commit: 960302060726d9058e835878c42dec29471034e6 Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Mon Mar 9 14:49:18 2015 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Mon Mar 9 14:49:18 2015 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=96030206
new package, needs openmpi with java support to provide mpi.jar, see bug #542700 Package-Manager: portage-2.2.15 sci-biology/BBmap/BBmap-34.56.ebuild | 13 ++++++++++--- sci-biology/BBmap/ChangeLog | 4 ++++ 2 files changed, 14 insertions(+), 3 deletions(-) diff --git a/sci-biology/BBmap/BBmap-34.56.ebuild b/sci-biology/BBmap/BBmap-34.56.ebuild index 674e8f2..e41097f 100644 --- a/sci-biology/BBmap/BBmap-34.56.ebuild +++ b/sci-biology/BBmap/BBmap-34.56.ebuild @@ -12,10 +12,12 @@ SRC_URI="http://sourceforge.net/projects/bbmap/files/BBMap_"${PV}".tar.gz"; LICENSE="BSD" SLOT="0" -KEYWORDS="~amd64" +KEYWORDS="" IUSE="" +# needs USE=java, see bug #542700 DEPEND=" + sys-cluster/openmpi[java] >=virtual/jdk-1.7:* dev-java/ant-core" RDEPEND="${DEPEND} @@ -23,12 +25,17 @@ RDEPEND="${DEPEND} S="${WORKDIR}"/bbmap +#src_prepare(){ +# # fix the line in build.xml to point to mpi.jar location +# # <property name="mpijar" location="/tmp/mpi.jar" ></property> +#} + src_compile(){ - ant compile || die + ant dist || die } src_install(){ dobin *.sh dodoc docs/readme.txt - java-pkg_dojar lib/BBTools.jar + java-pkg_dojar dist/lib/BBTools.jar } diff --git a/sci-biology/BBmap/ChangeLog b/sci-biology/BBmap/ChangeLog index 8a90f18..8a5e706 100644 --- a/sci-biology/BBmap/ChangeLog +++ b/sci-biology/BBmap/ChangeLog @@ -2,6 +2,10 @@ # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 # $Header: $ + 09 Mar 2015; Martin Mokrejs <[email protected]> BBmap-34.56.ebuild: + new package, needs openmpi with java support to provide mpi.jar, see bug + #542700 + *BBmap-34.56 (05 Mar 2015) 05 Mar 2015; Martin Mokrejs <[email protected]> +BBmap-34.56.ebuild,
