[gentoo-commits] proj/sci:master commit in: sci-biology/ncbi-tools++/files/, sci-biology/ncbi-tools++/

[Martin Mokrejs]

commit:     b0f5d1f1974db03f189da3df7aa6d64532f4949d
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Sun Mar 26 22:48:16 2017 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Sun Mar 26 22:48:16 2017 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=b0f5d1f1

sci-biology/ncbi-tools++: fix table2asn linking

Package-Manager: Portage-2.3.5, Repoman-2.3.1

 .../ncbi-tools++-18.0.0-fix-app-table2asn-linking.patch     | 13 +++++++++++++
 sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild         |  1 +
 2 files changed, 14 insertions(+)

diff --git 
a/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-app-table2asn-linking.patch
 
b/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-app-table2asn-linking.patch
new file mode 100644
index 000000000..222cb2c06
--- /dev/null
+++ 
b/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-app-table2asn-linking.patch
@@ -0,0 +1,13 @@
+--- ncbi_cxx--18_0_0/src/app/table2asn/Makefile.table2asn.app.ori      
2017-03-27 00:41:58.742206850 +0200
++++ ncbi_cxx--18_0_0/src/app/table2asn/Makefile.table2asn.app  2017-03-27 
00:43:13.142206236 +0200
+@@ -12,8 +12,8 @@
+ 
+ LIB  = xdiscrepancy xalgophytree fastme prosplign xalgoalignutil xalgoseq 
xmlwrapp \
+        xvalidate xobjwrite xobjreadex valerr biotree macro \
+-       $(OBJEDIT_LIBS) $(XFORMAT_LIBS) $(BLAST_LIBS) id2cli \
+-       xregexp $(PCRE_LIB) $(SRAREAD_LIBS) $(DATA_LOADERS_UTIL_LIB) 
$(OBJMGR_LIBS)
++       $(OBJEDIT_LIBS) $(XFORMAT_LIBS) $(BLAST_LIBS) taxon1 id2cli \
++       xregexp $(PCRE_LIB) xqueryparse $(DATA_LOADERS_UTIL_LIB) $(OBJMGR_LIBS)
+ 
+ LIBS = $(LIBXSLT_LIBS) $(DATA_LOADERS_UTIL_LIBS) $(LIBXML_LIBS) $(CMPRS_LIBS) 
$(PCRE_LIBS) \
+        $(SRA_SDK_SYSLIBS) \

diff --git a/sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild 
b/sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild
index 02426ab42..40db6cfa3 100644
--- a/sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild
+++ b/sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild
@@ -129,6 +129,7 @@ src_prepare() {
                "${FILESDIR}"/${P}-fix-srcchk-linking.patch
                "${FILESDIR}"/${P}-fix-app-rmblastn-linking.patch
                "${FILESDIR}"/${P}-remove-old-symlinks.patch
+               "${FILESDIR}"/${P}-fix-app-table2asn-linking.patch
                )
        #ncbi-tools++-18.0.0-fix-undefined-lxncbi.patch
        epatch ${PATCHES[@]}