commit: cbd0aa94ac67bb0371412b7dd392ae89fba4f6bd
Author: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Fri Mar 5 18:36:36 2021 +0000
Commit: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Fri Mar 5 18:36:36 2021 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=cbd0aa94
sci-biology/VarScan: EAPI bump, vers bump, fix fetch
Package-Manager: Portage-3.0.16, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>
sci-biology/VarScan/VarScan-2.4.2.ebuild | 36 ----------------------
.../{VarScan-2.4.3.ebuild => VarScan-2.4.4.ebuild} | 7 ++---
2 files changed, 3 insertions(+), 40 deletions(-)
diff --git a/sci-biology/VarScan/VarScan-2.4.2.ebuild
b/sci-biology/VarScan/VarScan-2.4.2.ebuild
deleted file mode 100644
index 4add5f679..000000000
--- a/sci-biology/VarScan/VarScan-2.4.2.ebuild
+++ /dev/null
@@ -1,36 +0,0 @@
-# Copyright 1999-2017 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-inherit java-pkg-2
-
-DESCRIPTION="Variant detection (germline, multi-sample, somatic mutations,
CNA, SNP calls)"
-HOMEPAGE="http://varscan.sourceforge.net/";
-
-# binary
-#http://downloads.sourceforge.net/project/varscan/VarScan.v2.3.7.jar
-#SRC_URI="http://downloads.sourceforge.net/project/varscan/${PN}.v${PV}.jar";
-SRC_URI="http://downloads.sourceforge.net/project/varscan/${PN}.v${PV}.source.jar";
-
-LICENSE="Non-profit-OSL-3.0"
-SLOT="0"
-KEYWORDS="~amd64"
-IUSE=""
-
-DEPEND="
- >=virtual/jdk-1.5:*
- !sci-biology/VarScan-bin"
-RDEPEND=">=virtual/jre-1.5:*
- sci-biology/bam-readcount"
-
-S="${WORKDIR}"/net/sf/varscan
-
-src_compile(){
- javac *.java
-}
-
-src_install(){
- java-pkg_newjar "${DISTDIR}"/${PN}.v${PV}.source.jar ${PN}.source.jar
- java-pkg_dolauncher VarScan
-}
diff --git a/sci-biology/VarScan/VarScan-2.4.3.ebuild
b/sci-biology/VarScan/VarScan-2.4.4.ebuild
similarity index 86%
rename from sci-biology/VarScan/VarScan-2.4.3.ebuild
rename to sci-biology/VarScan/VarScan-2.4.4.ebuild
index 0b3fc2ad5..72a3c94df 100644
--- a/sci-biology/VarScan/VarScan-2.4.3.ebuild
+++ b/sci-biology/VarScan/VarScan-2.4.4.ebuild
@@ -1,7 +1,7 @@
-# Copyright 1999-2017 Gentoo Foundation
+# Copyright 1999-2021 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
-EAPI=5
+EAPI=7
inherit java-pkg-2
@@ -10,12 +10,11 @@ HOMEPAGE="http://varscan.sourceforge.net/";
# binary
#https://github.com/dkoboldt/varscan/blob/master/VarScan.v2.4.3.jar
-SRC_URI="https://github.com/dkoboldt/varscan/blob/master/VarScan.v2.4.3.source.jar?raw=true
-> ${PN}.v${PV}.source.jar"
+SRC_URI="https://github.com/dkoboldt/varscan/blob/master/VarScan.v${PV}.source.jar?raw=true
-> ${PN}.v${PV}.source.jar"
LICENSE="Non-profit-OSL-3.0"
SLOT="0"
KEYWORDS="~amd64"
-IUSE=""
DEPEND="
>=virtual/jdk-1.5:*
