commit: 94fa9f0cecf3e675c27837163d128a95f4e808e6 Author: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net> AuthorDate: Fri Mar 5 18:39:29 2021 +0000 Commit: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net> CommitDate: Fri Mar 5 18:39:29 2021 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=94fa9f0c
sci-biology/VarScan-bin: version bump, EAPI bump, fix fetch Package-Manager: Portage-3.0.16, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net> sci-biology/VarScan-bin/VarScan-bin-2.4.3.ebuild | 31 ---------------------- ...n-bin-2.4.2.ebuild => VarScan-bin-2.4.4.ebuild} | 11 ++++---- 2 files changed, 5 insertions(+), 37 deletions(-) diff --git a/sci-biology/VarScan-bin/VarScan-bin-2.4.3.ebuild b/sci-biology/VarScan-bin/VarScan-bin-2.4.3.ebuild deleted file mode 100644 index d76eccfdb..000000000 --- a/sci-biology/VarScan-bin/VarScan-bin-2.4.3.ebuild +++ /dev/null @@ -1,31 +0,0 @@ -# Copyright 1999-2017 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -inherit java-pkg-2 - -MY_PN="VarScan" -DESCRIPTION="Variant detection (germline, multi-sample, somatic mut., CNA), SNP" -HOMEPAGE="http://dkoboldt.github.io/varscan"; - -# binary -#http://downloads.sourceforge.net/project/varscan/VarScan.v2.3.7.jar -#SRC_URI="http://downloads.sourceforge.net/project/varscan/${PN}.v${PV}.jar"; -SRC_URI="https://github.com/dkoboldt/varscan/blob/master/${MY_PN}.v${PV}.jar?raw=true -> ${MY_PN}.v${PV}.jar" - -LICENSE="Non-profit-OSL-3.0" -SLOT="0" -KEYWORDS="~amd64" -IUSE="" - -DEPEND=" - >=virtual/jdk-1.5:*" -RDEPEND=">=virtual/jre-1.5:*" - -S="${WORKDIR}"/net/sf/varscan - -src_install(){ - java-pkg_newjar "${DISTDIR}"/${MY_PN}.v${PV}.jar ${MY_PN}.jar - java-pkg_dolauncher VarScan -} diff --git a/sci-biology/VarScan-bin/VarScan-bin-2.4.2.ebuild b/sci-biology/VarScan-bin/VarScan-bin-2.4.4.ebuild similarity index 84% rename from sci-biology/VarScan-bin/VarScan-bin-2.4.2.ebuild rename to sci-biology/VarScan-bin/VarScan-bin-2.4.4.ebuild index d2902cb7f..5b06676c0 100644 --- a/sci-biology/VarScan-bin/VarScan-bin-2.4.2.ebuild +++ b/sci-biology/VarScan-bin/VarScan-bin-2.4.4.ebuild @@ -1,7 +1,7 @@ -# Copyright 1999-2016 Gentoo Foundation +# Copyright 1999-2021 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=5 +EAPI=7 inherit java-pkg-2 @@ -17,11 +17,10 @@ SRC_URI="https://github.com/dkoboldt/varscan/blob/master/${MY_PN}.v${PV}.jar?raw LICENSE="Non-profit-OSL-3.0" SLOT="0" KEYWORDS="~amd64" -IUSE="" -DEPEND=" - >=virtual/jdk-1.5:*" -RDEPEND=">=virtual/jre-1.5:*" +DEPEND=">=virtual/jdk-1.5:*" +RDEPEND=">=virtual/jre-1.5:* + !sci-biology/VarScan" S="${WORKDIR}"/net/sf/varscan
