Hi,

> The problem I see is how autoconf files are actually applied with their
> headers and licenses.

Interesting. So are you saying it would be OK to remove the original license 
headers and replace it with an ASF one?

> If I look within HTTPD for instance there's no headers

Like this file [1]? :-) Not Autoconf but aa build tool and the same GPL 
exception.

BTW There a fair number of incubating and TLPs containing files with GPL 
exception headers. [2]

Thanks,
Justin

1. 
https://github.com/apache/httpd/blob/fbc5e20ead005fd3a2bec05924f9e90dfd195406/server/util_expr_parse.h
2. 
https://github.com/search?utf8=✓&q=org%3Aapache+%22As+a+special+exception%22&type=Code&ref=searchresults
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