commit: 0272e6869c544d92b7d4f585ba1987fa6db1e8b3 Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Mon Mar 24 00:39:36 2014 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Mon Mar 24 00:39:36 2014 +0000 URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=0272e686
sci-biology/scythe: new package, bundled Makefile forces -O3, wrong version number, but works --- sci-biology/scythe/ChangeLog | 10 ++++++++++ sci-biology/scythe/metadata.xml | 9 +++++++++ sci-biology/scythe/scythe-0.992.ebuild | 26 ++++++++++++++++++++++++++ 3 files changed, 45 insertions(+) diff --git a/sci-biology/scythe/ChangeLog b/sci-biology/scythe/ChangeLog new file mode 100644 index 0000000..679d1b1 --- /dev/null +++ b/sci-biology/scythe/ChangeLog @@ -0,0 +1,10 @@ +# ChangeLog for sci-biology/scythe +# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + +*scythe-0.992 (24 Mar 2014) + + 24 Mar 2014; Martin Mokrejs <[email protected]> + +scythe-0.992.ebuild, +metadata.xml: + bundled Makefile forces -O3, wrong version number, but works + diff --git a/sci-biology/scythe/metadata.xml b/sci-biology/scythe/metadata.xml new file mode 100644 index 0000000..2bc8930 --- /dev/null +++ b/sci-biology/scythe/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <herd>sci-biology</herd> + <maintainer> + <email>[email protected]</email> + <name>Martin Mokrejs</name> + </maintainer> +</pkgmetadata> diff --git a/sci-biology/scythe/scythe-0.992.ebuild b/sci-biology/scythe/scythe-0.992.ebuild new file mode 100644 index 0000000..608ac3f --- /dev/null +++ b/sci-biology/scythe/scythe-0.992.ebuild @@ -0,0 +1,26 @@ +# Copyright 1999-2014 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=5 + +inherit eutils git-r3 + +DESCRIPTION="Bayesian adapter trimmer for Illumina/Solexa" +HOMEPAGE="https://github.com/vsbuffalo/scythe"; +EGIT_REPO_URI="https://github.com/vsbuffalo/scythe"; + +LICENSE="MIT" +SLOT="0" +KEYWORDS="~amd64" +IUSE="" + +DEPEND="" +RDEPEND="${DEPEND} + sys-libs/zlib" + +src_install(){ + dobin scythe + dodoc README.md + dodoc illumina_adapters.fa +}
