commit: e97b1a4d5fa82dd7d9e03ad46cc4aca4c1d52eb8 Author: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org> AuthorDate: Tue Aug 31 09:23:41 2021 +0000 Commit: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org> CommitDate: Tue Aug 31 09:23:41 2021 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=e97b1a4d
sci-chemistry/talosn: remove last-rited pack Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org> profiles/package.mask | 9 --- sci-chemistry/talosn/metadata.xml | 8 --- .../talosn/talosn-4.12.2015.147.15.40.ebuild | 68 ---------------------- 3 files changed, 85 deletions(-) diff --git a/profiles/package.mask b/profiles/package.mask index 789da8f84..d39812beb 100644 --- a/profiles/package.mask +++ b/profiles/package.mask @@ -29,12 +29,3 @@ ## app-misc/some-package #--- END OF EXAMPLES --- - -# Andrew Ammerlaan <[email protected]> (02 Aug 2021) -# These packages depend on ncbi-tools which is being removed from ::gentoo: -# Last release 10 years ago, EOL upstream, no other distro packages this -# anymore, tons of bugs. Revdeps are unmaintained too and out of date. -# Bug #798015, removal in 30 days. -# Perhaps these packages work with the newer ncbi-tools++? If anyone is actively -# using these packages please open a bug report -sci-chemistry/talosn diff --git a/sci-chemistry/talosn/metadata.xml b/sci-chemistry/talosn/metadata.xml deleted file mode 100644 index da36ecbfc..000000000 --- a/sci-chemistry/talosn/metadata.xml +++ /dev/null @@ -1,8 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> -<pkgmetadata> - <maintainer type="project"> - <email>[email protected]</email> - <name>Gentoo Chemistry Project</name> - </maintainer> -</pkgmetadata> diff --git a/sci-chemistry/talosn/talosn-4.12.2015.147.15.40.ebuild b/sci-chemistry/talosn/talosn-4.12.2015.147.15.40.ebuild deleted file mode 100644 index 1fbcea875..000000000 --- a/sci-chemistry/talosn/talosn-4.12.2015.147.15.40.ebuild +++ /dev/null @@ -1,68 +0,0 @@ -# Copyright 1999-2021 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -inherit java-pkg-opt-2 - -DESCRIPTION="Prediction of Protein bb and sc Torsion Angles from NMR Chemical Shifts" -HOMEPAGE="https://spin.niddk.nih.gov/bax/software/TALOS-N/"; -SRC_URI="https://spin.niddk.nih.gov/bax/software/TALOS-N/talosn.tZ -> ${P}.tgz" - -SLOT="0" -LICENSE="all-rights-reserved" -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" -IUSE="examples" - -DEPEND=">=virtual/jre-1.5:*" -RDEPEND="${DEPEND} - app-shells/tcsh - sci-biology/ncbi-tools" - -S="${WORKDIR}" - -QA_PREBUILT="/opt/.*" - -src_prepare() { - default - local s64 - use amd64 || s64="_x64" - rm -f bin/TALOSN.{linux,mac,static.*,winxp,linux9${s64}} || die - - sed \ - -e '/setenv TALOSN_DIR/d' \ - -e "/set BLAST/s:=.*:= \"${EPREFIX}/usr/bin/blastpgp\":g" \ - -e '/set NR_DBNAME/s:=.*:= ${BLASTDB}:g' \ - -i talosn_ss || die -} - -src_install() { - local TALOSN="/opt/${PN}" - exeinto ${TALOSN}/bin - doexe bin/* - - exeinto ${TALOSN}/com - doexe com/* - - exeinto /opt/bin - doexe talosn{,_ss} - - insinto ${TALOSN} - doins -r tab - - java-pkg_jarinto ${TALOSN} - java-pkg_dojar rama.jar - - java-pkg_dolauncher jrama --jar rama.jar -into /opt/ - - if use examples; then - insinto /usr/share/${PN} - doins -r demo - fi - - cat >> "${T}"/40talosn <<- EOF - TALOSN_DIR="${EPREFIX}/${TALOSN}" - #BLASTDB= - EOF - doenvd "${T}"/40talosn -}
