commit: f5bcc5911aea4f5c5cb38e65c8bc1a01fbc6bcf2 Author: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org> AuthorDate: Tue Aug 31 09:19:28 2021 +0000 Commit: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org> CommitDate: Tue Aug 31 09:19:28 2021 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=f5bcc591
sci-biology/cgview-bin: remove last-rited pack Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org> profiles/package.mask | 1 - sci-biology/cgview-bin/cgview-bin-1.0.0.ebuild | 43 -------------------------- sci-biology/cgview-bin/metadata.xml | 12 ------- 3 files changed, 56 deletions(-) diff --git a/profiles/package.mask b/profiles/package.mask index a58bd71ee..83a94e897 100644 --- a/profiles/package.mask +++ b/profiles/package.mask @@ -37,7 +37,6 @@ # Bug #798015, removal in 30 days. # Perhaps these packages work with the newer ncbi-tools++? If anyone is actively # using these packages please open a bug report -sci-biology/cgview-bin sci-biology/prot4EST sci-biology/seqclean sci-chemistry/talosn diff --git a/sci-biology/cgview-bin/cgview-bin-1.0.0.ebuild b/sci-biology/cgview-bin/cgview-bin-1.0.0.ebuild deleted file mode 100644 index 5135e04ab..000000000 --- a/sci-biology/cgview-bin/cgview-bin-1.0.0.ebuild +++ /dev/null @@ -1,43 +0,0 @@ -# Copyright 1999-2021 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -inherit java-pkg-2 perl-module eutils toolchain-funcs - -DESCRIPTION="CGView Comparison Tool to compare genome sequences graphically (aka CCT)" -HOMEPAGE="https://paulstothard.github.io/cgview_comparison_tool/"; -SRC_URI="https://github.com/paulstothard/cgview_comparison_tool/archive/v${PV}.tar.gz -> ${P}.tar.gz" - -LICENSE="GPL-2" -SLOT="0" -KEYWORDS="~amd64" - -DEPEND=" - >=dev-lang/perl-5.8.8 - >=sci-biology/ncbi-tools-2.2.15 - >=virtual/jre-1.4.2:* - dev-java/xerces:2 - dev-java/batik - dev-java/commons-lang:2.1 - >=media-gfx/imagemagick-6 - >=sci-biology/bioperl-1.4.0" -RDEPEND="${DEPEND}" - -S="${WORKDIR}/cgview_comparison_tool-${PV}" - -src_install() { - insinto /usr/share/${PN}/scripts - chmod a+x scripts/* # BUG: this does not work - doins -r scripts/* - insinto /usr/share/${PN}/lib/scripts - doins -r lib/scripts/* - echo 'CCT_HOME='${EPREFIX}'/usr/share/cgview' > "${S}/99cgview" - echo 'PATH="$PATH":"'${CCT_HOME}'/scripts"' >> "${S}/99cgview" - doenvd "${S}/99cgview" - perl_set_version - perl_domodule lib/perl_modules/Util/*.pm - # - # Exception in thread "main" java.lang.NoClassDefFoundError: org/apache/batik/svggen/SVGGraphics2DIOException - java-pkg_dojar bin/cgview/cgview.jar -} diff --git a/sci-biology/cgview-bin/metadata.xml b/sci-biology/cgview-bin/metadata.xml deleted file mode 100644 index 138cb7705..000000000 --- a/sci-biology/cgview-bin/metadata.xml +++ /dev/null @@ -1,12 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> -<pkgmetadata> - <maintainer type="person"> - <email>[email protected]</email> - <name>Martin Mokrejs</name> - </maintainer> - <maintainer type="project"> - <email>[email protected]</email> - <name>Gentoo Biology Project</name> - </maintainer> -</pkgmetadata>
