --prefix="${EPREFIX}/usr/$(get_libdir)/petsc" \
- --with-shared-libraries \
- --with-single-library \
- --with-clanguage=${mylang} \
- $(use cxx && ! use complex-scalars && echo "with-c-support=1") \
- --with-petsc-arch=${PETSC_ARCH} \
- --with-precision=double \
- --with-gnu-compilers \
- --with-blas-lapack-lib="$($(tc-getPKG_CONFIG) --libs blas
lapack)" \
- $(petsc_enable debug debugging) \
- $(petsc_enable mpi) \
- $(petsc_select mpi cc mpicc $(tc-getCC)) \
- $(petsc_select mpi cxx mpicxx $(tc-getCXX)) \
- $(petsc_enable fortran) \
- $(use fortran && echo "$(petsc_select mpi fc mpif77
$(tc-getF77))") \
- $(petsc_enable mpi mpi-compilers) \
- $(petsc_select complex-scalars scalar-type complex real) \
- --with-windows-graphics=0 \
- --with-matlab=0 \
- --with-cmake:BOOL=1 \
- $(petsc_enable threads pthread) \
- $(petsc_with afterimage afterimage \
- /usr/include/libAfterImage -lAfterImage) \
- $(use_with hdf5) \
- $(petsc_with hypre hypre \
- /usr/include/hypre -lHYPRE) \
- $(use_with sparse suitesparse) \
- $(petsc_with superlu superlu \
- /usr/include/superlu -lsuperlu) \
- $(use_with X x) \
- $(use_with X x11) \
- $(petsc_with scotch ptscotch \
- /usr/include/scotch \
- [-lptesmumps,-lptscotch,-lptscotcherr,-lscotch,-lscotcherr]) \
- $(petsc_with mumps scalapack \
- /usr/include/scalapack -lscalapack) \
- $(use_with mumps mumps \
- /usr/include \
-
[-lcmumps,-ldmumps,-lsmumps,-lzmumps,-lmumps_common,-lpord]) \
- --with-imagemagick=0 \
- --with-python=0 \
- $(use_with boost) \
- $(use_with fftw)
-}
-
-src_install() {
- emake DESTDIR="${ED}" install
-
- # add PETSC_DIR to environmental variables
- cat >> 99petsc <<- EOF
- PETSC_DIR=${EPREFIX}/usr/$(get_libdir)/petsc
- LDPATH=${EPREFIX}/usr/$(get_libdir)/petsc/lib
- EOF
- doenvd 99petsc
-}
