Package: akonadi-server
Version: 4:16.04.3-5
Severity: important

Dear Maintainer,

after the upgrade / dist-upgrade Akonadi stopped working rendering Kontact
utterly useless.

Kontact:
  "Akonadi PIM Service is not operational
akonadi-konsole:
  "Failed to connect to database: Can't connect to local MySQL server through
socket '/tmp/akonadi-USER.7psq92/mysql.socket' (2 'file or folder not found')
QMYSQL: Unable to connect"

While the folder in tmp is existing, the file mysql.socket is not.
I tried reinstalling all installed packages relating to Akonadi, MariaDB and
MySQL and dpkg-reconfigure them, without any change.
I tried to create /tmp/akonadi-USER.7psq92/mysql.socket as a link to
/var/run/mysqld/mysqld.sock but Akonadi was still not able to connect so I
deleted the link again.

Thanks for your help!
Maria



Akonadi Server Self-Test Report
===============================

Test 1:  SUCCESS
--------

Database driver found.
Details: The QtSQL driver 'QMYSQL' is required by your current Akonadi server
configuration and was found on your system.

File content of '/home/poetic-terrorist/.config/akonadi/akonadiserverrc':
[Debug]
Tracer=dbus

[%General]
Driver=QMYSQL

[QMYSQL]
Host=
Name=akonadi
Options="UNIX_SOCKET=/tmp/akonadi-poetic-terrorist.7psq92/mysql.socket"
ServerPath=/usr/sbin/mysqld
StartServer=true


Test 2:  SUCCESS
--------

Akonadi is not running as root
Details: Akonadi is not running as a root/administrator user, which is the
recommended setup for a secure system.

Test 3:  SUCCESS
--------

MySQL server found.
Details: You have currently configured Akonadi to use the MySQL server
'/usr/sbin/mysqld'.
Make sure you have the MySQL server installed, set the correct path and ensure
you have the necessary read and execution rights on the server executable. The
server executable is typically called 'mysqld'; its location varies depending
on the distribution.

Test 4:  SUCCESS
--------

MySQL server is executable.
Details: MySQL server found: /usr/sbin/mysqld  Ver 10.1.24-MariaDB-6 for
debian-linux-gnu on x86_64 (Debian 9.0)


Test 5:  ERROR
--------

MySQL server log contains errors.
Details: The MySQL server error log file '<a href="/home/poetic-
terrorist/.local/share/akonadi/db_data/mysql.err">/home/poetic-
terrorist/.local/share/akonadi/db_data/mysql.err</a>' contains errors.

File content of '/home/poetic-
terrorist/.local/share/akonadi/db_data/mysql.err':
2017-08-24 12:41:00 139717515728000 [Note] InnoDB:
innodb_empty_free_list_algorithm has been changed to legacy because of small
buffer pool size. In order to use backoff, increase buffer pool at least up to
20MB.

2017-08-24 12:41:00 139717515728000 [Note] InnoDB: Using mutexes to ref count
buffer pool pages
2017-08-24 12:41:00 139717515728000 [Note] InnoDB: The InnoDB memory heap is
disabled
2017-08-24 12:41:00 139717515728000 [Note] InnoDB: Mutexes and rw_locks use GCC
atomic builtins
2017-08-24 12:41:00 139717515728000 [Note] InnoDB: GCC builtin
__atomic_thread_fence() is used for memory barrier
2017-08-24 12:41:00 139717515728000 [Note] InnoDB: Compressed tables use zlib
1.2.8
2017-08-24 12:41:00 139717515728000 [Note] InnoDB: Using Linux native AIO
2017-08-24 12:41:00 139717515728000 [Note] InnoDB: Using SSE crc32 instructions
2017-08-24 12:41:00 139717515728000 [Note] InnoDB: Initializing buffer pool,
size = 80.0M
2017-08-24 12:41:00 139717515728000 [Note] InnoDB: Completed initialization of
buffer pool
2017-08-24 12:41:00 139717515728000 [Note] InnoDB: Highest supported file
format is Barracuda.
2017-08-24 12:41:00 139717515728000 [Note] InnoDB: Starting crash recovery from
checkpoint LSN=33915400979
2017-08-24 12:41:00 139717515728000 [Note] InnoDB: Restoring possible half-
written data pages from the doublewrite buffer...
InnoDB: Set innodb_force_recovery to ignore this error.
2017-08-24 12:41:00 139717515728000 [ERROR] Plugin 'InnoDB' init function
returned error.
2017-08-24 12:41:00 139717515728000 [ERROR] Plugin 'InnoDB' registration as a
STORAGE ENGINE failed.
2017-08-24 12:41:00 139717515728000 [Note] Plugin 'FEEDBACK' is disabled.
2017-08-24 12:41:00 139717515728000 [ERROR] Unknown/unsupported storage engine:
innodb
2017-08-24 12:41:00 139717515728000 [ERROR] Aborting

Error in my_thread_global_end(): 1 threads didn't exit


Test 6:  SUCCESS
--------

MySQL server default configuration found.
Details: The default configuration for the MySQL server was found and is
readable at <a href="/etc/xdg/akonadi/mysql-
global.conf">/etc/xdg/akonadi/mysql-global.conf</a>.

File content of '/etc/xdg/akonadi/mysql-global.conf':
#
# Global Akonadi MySQL server settings,
# These settings can be adjusted using $HOME/.config/akonadi/mysql-local.conf
#
# Based on advice by Kris Köhntopp <k...@mysql.com>
#
[mysqld]

# strict query parsing/interpretation
# TODO: make Akonadi work with those settings enabled
#
sql_mode=strict_trans_tables,strict_all_tables,strict_error_for_division_by_zero,no_auto_create_user,no_auto_value_on_zero,no_engine_substitution,no_zero_date,no_zero_in_date,only_full_group_by,pipes_as_concat
# sql_mode=strict_trans_tables

# DEBUGGING:
# log all queries, useful for debugging but generates an enormous amount of
data
# log=mysql.full
# log queries slower than n seconds, log file name relative to datadir (for
debugging only)
# log_slow_queries=mysql.slow
# long_query_time=1
# log queries not using indices, debug only, disable for production use
# log_queries_not_using_indexes=1
#
# mesure database size and adjust innodb_buffer_pool_size
# SELECT sum(data_length) as bla, sum(index_length) as blub FROM
information_schema.tables WHERE table_schema not in ("mysql",
"information_schema");

# NOTES:
# Keep Innob_log_waits and keep Innodb_buffer_pool_wait_free small (see show
global status like "inno%", show global variables)

#expire_logs_days=3

#sync_bin_log=0

# Use UTF-8 encoding for tables
character_set_server=utf8
collation_server=utf8_general_ci

# use InnoDB for transactions and better crash recovery
default_storage_engine=innodb

# memory pool InnoDB uses to store data dictionary information and other
internal data structures (default:8M)
# Deprecated in MySQL >= 5.6.3, removed in 5.7 (works in MariaDB)
# innodb_additional_mem_pool_size=8M

# memory buffer InnoDB uses to cache data and indexes of its tables
(default:128M)
# Larger values means less I/O
innodb_buffer_pool_size=80M

# Create a .ibd file for each table (default:0)
innodb_file_per_table=1

# Write out the log buffer to the log file at each commit (default:1)
innodb_flush_log_at_trx_commit=2

# Buffer size used to write to the log files on disk (default:1M for builtin,
8M for plugin)
# larger values means less I/O
innodb_log_buffer_size=1M

# Size of each log file in a log group (default:5M) larger means less I/O but
more time for recovery.
innodb_log_file_size=64M

# # error log file name, relative to datadir (default:hostname.err)
log_error=mysql.err

# print warnings and connection errors (default:1)
log_warnings=2

# Convert table named to lowercase
lower_case_table_names=1

# Maximum size of one packet or any generated/intermediate string. (default:1M)
max_allowed_packet=32M

# Maximum simultaneous connections allowed (default:100)
max_connections=256

# The two options below make no sense with prepared statements and/or
transactions
# (make sense when having the same query multiple times)

# Memory allocated for caching query results (default:0 (disabled))
query_cache_size=0

# Do not cache results (default:1)
query_cache_type=0

# Do not use the privileges mechanisms
skip_grant_tables

# Do not listen for TCP/IP connections at all
skip_networking

# The number of open tables for all threads. (default:64)
table_open_cache=200

# How many threads the server should cache for reuse (default:0)
thread_cache_size=3

# wait 365d before dropping the DB connection (default:8h)
wait_timeout=31536000

# We use InnoDB, so don't let MyISAM eat up memory
key_buffer_size=16K

# KUBUNTU:
# Unset the export dir check as only the full mysql-server package creates it
secure_file_priv=

[client]
default-character-set=utf8


Test 7:  SKIP
--------

MySQL server custom configuration not available.
Details: The custom configuration for the MySQL server was not found but is
optional.

Test 8:  SUCCESS
--------

MySQL server configuration is usable.
Details: The MySQL server configuration was found at <a href="/home/poetic-
terrorist/.local/share/akonadi/mysql.conf">/home/poetic-
terrorist/.local/share/akonadi/mysql.conf</a> and is readable.

File content of '/home/poetic-terrorist/.local/share/akonadi/mysql.conf':
#
# Global Akonadi MySQL server settings,
# These settings can be adjusted using $HOME/.config/akonadi/mysql-local.conf
#
# Based on advice by Kris Köhntopp <k...@mysql.com>
#
[mysqld]

# strict query parsing/interpretation
# TODO: make Akonadi work with those settings enabled
#
sql_mode=strict_trans_tables,strict_all_tables,strict_error_for_division_by_zero,no_auto_create_user,no_auto_value_on_zero,no_engine_substitution,no_zero_date,no_zero_in_date,only_full_group_by,pipes_as_concat
# sql_mode=strict_trans_tables

# DEBUGGING:
# log all queries, useful for debugging but generates an enormous amount of
data
# log=mysql.full
# log queries slower than n seconds, log file name relative to datadir (for
debugging only)
# log_slow_queries=mysql.slow
# long_query_time=1
# log queries not using indices, debug only, disable for production use
# log_queries_not_using_indexes=1
#
# mesure database size and adjust innodb_buffer_pool_size
# SELECT sum(data_length) as bla, sum(index_length) as blub FROM
information_schema.tables WHERE table_schema not in ("mysql",
"information_schema");

# NOTES:
# Keep Innob_log_waits and keep Innodb_buffer_pool_wait_free small (see show
global status like "inno%", show global variables)

#expire_logs_days=3

#sync_bin_log=0

# Use UTF-8 encoding for tables
character_set_server=utf8
collation_server=utf8_general_ci

# use InnoDB for transactions and better crash recovery
default_storage_engine=innodb

# memory pool InnoDB uses to store data dictionary information and other
internal data structures (default:8M)
# Deprecated in MySQL >= 5.6.3, removed in 5.7 (works in MariaDB)
# innodb_additional_mem_pool_size=8M

# memory buffer InnoDB uses to cache data and indexes of its tables
(default:128M)
# Larger values means less I/O
innodb_buffer_pool_size=80M

# Create a .ibd file for each table (default:0)
innodb_file_per_table=1

# Write out the log buffer to the log file at each commit (default:1)
innodb_flush_log_at_trx_commit=2

# Buffer size used to write to the log files on disk (default:1M for builtin,
8M for plugin)
# larger values means less I/O
innodb_log_buffer_size=1M

# Size of each log file in a log group (default:5M) larger means less I/O but
more time for recovery.
innodb_log_file_size=64M

# # error log file name, relative to datadir (default:hostname.err)
log_error=mysql.err

# print warnings and connection errors (default:1)
log_warnings=2

# Convert table named to lowercase
lower_case_table_names=1

# Maximum size of one packet or any generated/intermediate string. (default:1M)
max_allowed_packet=32M

# Maximum simultaneous connections allowed (default:100)
max_connections=256

# The two options below make no sense with prepared statements and/or
transactions
# (make sense when having the same query multiple times)

# Memory allocated for caching query results (default:0 (disabled))
query_cache_size=0

# Do not cache results (default:1)
query_cache_type=0

# Do not use the privileges mechanisms
skip_grant_tables

# Do not listen for TCP/IP connections at all
skip_networking

# The number of open tables for all threads. (default:64)
table_open_cache=200

# How many threads the server should cache for reuse (default:0)
thread_cache_size=3

# wait 365d before dropping the DB connection (default:8h)
wait_timeout=31536000

# We use InnoDB, so don't let MyISAM eat up memory
key_buffer_size=16K

# KUBUNTU:
# Unset the export dir check as only the full mysql-server package creates it
secure_file_priv=

[client]
default-character-set=utf8


Test 9:  SUCCESS
--------

akonadictl found and usable
Details: The program '/usr/bin/akonadictl' to control the Akonadi server was
found and could be executed successfully.
Result:
Akonadi 5.2.2


Test 10:  ERROR
--------

Akonadi control process not registered at D-Bus.
Details: The Akonadi control process is not registered at D-Bus which typically
means it was not started or encountered a fatal error during startup.

Test 11:  ERROR
--------

Akonadi server process not registered at D-Bus.
Details: The Akonadi server process is not registered at D-Bus which typically
means it was not started or encountered a fatal error during startup.

Test 12:  SKIP
--------

Protocol version check not possible.
Details: Without a connection to the server it is not possible to check if the
protocol version meets the requirements.

Test 13:  ERROR
--------

No resource agents found.
Details: No resource agents have been found, Akonadi is not usable without at
least one. This usually means that no resource agents are installed or that
there is a setup problem. The following paths have been searched:
'/usr/share/akonadi/agents'. The XDG_DATA_DIRS environment variable is set to
'/usr/share:/usr/share:/usr/local/share'; make sure this includes all paths
where Akonadi agents are installed.

Directory listing of '/usr/share/akonadi/agents':
akonadibalooindexingagent.desktop
akonadiindexingagent.desktop
akonotesresource.desktop
archivemailagent.desktop
birthdaysresource.desktop
contactsresource.desktop
davgroupwareresource.desktop
followupreminder.desktop
googlecalendarresource.desktop
googlecontactsresource.desktop
icaldirresource.desktop
icalresource.desktop
imapresource.desktop
invitationsagent.desktop
kalarmdirresource.desktop
kalarmresource.desktop
kolabresource.desktop
maildirresource.desktop
maildispatcheragent.desktop
mailfilteragent.desktop
mboxresource.desktop
migrationagent.desktop
mixedmaildirresource.desktop
newmailnotifieragent.desktop
notesagent.desktop
notesresource.desktop
openxchangeresource.desktop
pop3resource.desktop
sendlateragent.desktop
vcarddirresource.desktop
vcardresource.desktop

Environment variable XDG_DATA_DIRS is set to
'/usr/share:/usr/share:/usr/local/share'

Test 14:  ERROR
--------

Current Akonadi server error log found.
Details: The Akonadi server reported errors during its current startup. The log
can be found in <a href="/home/poetic-
terrorist/.local/share/akonadi/akonadiserver.error">/home/poetic-
terrorist/.local/share/akonadi/akonadiserver.error</a>.

File content of '/home/poetic-
terrorist/.local/share/akonadi/akonadiserver.error':
Database process exited unexpectedly during initial connection!
executable: "/usr/sbin/mysqld"
arguments: ("--defaults-file=/home/poetic-
terrorist/.local/share/akonadi/mysql.conf", "--datadir=/home/poetic-
terrorist/.local/share/akonadi/db_data/", "--socket=/tmp/akonadi-poetic-
terrorist.7psq92/mysql.socket")
stdout: ""
stderr: "2017-08-24 12:41:00 139717515728000 [Note] /usr/sbin/mysqld (mysqld
10.1.24-MariaDB-6) starting as process 3851 ...\n"
exit code: 1
process error: "Process operation timed out"
Failed to remove Unix socket
Failed to remove runtime connection config file


Test 15:  ERROR
--------

Previous Akonadi server error log found.
Details: The Akonadi server reported errors during its previous startup. The
log can be found in <a href="/home/poetic-
terrorist/.local/share/akonadi/akonadiserver.error.old">/home/poetic-
terrorist/.local/share/akonadi/akonadiserver.error.old</a>.

File content of '/home/poetic-
terrorist/.local/share/akonadi/akonadiserver.error.old':
Database process exited unexpectedly during initial connection!
executable: "/usr/sbin/mysqld"
arguments: ("--defaults-file=/home/poetic-
terrorist/.local/share/akonadi/mysql.conf", "--datadir=/home/poetic-
terrorist/.local/share/akonadi/db_data/", "--socket=/tmp/akonadi-poetic-
terrorist.7psq92/mysql.socket")
stdout: ""
stderr: "2017-08-24 12:39:06 139891864433792 [Note] /usr/sbin/mysqld (mysqld
10.1.24-MariaDB-6) starting as process 3803 ...\n"
exit code: 1
process error: "Process operation timed out"
Failed to remove Unix socket
Failed to remove runtime connection config file


Test 16:  SUCCESS
--------

No current Akonadi control error log found.
Details: The Akonadi control process did not report any errors during its
current startup.

Test 17:  SUCCESS
--------

No previous Akonadi control error log found.
Details: The Akonadi control process did not report any errors during its
previous startup.




-- System Information:
Debian Release: buster/sid
  APT prefers unstable-debug
  APT policy: (500, 'unstable-debug'), (500, 'testing-debug'), (500, 
'testing'), (100, 'unstable')
Architecture: amd64 (x86_64)

Kernel: Linux 4.12.0-1-amd64 (SMP w/4 CPU cores)
Locale: LANG=de_DE.UTF-8, LC_CTYPE=de_DE.UTF-8 (charmap=UTF-8), LANGUAGE=de 
(charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)

Versions of packages akonadi-server depends on:
ii  akonadi-backend-mysql  4:16.04.3-5
ii  libc6                  2.24-14
ii  libgcc1                1:7.2.0-1
ii  libkf5akonadiprivate5  4:16.04.3-5
ii  libkf5akonadiwidgets5  4:16.04.3-5
ii  libkf5configcore5      5.28.0-2
ii  libkf5coreaddons5      5.28.0-2
ii  libkf5i18n5            5.28.0-2
ii  libqt5core5a           5.7.1+dfsg-4
ii  libqt5dbus5            5.7.1+dfsg-4
ii  libqt5gui5             5.7.1+dfsg-4
ii  libqt5network5         5.7.1+dfsg-4
ii  libqt5sql5             5.7.1+dfsg-4
ii  libqt5widgets5         5.7.1+dfsg-4
ii  libqt5xml5             5.7.1+dfsg-4
ii  libstdc++6             7.2.0-1

akonadi-server recommends no packages.

Versions of packages akonadi-server suggests:
ii  akonadi-backend-mysql       4:16.04.3-5
pn  akonadi-backend-postgresql  <none>
pn  akonadi-backend-sqlite      <none>

-- no debconf information

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