Hi,
this patch fixes several different ICEs related to handling aliases in WHOPR
partitioning.  It took me over week debug this, but when variable alias
is added to a boundary and its destination is not added, we get queue of
unforutnate events where the destinatoin gets analyzed and added at ltrans time
resulting in interesting miscompilation seen at Mozilla with some vtables.
The problem is that constructor won't get streamed when the declaration is
not in varpool at partitioning time and thus once the variable is re-added
it has zero constructor.
Of course the problem manifests itself in various weird ways depending
on ordering of linker command maing it very difficult to reduce anything.

While working on this I also noticed that PR 52634 is about related problem
where aliases are incorectly partitioned into multiple partitions.
The patch also fixes the varpool ICEs mentioned in the other two PRs.
I failed to produce testcase version of PR52722 testcase, since it does not
link now either, but it won't ICE.

I will commit the patch and wait for some time, but I would like to backport
it to 4.7, since it solves quite nasty misoptimization problem.
At mainline after this patch i would like to follow with series of cleanups
and API changes I have in queue for symtab work.

Honza

        PR lto/52722
        PR lto/51765
        PR lto/52634    
        * lto-cgraph.c (compute_ltrans_boundary): When alias is in the boundary,
        add its target too.
        * lto.c (add_references_to_partition): Add also aliased nodes.
        (add_cgraph_node_to_partition,
        add_varpool_node_to_partition): Work on nodes, not functions/variables;
        when adding alias, add also the aliased object.
        * gcc.dg/lto/pr52634_1.c: New testcase.
        * gcc.dg/lto/pr52634_0.c: New testcase.
Index: lto-cgraph.c
===================================================================
*** lto-cgraph.c        (revision 185767)
--- lto-cgraph.c        (working copy)
*************** compute_ltrans_boundary (struct lto_out_
*** 799,804 ****
--- 799,806 ----
          lto_set_varpool_encoder_encode_initializer (varpool_encoder, vnode);
          add_references (encoder, varpool_encoder, &vnode->ref_list);
        }
+       else if (vnode->alias || vnode->alias_of)
+         add_references (encoder, varpool_encoder, &vnode->ref_list);
      }
  
    /* Go over all the nodes again to include callees that are not in
Index: lto/lto.c
===================================================================
*** lto/lto.c   (revision 185767)
--- lto/lto.c   (working copy)
*************** free_ltrans_partitions (void)
*** 1444,1450 ****
    VEC_free (ltrans_partition, heap, ltrans_partitions);
  }
  
! /* See all references that go to comdat objects and bring them into partition 
too.  */
  static void
  add_references_to_partition (ltrans_partition part, struct ipa_ref_list *refs)
  {
--- 1444,1451 ----
    VEC_free (ltrans_partition, heap, ltrans_partitions);
  }
  
! /* See all references that go to comdat objects and bring them into partition 
too.
!    Also see all aliases of the newly added entry and bring them, too.  */
  static void
  add_references_to_partition (ltrans_partition part, struct ipa_ref_list *refs)
  {
*************** add_references_to_partition (ltrans_part
*** 1453,1467 ****
    for (i = 0; ipa_ref_list_reference_iterate (refs, i, ref); i++)
      {
        if (ref->refered_type == IPA_REF_CGRAPH
!         && DECL_COMDAT (cgraph_function_node (ipa_ref_node (ref), NULL)->decl)
          && !cgraph_node_in_set_p (ipa_ref_node (ref), part->cgraph_set))
        add_cgraph_node_to_partition (part, ipa_ref_node (ref));
        else
        if (ref->refered_type == IPA_REF_VARPOOL
!           && DECL_COMDAT (ipa_ref_varpool_node (ref)->decl)
!           && !varpool_node_in_set_p (ipa_ref_varpool_node (ref), 
part->varpool_set))
          add_varpool_node_to_partition (part, ipa_ref_varpool_node (ref));
      }
  }
  
  /* Worker for add_cgraph_node_to_partition.  */
--- 1454,1498 ----
    for (i = 0; ipa_ref_list_reference_iterate (refs, i, ref); i++)
      {
        if (ref->refered_type == IPA_REF_CGRAPH
!         && (DECL_COMDAT (cgraph_function_node (ipa_ref_node (ref),
!                          NULL)->decl)
!             || (ref->use == IPA_REF_ALIAS
!                 && lookup_attribute
!                      ("weakref", DECL_ATTRIBUTES (ipa_ref_node (ref)->decl))))
          && !cgraph_node_in_set_p (ipa_ref_node (ref), part->cgraph_set))
        add_cgraph_node_to_partition (part, ipa_ref_node (ref));
        else
        if (ref->refered_type == IPA_REF_VARPOOL
!           && (DECL_COMDAT (ipa_ref_varpool_node (ref)->decl)
!               || (ref->use == IPA_REF_ALIAS
!                   && lookup_attribute
!                        ("weakref",
!                         DECL_ATTRIBUTES (ipa_ref_varpool_node (ref)->decl))))
!           && !varpool_node_in_set_p (ipa_ref_varpool_node (ref),
!                                      part->varpool_set))
          add_varpool_node_to_partition (part, ipa_ref_varpool_node (ref));
      }
+   for (i = 0; ipa_ref_list_refering_iterate (refs, i, ref); i++)
+     {
+       if (ref->refering_type == IPA_REF_CGRAPH
+         && ref->use == IPA_REF_ALIAS
+         && !cgraph_node_in_set_p (ipa_ref_refering_node (ref),
+                                   part->cgraph_set)
+         && !lookup_attribute ("weakref",
+                               DECL_ATTRIBUTES
+                                 (ipa_ref_refering_node (ref)->decl)))
+       add_cgraph_node_to_partition (part, ipa_ref_refering_node (ref));
+       else
+       if (ref->refering_type == IPA_REF_VARPOOL
+           && ref->use == IPA_REF_ALIAS
+           && !varpool_node_in_set_p (ipa_ref_refering_varpool_node (ref),
+                                      part->varpool_set)
+           && !lookup_attribute ("weakref",
+                                 DECL_ATTRIBUTES
+                                   (ipa_ref_refering_varpool_node 
(ref)->decl)))
+         add_varpool_node_to_partition (part,
+                                        ipa_ref_refering_varpool_node (ref));
+     }
  }
  
  /* Worker for add_cgraph_node_to_partition.  */
*************** add_cgraph_node_to_partition (ltrans_par
*** 1501,1509 ****
    cgraph_node_set_iterator csi;
    struct cgraph_node *n;
  
-   /* We always decide on functions, not associated thunks and aliases.  */
-   node = cgraph_function_node (node, NULL);
- 
    /* If NODE is already there, we have nothing to do.  */
    csi = cgraph_node_set_find (part->cgraph_set, node);
    if (!csi_end_p (csi))
--- 1532,1537 ----
*************** add_cgraph_node_to_partition (ltrans_par
*** 1522,1528 ****
--- 1550,1563 ----
        && !cgraph_node_in_set_p (e->callee, part->cgraph_set))
        add_cgraph_node_to_partition (part, e->callee);
  
+   /* The only way to assemble non-weakref alias is to add the aliased object 
into
+      the unit.  */
    add_references_to_partition (part, &node->ref_list);
+   n = cgraph_function_node (node, NULL);
+   if (n != node
+       && !lookup_attribute ("weakref",
+                           DECL_ATTRIBUTES (node->decl)))
+     add_cgraph_node_to_partition (part, n);
  
    if (node->same_comdat_group)
      for (n = node->same_comdat_group; n != node; n = n->same_comdat_group)
*************** static void
*** 1535,1542 ****
  add_varpool_node_to_partition (ltrans_partition part, struct varpool_node 
*vnode)
  {
    varpool_node_set_iterator vsi;
! 
!   vnode = varpool_variable_node (vnode, NULL);
  
    /* If NODE is already there, we have nothing to do.  */
    vsi = varpool_node_set_find (part->varpool_set, vnode);
--- 1570,1576 ----
  add_varpool_node_to_partition (ltrans_partition part, struct varpool_node 
*vnode)
  {
    varpool_node_set_iterator vsi;
!   struct varpool_node *v;
  
    /* If NODE is already there, we have nothing to do.  */
    vsi = varpool_node_set_find (part->varpool_set, vnode);
*************** add_varpool_node_to_partition (ltrans_pa
*** 1554,1559 ****
--- 1588,1601 ----
      }
    vnode->aux = (void *)((size_t)vnode->aux + 1);
  
+   /* The only way to assemble non-weakref alias is to add the aliased object 
into
+      the unit.  */
+   v = varpool_variable_node (vnode, NULL);
+   if (v != vnode
+       && !lookup_attribute ("weakref",
+                           DECL_ATTRIBUTES (vnode->decl)))
+     add_varpool_node_to_partition (part, v);
+ 
    add_references_to_partition (part, &vnode->ref_list);
  
    if (vnode->same_comdat_group
Index: testsuite/gcc.dg/lto/pr52634_1.c
===================================================================
--- testsuite/gcc.dg/lto/pr52634_1.c    (revision 0)
+++ testsuite/gcc.dg/lto/pr52634_1.c    (revision 0)
@@ -0,0 +1,2 @@
+int cfliteKeyCallBacks = 5;
+extern int cfliteValueCallBacks __attribute__((alias("cfliteKeyCallBacks")));
Index: testsuite/gcc.dg/lto/pr52634_0.c
===================================================================
--- testsuite/gcc.dg/lto/pr52634_0.c    (revision 0)
+++ testsuite/gcc.dg/lto/pr52634_0.c    (revision 0)
@@ -0,0 +1,5 @@
+/* { dg-lto-do link } */
+/* { dg-lto-options {{-flto -r -nostdlib -flto-partition=1to1}} */
+extern int cfliteValueCallBacks;
+void baz (int *);
+int main () { baz(&cfliteValueCallBacks); }

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