commit: a685e8ebaa1adefe32f5dd6db4b3e38c93b1cd07
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Thu Mar 5 23:53:16 2015 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Thu Mar 5 23:53:16 2015 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=a685e8eb
version bump
Package-Manager: portage-2.2.15
.../BBmap/{BBmap-31.40.ebuild => BBmap-34.56.ebuild} | 17 +++++++++++++----
sci-biology/BBmap/ChangeLog | 6 ++++++
2 files changed, 19 insertions(+), 4 deletions(-)
diff --git a/sci-biology/BBmap/BBmap-31.40.ebuild
b/sci-biology/BBmap/BBmap-34.56.ebuild
similarity index 62%
rename from sci-biology/BBmap/BBmap-31.40.ebuild
rename to sci-biology/BBmap/BBmap-34.56.ebuild
index e28c005..674e8f2 100644
--- a/sci-biology/BBmap/BBmap-31.40.ebuild
+++ b/sci-biology/BBmap/BBmap-34.56.ebuild
@@ -6,14 +6,13 @@ EAPI=5
inherit java-pkg-2 java-ant-2
-DESCRIPTION="Short read aligner, K-mer-based error-correction and
normalization, FASTA/FASTQ conversion"
+DESCRIPTION="Short read aligner, K-mer-based error-correction and
normalization, FASTA/Q conversion"
HOMEPAGE="http://sourceforge.net/projects/bbmap/";
-SRC_URI="http://sourceforge.net/projects/bbmap/files/BBMap_31.40_java7.tar.gz";
-#SRC_URI="http://sourceforge.net/projects/bbmap/files/BBMap_31.40_java6.tar.gz";
+SRC_URI="http://sourceforge.net/projects/bbmap/files/BBMap_"${PV}".tar.gz";
LICENSE="BSD"
SLOT="0"
-KEYWORDS=""
+KEYWORDS="~amd64"
IUSE=""
DEPEND="
@@ -23,3 +22,13 @@ RDEPEND="${DEPEND}
>=virtual/jre-1.7:*"
S="${WORKDIR}"/bbmap
+
+src_compile(){
+ ant compile || die
+}
+
+src_install(){
+ dobin *.sh
+ dodoc docs/readme.txt
+ java-pkg_dojar lib/BBTools.jar
+}
diff --git a/sci-biology/BBmap/ChangeLog b/sci-biology/BBmap/ChangeLog
index 53acebd..8a90f18 100644
--- a/sci-biology/BBmap/ChangeLog
+++ b/sci-biology/BBmap/ChangeLog
@@ -2,6 +2,12 @@
# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+*BBmap-34.56 (05 Mar 2015)
+
+ 05 Mar 2015; Martin Mokrejs <[email protected]>
+BBmap-34.56.ebuild,
+ -BBmap-31.40.ebuild:
+ version bump
+
18 Feb 2015; Justin Lecher <[email protected]> BBmap-31.40.ebuild:
sci-biology/BBmap: fix SLOT operators
