commit: c2bedc8fe20d87568f4a7503474e355006693c1e Author: Jakov Smolic <jakov.smolic <AT> sartura <DOT> hr> AuthorDate: Sat Feb 20 21:08:45 2021 +0000 Commit: Jakov Smolić <jakov.smolic <AT> sartura <DOT> hr> CommitDate: Sat Feb 20 21:57:41 2021 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=c2bedc8f
sci-biology/subread: Fix build with gcc-10 Closes: https://bugs.gentoo.org/755539 Signed-off-by: Jakov Smolic <jakov.smolic <AT> sartura.hr> sci-biology/subread/files/subread-2.0.1-fno-common.patch | 11 +++++++++++ sci-biology/subread/subread-2.0.1.ebuild | 13 ++++--------- 2 files changed, 15 insertions(+), 9 deletions(-) diff --git a/sci-biology/subread/files/subread-2.0.1-fno-common.patch b/sci-biology/subread/files/subread-2.0.1-fno-common.patch new file mode 100644 index 000000000..8f86840c5 --- /dev/null +++ b/sci-biology/subread/files/subread-2.0.1-fno-common.patch @@ -0,0 +1,11 @@ +--- a/src/gene-algorithms.h ++++ b/src/gene-algorithms.h +@@ -60,7 +60,7 @@ void add_allvote_q(gene_allvote_t* allvote,int qid , int pos, gene_vote_number_t + + unsigned char get_next_char(FILE * fp); + +-unsigned char * replica_index; ++extern unsigned char * replica_index; + + extern double begin_ftime; + diff --git a/sci-biology/subread/subread-2.0.1.ebuild b/sci-biology/subread/subread-2.0.1.ebuild index 18f11e5a6..a16d0af5f 100644 --- a/sci-biology/subread/subread-2.0.1.ebuild +++ b/sci-biology/subread/subread-2.0.1.ebuild @@ -5,14 +5,7 @@ EAPI=7 DESCRIPTION="NGS suite for analysis of mapped reads, summary of exon/intron/gene counts" HOMEPAGE="http://bioinf.wehi.edu.au/featureCounts/"; # no https -if [ "$PV" == "9999" ]; then - inherit subversion - ESVN_REPO_URI="https://subread.svn.sourceforge.net/svnroot/subread/trunk"; - KEYWORDS="" -else - SRC_URI="https://sourceforge.net/projects/subread/files/${P}/${P}-source.tar.gz"; - KEYWORDS="" -fi +SRC_URI="https://sourceforge.net/projects/subread/files/${P}/${P}-source.tar.gz"; LICENSE="GPL-3" SLOT="0" @@ -20,7 +13,9 @@ SLOT="0" DEPEND="sys-libs/zlib" RDEPEND="${DEPEND}" -S="${S}"-source +S="${S}-source" + +PATCHES=( "${FILESDIR}"/${P}-fno-common.patch ) src_prepare(){ default
