[gentoo-commits] proj/sci:master commit in: sci-biology/ncbi-tools++/files/, sci-biology/ncbi-tools++/

[Martin Mokrejs]

commit:     0ece3b3803a4d4be8aeeb140f51b3b46dee6ee6f
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Thu Mar 23 18:28:08 2017 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Thu Mar 23 18:28:08 2017 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=0ece3b38

sci-biology/ncbi-tools++: yet another linking fix

Package-Manager: Portage-2.3.3, Repoman-2.3.1

 .../ncbi-tools++-18.0.0-fix-app-convert_seq-linking.patch     | 11 +++++++++++
 sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild           |  1 +
 2 files changed, 12 insertions(+)

diff --git 
a/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-app-convert_seq-linking.patch
 
b/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-app-convert_seq-linking.patch
new file mode 100644
index 000000000..e495c9645
--- /dev/null
+++ 
b/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-app-convert_seq-linking.patch
@@ -0,0 +1,11 @@
+--- ncbi_cxx--18_0_0/src/app/convert_seq/Makefile.convert_seq.app.ori  
2017-03-23 19:24:31.534280319 +0100
++++ ncbi_cxx--18_0_0/src/app/convert_seq/Makefile.convert_seq.app      
2017-03-23 19:25:14.395360214 +0100
+@@ -2,7 +2,7 @@
+ 
+ APP = convert_seq
+ SRC = convert_seq
+-LIB = $(ncbi_xloader_wgs) $(SRAREAD_LIBS) xobjwrite \
++LIB = $(ncbi_xloader_wgs) $(SRAREAD_LIBS) xobjwrite variation_utils \
+       $(OBJREAD_LIBS) $(XFORMAT_LIBS) xalnmgr xobjutil tables xregexp \
+       $(PCRE_LIB) $(OBJMGR_LIBS)
+ 

diff --git a/sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild 
b/sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild
index 7a70e8f5e..ce5b4ddb8 100644
--- a/sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild
+++ b/sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild
@@ -118,6 +118,7 @@ src_prepare() {
                "${FILESDIR}"/${P}-fix-apps-blast-linking.patch
                "${FILESDIR}"/${P}-fix-sample-app-cgi-linking.patch
                "${FILESDIR}"/${P}-fix-app-compartp-linking.patch
+               "${FILESDIR}"/${P}-fix-app-convert_seq-linking.patch
                )
        #ncbi-tools++-18.0.0-fix-undefined-lxncbi.patch
        epatch ${PATCHES[@]}