commit: 76a7cb736ee17c7acb763b6752049c41a19cbb8b Author: Jakov Smolic <jakov.smolic <AT> sartura <DOT> hr> AuthorDate: Mon Feb 15 20:21:41 2021 +0000 Commit: Jakov Smolić <jakov.smolic <AT> sartura <DOT> hr> CommitDate: Sat Feb 20 21:57:41 2021 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=76a7cb73
sci-biology/snap: Port to EAPI 7 Closes: https://bugs.gentoo.org/755779 Signed-off-by: Jakov Smolic <jakov.smolic <AT> sartura.hr> sci-biology/snap/files/snap-20131129-fno-common.patch | 15 +++++++++++++++ sci-biology/snap/snap-20131129.ebuild | 14 +++++++------- 2 files changed, 22 insertions(+), 7 deletions(-) diff --git a/sci-biology/snap/files/snap-20131129-fno-common.patch b/sci-biology/snap/files/snap-20131129-fno-common.patch new file mode 100644 index 000000000..4b3b1b587 --- /dev/null +++ b/sci-biology/snap/files/snap-20131129-fno-common.patch @@ -0,0 +1,15 @@ +--- a/Zoe/zoeTools.h ++++ b/Zoe/zoeTools.h +@@ -40,9 +40,9 @@ The MIT License (MIT) - opensource.org/licenses/MIT + #include <stdlib.h> + #include <string.h> + +-const char * zoeFunction; +-const char * zoeConstructor; +-const char * zoeMethod; ++extern char * zoeFunction; ++extern char * zoeConstructor; ++extern char * zoeMethod; + + void zoeLibInfo (void); + void zoeSetProgramName (const char*); diff --git a/sci-biology/snap/snap-20131129.ebuild b/sci-biology/snap/snap-20131129.ebuild index 84305c131..bc92eff18 100644 --- a/sci-biology/snap/snap-20131129.ebuild +++ b/sci-biology/snap/snap-20131129.ebuild @@ -1,9 +1,9 @@ -# Copyright 1999-2015 Gentoo Foundation +# Copyright 1999-2021 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=5 +EAPI=7 -inherit eutils toolchain-funcs +inherit toolchain-funcs DESCRIPTION="HMM-based prokaryotic and eukaryotic gene prediction tool" HOMEPAGE="http://korflab.ucdavis.edu/software.html"; @@ -12,14 +12,13 @@ SRC_URI="http://korflab.ucdavis.edu/Software/snap-2013-11-29.tar.gz"; LICENSE="MIT" SLOT="0" KEYWORDS="~amd64" -IUSE="" - -DEPEND="" -RDEPEND="${DEPEND}" S="${WORKDIR}"/snap +PATCHES=( "${FILESDIR}"/${P}-fno-common.patch ) + src_prepare(){ + default sed -e "s#CC=\"gcc.*#CC=$(tc-getCC)#" -i Zoe/Makefile || die sed -e "s#CC=\"gcc.*#CC=$(tc-getCC)#" -i Makefile || die } @@ -31,4 +30,5 @@ src_install(){ doins HMM/[a-zA-Z]*.hmm dobin snap fathom forge *.pl dodoc 00README + einstalldocs }
