treerecs_draw.cxx:793:(.text+0x1eb): undefined reference to `Fl_SVG_Image::resize(int, int)')

Debian Bug Tracking System Sat, 12 Apr 2025 14:42:28 -0700

Your message dated Sat, 12 Apr 2025 21:40:22 +0000
with message-id <e1u3iam-00ckxt...@fasolo.debian.org>
and subject line Bug#1102776: fixed in seaview 1:5.0.5-3
has caused the Debian Bug report #1102776,
regarding seaview: FTBFS: /usr/bin/ld: ././treerecs_draw.cxx:793:(.text+0x1eb): 
undefined reference to `Fl_SVG_Image::resize(int, int)'
to be marked as done.


This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

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-- 
1102776: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1102776
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems

--- Begin Message ---

Package: src:seaview
Version: 1:5.0.5-2
Severity: serious
Tags: ftbfs trixie sid

Dear maintainer:

During a rebuild of all packages in unstable, your package failed to build:

--------------------------------------------------------------------------------
[...]
 debian/rules clean
dh clean
   dh_auto_clean
   dh_clean
 debian/rules binary
dh binary
   dh_update_autotools_config
   dh_autoreconf
   dh_auto_configure
   dh_auto_build
        make -j2 "INSTALL=install --strip-program=true"
make[1]: Entering directory '/<<PKGBUILDDIR>>'
g++ -c  -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 
-Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. 
-fstack-protector-strong -fstack-clash-protection -Wformat 
-Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2 
-DFLTK1 -Dunix -Icsrc -I. -DNO_PDF 
-DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" 
-fPIC -Dunix -O3 -I.  -Icsrc    -DNO_PDF seaview.cxx
g++ -c  -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 
-Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. 
-fstack-protector-strong -fstack-clash-protection -Wformat 
-Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2 
-DFLTK1 -Dunix -Icsrc -I. -DNO_PDF 
-DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" 
-fPIC -Dunix -O3 -I.  -Icsrc    -DNO_PDF custom.cxx
cc1plus: warning: â-Werror=â argument 
â-Werror=implicit-function-declarationâ is not valid for C++
cc1plus: warning: â-Werror=â argument 
â-Werror=implicit-function-declarationâ is not valid for C++
seaview.cxx: In function âvoid delete_tmp_filename(const char*)â:
seaview.cxx:636:9: warning: ignoring return value of âint system(const 
char*)â declared with attribute âwarn_unused_resultâ [-Wunused-result]
  636 |   system(fname);
      |   ~~~~~~^~~~~~~
seaview.cxx: In function âchar* 
run_and_close_native_file_chooser(Fl_Native_File_Chooser*, int)â:
seaview.cxx:2899:45: warning: ignoring return value of âint chdir(const 
char*)â declared with attribute âwarn_unused_resultâ [-Wunused-result]
 2899 |           if( *last_visited_directory )chdir(last_visited_directory);
      |                                        ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
seaview.cxx: In function âvoid help_callback(Fl_Widget*, void*)â:
seaview.cxx:3618:53: warning: â%sâ directive argument is null 
[-Wformat-overflow=]
 3618 |                                          "Help file %s\nnot found in 
PATH directories nor in current directory", help_file
      |                                                     ^~
g++ -c  -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 
-Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. 
-fstack-protector-strong -fstack-clash-protection -Wformat 
-Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2 
-DFLTK1 -Dunix -Icsrc -I. -DNO_PDF 
-DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" 
-fPIC -Dunix -O3 -I.  -Icsrc    -DNO_PDF use_mase_files.cxx
cc1plus: warning: â-Werror=â argument 
â-Werror=implicit-function-declarationâ is not valid for C++
seaview.cxx: In function âvoid draw_header(Fl_Widget*, SEA_VIEW*)â:
seaview.cxx:1124:23: warning: â%7dâ directive writing between 7 and 11 
bytes into a region of size 10 [-Wformat-overflow=]
 1124 |   sprintf(site_line, "%7d", view->first_site + view->tot_sites - 1);
      |                       ^~~
In function âvoid draw_header(Fl_Widget*, SEA_VIEW*)â,
    inlined from âvoid draw_header(Fl_Widget*, SEA_VIEW*)â at 
seaview.cxx:1108:6:
seaview.cxx:1124:22: note: directive argument in the range [-2147483648, 
2147483646]
 1124 |   sprintf(site_line, "%7d", view->first_site + view->tot_sites - 1);
      |                      ^~~~~
In file included from /usr/include/stdio.h:970,
                 from seaview.h:3,
                 from seaview.cxx:67:
In function âint sprintf(char*, const char*, ...)â,
    inlined from âvoid draw_header(Fl_Widget*, SEA_VIEW*)â at 
seaview.cxx:1124:10,
    inlined from âvoid draw_header(Fl_Widget*, SEA_VIEW*)â at 
seaview.cxx:1108:6:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note: 
â__builtin___sprintf_chkâ output between 8 and 12 bytes into a destination 
of size 10
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
g++ -c  -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 
-Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. 
-fstack-protector-strong -fstack-clash-protection -Wformat 
-Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2 
-DFLTK1 -Dunix -Icsrc -I. -DNO_PDF 
-DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" 
-fPIC -Dunix -O3 -I.  -Icsrc    -DNO_PDF regions.cxx
cc1plus: warning: â-Werror=â argument 
â-Werror=implicit-function-declarationâ is not valid for C++
g++ -c  -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 
-Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. 
-fstack-protector-strong -fstack-clash-protection -Wformat 
-Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2 
-DFLTK1 -Dunix -Icsrc -I. -DNO_PDF 
-DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" 
-fPIC -Dunix -O3 -I.  -Icsrc    -DNO_PDF load_seq.cxx
cc1plus: warning: â-Werror=â argument 
â-Werror=implicit-function-declarationâ is not valid for C++
regions.cxx: In function âint create_gblocks_mask(SEA_VIEW*, region*, int, 
int, int, int, int)â:
regions.cxx:313:9: warning: ignoring return value of âint system(const 
char*)â declared with attribute âwarn_unused_resultâ [-Wunused-result]
  313 |   system(cmd);
      |   ~~~~~~^~~~~
regions.cxx:291:26: warning: â%sâ directive writing up to 4095 bytes into a 
region of size 496 [-Wformat-overflow=]
  291 |   sprintf(cmd, "\"%s\" \"%s\" -p=s -t=%c", q, fname, 
view->protein?'p':'d');
      |                          ^~                   ~~~~~
In file included from /usr/include/stdio.h:970,
                 from seaview.h:3,
                 from regions.cxx:1:
In function âint sprintf(char*, const char*, ...)â,
    inlined from âint create_gblocks_mask(SEA_VIEW*, region*, int, int, int, 
int, int)â at regions.cxx:291:10:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note: 
â__builtin___sprintf_chkâ output 16 or more bytes (assuming 4111) into a 
destination of size 500
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
g++ -c  -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 
-Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. 
-fstack-protector-strong -fstack-clash-protection -Wformat 
-Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2 
-DFLTK1 -Dunix -Icsrc -I. -DNO_PDF 
-DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" 
-fPIC -Dunix -O3 -I.  -Icsrc    -DNO_PDF align.cxx
cc1plus: warning: â-Werror=â argument 
â-Werror=implicit-function-declarationâ is not valid for C++
align.cxx: In function âvoid replace_stars(char*)â:
align.cxx:1302:14: warning: ignoring return value of âsize_t fread(void*, 
size_t, size_t, FILE*)â declared with attribute âwarn_unused_resultâ 
[-Wunused-result]
 1302 |         fread(all, 1, l, in);
      |         ~~~~~^~~~~~~~~~~~~~~
g++ -c  -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 
-Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. 
-fstack-protector-strong -fstack-clash-protection -Wformat 
-Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2 
-DFLTK1 -Dunix -Icsrc -I. -DNO_PDF 
-DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" 
-fPIC -Dunix -O3 -I.  -Icsrc    -DNO_PDF xfmatpt.cxx
cc1plus: warning: â-Werror=â argument 
â-Werror=implicit-function-declarationâ is not valid for C++
align.cxx: In function âchar* get_opt_resname(int)â:
align.cxx:991:32: warning: â%dâ directive writing between 1 and 11 bytes 
into a region of size 7 [-Wformat-overflow=]
  991 | sprintf(resname, "msa_opt_args_%d", algonum + 1);
      |                                ^~
align.cxx:991:18: note: directive argument in the range [-2147483647, 
2147483647]
  991 | sprintf(resname, "msa_opt_args_%d", algonum + 1);
      |                  ^~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:970,
                 from seaview.h:3,
                 from align.cxx:1:
In function âint sprintf(char*, const char*, ...)â,
    inlined from âchar* get_opt_resname(int)â at align.cxx:991:8:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note: 
â__builtin___sprintf_chkâ output between 15 and 25 bytes into a destination 
of size 20
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
align.cxx: In function âvoid delete_align_callback(Fl_Widget*, void*)â:
align.cxx:825:31: warning: â__builtin___sprintf_chkâ may write a 
terminating nul past the end of the destination [-Wformat-overflow=]
  825 | sprintf(msa_name, "msa_name_%d", view->alignment_algorithm + 1);
      |                               ^
In function âint sprintf(char*, const char*, ...)â,
    inlined from âvoid delete_align_callback(Fl_Widget*, void*)â at 
align.cxx:825:8:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note: 
â__builtin___sprintf_chkâ output between 11 and 21 bytes into a destination 
of size 20
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
align.cxx: In function âvoid delete_align_callback(Fl_Widget*, void*)â:
align.cxx:835:39: warning: â__builtin___sprintf_chkâ may write a 
terminating nul past the end of the destination [-Wformat-overflow=]
  835 |         sprintf(msa_name, "msa_name_%d", num + 1);
      |                                       ^
In function âint sprintf(char*, const char*, ...)â,
    inlined from âvoid delete_align_callback(Fl_Widget*, void*)â at 
align.cxx:835:9:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note: 
â__builtin___sprintf_chkâ output between 11 and 21 bytes into a destination 
of size 20
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
align.cxx: In function âvoid delete_align_callback(Fl_Widget*, void*)â:
align.cxx:837:39: warning: â__builtin___sprintf_chkâ may write a 
terminating nul past the end of the destination [-Wformat-overflow=]
  837 |         sprintf(msa_name, "msa_name_%d", num);
      |                                       ^
In function âint sprintf(char*, const char*, ...)â,
    inlined from âvoid delete_align_callback(Fl_Widget*, void*)â at 
align.cxx:837:9:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note: 
â__builtin___sprintf_chkâ output between 11 and 21 bytes into a destination 
of size 20
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
align.cxx: In function âvoid delete_align_callback(Fl_Widget*, void*)â:
align.cxx:840:39: warning: â__builtin___sprintf_chkâ may write a 
terminating nul past the end of the destination [-Wformat-overflow=]
  840 |         sprintf(msa_name, "msa_args_%d", num + 1);
      |                                       ^
In function âint sprintf(char*, const char*, ...)â,
    inlined from âvoid delete_align_callback(Fl_Widget*, void*)â at 
align.cxx:840:9:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note: 
â__builtin___sprintf_chkâ output between 11 and 21 bytes into a destination 
of size 20
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
align.cxx: In function âvoid delete_align_callback(Fl_Widget*, void*)â:
align.cxx:842:39: warning: â__builtin___sprintf_chkâ may write a 
terminating nul past the end of the destination [-Wformat-overflow=]
  842 |         sprintf(msa_name, "msa_args_%d", num);
      |                                       ^
In function âint sprintf(char*, const char*, ...)â,
    inlined from âvoid delete_align_callback(Fl_Widget*, void*)â at 
align.cxx:842:9:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note: 
â__builtin___sprintf_chkâ output between 11 and 21 bytes into a destination 
of size 20
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
align.cxx: In function âvoid edit_align_callback(Fl_Widget*, void*)â:
align.cxx:944:30: warning: â__builtin___sprintf_chkâ may write a 
terminating nul past the end of the destination [-Wformat-overflow=]
  944 | sprintf(resname, "msa_name_%d", view->alignment_algorithm + 1);
      |                              ^
In function âint sprintf(char*, const char*, ...)â,
    inlined from âvoid edit_align_callback(Fl_Widget*, void*)â at 
align.cxx:944:8:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note: 
â__builtin___sprintf_chkâ output between 11 and 21 bytes into a destination 
of size 20
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
align.cxx: In function âvoid align_opt_callback(Fl_Widget*, long int)â:
align.cxx:973:17: warning: â%dâ directive writing between 1 and 10 bytes 
into a region of size 5 [-Wformat-overflow=]
  973 |   sprintf(tmp, "%d", reponse);
      |                 ^~
align.cxx:973:16: note: directive argument in the range [0, 2147483646]
  973 |   sprintf(tmp, "%d", reponse);
      |                ^~~~
In function âint sprintf(char*, const char*, ...)â,
    inlined from âvoid align_opt_callback(Fl_Widget*, long int)â at 
align.cxx:973:10:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note: 
â__builtin___sprintf_chkâ output between 2 and 11 bytes into a destination 
of size 5
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
align.cxx: In function âint save_fasta_file_no_gaponly(char*, char**, int, 
int*, int*)â:
align.cxx:1345:42: warning: â%dâ directive writing between 1 and 10 bytes 
into a region of size 8 [-Wformat-overflow=]
 1345 |                 sprintf(seqname[num], "S_%d", num);
      |                                          ^~
align.cxx:1345:39: note: directive argument in the range [0, 2147483646]
 1345 |                 sprintf(seqname[num], "S_%d", num);
      |                                       ^~~~~~
In function âint sprintf(char*, const char*, ...)â,
    inlined from âint save_fasta_file_no_gaponly(char*, char**, int, int*, 
int*)â at align.cxx:1345:10:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note: 
â__builtin___sprintf_chkâ output between 4 and 13 bytes into a destination 
of size 10
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
xfmatpt.cxx: In function âvoid change_comput_params(Fl_Widget*, void*)â:
xfmatpt.cxx:750:24: warning: â__builtin___sprintf_chkâ may write a 
terminating nul past the end of the destination [-Wformat-overflow=]
  750 |         sprintf(tmp,"%d", fdui->identites);
      |                        ^
In file included from /usr/include/stdio.h:970,
                 from seaview.h:3,
                 from matpt.h:3,
                 from xfmatpt.cxx:1:
In function âint sprintf(char*, const char*, ...)â,
    inlined from âvoid change_comput_params(Fl_Widget*, void*)â at 
xfmatpt.cxx:750:9:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note: 
â__builtin___sprintf_chkâ output between 2 and 11 bytes into a destination 
of size 10
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
xfmatpt.cxx: In function âint really_close(FD_matpt*)â:
xfmatpt.cxx:889:5: warning: âvoid free(void*)â called on pointer 
â*matpt.FD_matpt::seq1â with nonzero offset 1 [-Wfree-nonheap-object]
  889 | free(matpt->seq1 + 1);
      | ~~~~^~~~~~~~~~~~~~~~~
xfmatpt.cxx:890:5: warning: âvoid free(void*)â called on pointer 
â*matpt.FD_matpt::seq2â with nonzero offset 1 [-Wfree-nonheap-object]
  890 | free(matpt->seq2 + 1);
      | ~~~~^~~~~~~~~~~~~~~~~
align.cxx: In function âint command_line_align(int, char**)â:
align.cxx:1507:37: warning: â%dâ directive writing between 1 and 11 bytes 
into a region of size 7 [-Wformat-overflow=]
 1507 |     sprintf(opt_name, "msa_opt_args_%d", view->alignment_algorithm + 1);
      |                                     ^~
align.cxx:1507:23: note: directive argument in the range [-2147483647, 
2147483647]
 1507 |     sprintf(opt_name, "msa_opt_args_%d", view->alignment_algorithm + 1);
      |                       ^~~~~~~~~~~~~~~~~
In function âint sprintf(char*, const char*, ...)â,
    inlined from âint command_line_align(int, char**)â at align.cxx:1507:12:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note: 
â__builtin___sprintf_chkâ output between 15 and 25 bytes into a destination 
of size 20
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
xfmatpt.cxx: In function âvoid show_dot_plot(char*, char*, char*, char*, int, 
int, int, void*)â:
xfmatpt.cxx:124:21: warning: âvoid free(void*)â called on pointer 
â*matpt.FD_matpt::seq1â with nonzero offset 1 [-Wfree-nonheap-object]
  124 |                 free(matpt->seq1+1);
      |                 ~~~~^~~~~~~~~~~~~~~
xfmatpt.cxx:125:21: warning: âvoid free(void*)â called on pointer 
â*matpt.FD_matpt::seq2â with nonzero offset 1 [-Wfree-nonheap-object]
  125 |                 free(matpt->seq2+1);
      |                 ~~~~^~~~~~~~~~~~~~~
g++ -c  -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 
-Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. 
-fstack-protector-strong -fstack-clash-protection -Wformat 
-Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2 
-DFLTK1 -Dunix -Icsrc -I. -DNO_PDF 
-DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" 
-fPIC -Dunix -O3 -I.  -Icsrc    -DNO_PDF comlines.cxx
cc1plus: warning: â-Werror=â argument 
â-Werror=implicit-function-declarationâ is not valid for C++
g++ -c  -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 
-Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. 
-fstack-protector-strong -fstack-clash-protection -Wformat 
-Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2 
-DFLTK1 -Dunix -Icsrc -I. -DNO_PDF 
-DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" 
-fPIC -Dunix -O3 -I.  -Icsrc    -DNO_PDF resource.cxx
cc1plus: warning: â-Werror=â argument 
â-Werror=implicit-function-declarationâ is not valid for C++
g++ -c  -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 
-Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. 
-fstack-protector-strong -fstack-clash-protection -Wformat 
-Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2 
-DFLTK1 -Dunix -Icsrc -I. -DNO_PDF 
-DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" 
-fPIC -Dunix -O3 -I.  -Icsrc    -DNO_PDF nexus.cxx
cc1plus: warning: â-Werror=â argument 
â-Werror=implicit-function-declarationâ is not valid for C++
g++ -c  -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 
-Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. 
-fstack-protector-strong -fstack-clash-protection -Wformat 
-Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2 
-DFLTK1 -Dunix -Icsrc -I. -DNO_PDF 
-DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" 
-fPIC -Dunix -O3 -I.  -Icsrc    -DNO_PDF viewasprots.cxx
cc1plus: warning: â-Werror=â argument 
â-Werror=implicit-function-declarationâ is not valid for C++
g++ -c  -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 
-Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. 
-fstack-protector-strong -fstack-clash-protection -Wformat 
-Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2 
-DFLTK1 -Dunix -Icsrc -I. -DNO_PDF 
-DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" 
-fPIC -Dunix -O3 -I.  -Icsrc    -DNO_PDF racnuc_fetch.cxx
cc1plus: warning: â-Werror=â argument 
â-Werror=implicit-function-declarationâ is not valid for C++
g++ -c  -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 
-Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. 
-fstack-protector-strong -fstack-clash-protection -Wformat 
-Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2 
-DFLTK1 -Dunix -Icsrc -I. -DNO_PDF 
-DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" 
-fPIC -Dunix -O3 -I.  -Icsrc    -DNO_PDF concatenate.cxx
cc1plus: warning: â-Werror=â argument 
â-Werror=implicit-function-declarationâ is not valid for C++
g++ -c  -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 
-Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. 
-fstack-protector-strong -fstack-clash-protection -Wformat 
-Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2 
-DFLTK1 -Dunix -Icsrc -I. -DNO_PDF 
-DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" 
-fPIC -Dunix -O3 -I.  -Icsrc    -DNO_PDF statistics.cxx
cc1plus: warning: â-Werror=â argument 
â-Werror=implicit-function-declarationâ is not valid for C++
g++ -c  -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 
-Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. 
-fstack-protector-strong -fstack-clash-protection -Wformat 
-Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2 
-DFLTK1 -Dunix -Icsrc -I. -DNO_PDF 
-DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" 
-fPIC -Dunix -O3 -I.  -Icsrc    -DNO_PDF trees.cxx
cc1plus: warning: â-Werror=â argument 
â-Werror=implicit-function-declarationâ is not valid for C++
trees.cxx: In function âvoid run_phyml_callback(Fl_Widget*, void*)â:
trees.cxx:1301:16: warning: ignoring return value of âsize_t fread(void*, 
size_t, size_t, FILE*)â declared with attribute âwarn_unused_resultâ 
[-Wunused-result]
 1301 |           fread(bootstrap_trees, l, 1, in);
      |           ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
trees.cxx: In function âvoid command_line_phylogeny(int, char**)â:
trees.cxx:2794:12: warning: ignoring return value of âsize_t fread(void*, 
size_t, size_t, FILE*)â declared with attribute âwarn_unused_resultâ 
[-Wunused-result]
 2794 |       fread(utree, s, 1, in);
      |       ~~~~~^~~~~~~~~~~~~~~~~
g++ -c  -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 
-Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. 
-fstack-protector-strong -fstack-clash-protection -Wformat 
-Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2 
-DFLTK1 -Dunix -Icsrc -I. -DNO_PDF 
-DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" 
-fPIC -Dunix -O3 -I.  -Icsrc    -DNO_PDF treedraw.cxx
cc1plus: warning: â-Werror=â argument 
â-Werror=implicit-function-declarationâ is not valid for C++
trees.cxx: In function âchar* run_parsimony_method(SEA_VIEW*, int, const 
char*, int, int, int, int, Fl_Box*, dnapars_S_option, const char**, float, int, 
char**, void (*)(const char*, ...))â:
trees.cxx:2379:54: warning: â%dâ directive writing between 1 and 10 bytes 
into a region of size 9 [-Wformat-overflow=]
 2379 |                   sprintf(tmp, "Bootstrap replicate: %d", j + 1);
      |                                                      ^~
In function âchar* parsimony_with_bootstrap(allseq*, char**, char**, int, 
int, int, int*, int, int, Fl_Box*, int*, dnapars_S_option, int, float, int*, 
char**)â,
    inlined from âchar* run_parsimony_method(SEA_VIEW*, int, const char*, 
int, int, int, int, Fl_Box*, dnapars_S_option, const char**, float, int, 
char**, void (*)(const char*, ...))â at trees.cxx:2067:36:
trees.cxx:2379:32: note: directive argument in the range [1, 2147483647]
 2379 |                   sprintf(tmp, "Bootstrap replicate: %d", j + 1);
      |                                ^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:970,
                 from seaview.h:3,
                 from trees.cxx:6:
In function âint sprintf(char*, const char*, ...)â,
    inlined from âchar* parsimony_with_bootstrap(allseq*, char**, char**, 
int, int, int, int*, int, int, Fl_Box*, int*, dnapars_S_option, int, float, 
int*, char**)â at trees.cxx:2379:12,
    inlined from âchar* run_parsimony_method(SEA_VIEW*, int, const char*, 
int, int, int, int, Fl_Box*, dnapars_S_option, const char**, float, int, 
char**, void (*)(const char*, ...))â at trees.cxx:2067:36:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note: 
â__builtin___sprintf_chkâ output between 23 and 32 bytes into a destination 
of size 30
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
trees.cxx: In function âchar* run_parsimony_method(SEA_VIEW*, int, const 
char*, int, int, int, int, Fl_Box*, dnapars_S_option, const char**, float, int, 
char**, void (*)(const char*, ...))â:
trees.cxx:2073:57: warning: â best trees, â directive writing 13 bytes into 
a region of size between 12 and 21 [-Wformat-overflow=]
 2073 |       if (count_best > 1) sprintf(best, "consensus of %d best trees, ", 
count_best);
      |                                                         ^~~~~~~~~~~~~
In function âint sprintf(char*, const char*, ...)â,
    inlined from âchar* run_parsimony_method(SEA_VIEW*, int, const char*, 
int, int, int, int, Fl_Box*, dnapars_S_option, const char**, float, int, 
char**, void (*)(const char*, ...))â at trees.cxx:2073:34:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note: 
â__builtin___sprintf_chkâ output between 28 and 37 bytes into a destination 
of size 35
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
trees.cxx: In function âvoid run_phyml_callback(Fl_Widget*, void*)â:
trees.cxx:1181:56: warning: â%sâ directive writing up to 4095 bytes into a 
region of size 995 [-Wformat-overflow=]
 1181 |                    sprintf(args + strlen(args), " -u \"%s\"", tmp);
      |                                                        ^~     ~~~
In function âint sprintf(char*, const char*, ...)â,
    inlined from âvoid run_phyml_callback(Fl_Widget*, void*)â at 
trees.cxx:1181:13:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note: 
â__builtin___sprintf_chkâ output between 7 and 4102 bytes into a 
destination of size 1000
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
g++ -c  -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 
-Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. 
-fstack-protector-strong -fstack-clash-protection -Wformat 
-Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2 
-DFLTK1 -Dunix -Icsrc -I. -DNO_PDF 
-DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" 
-fPIC -Dunix -O3 -I.  -Icsrc    -DNO_PDF addbootstrap.cxx
cc1plus: warning: â-Werror=â argument 
â-Werror=implicit-function-declarationâ is not valid for C++
treedraw.cxx: In function âint count_node(noeud*, noeud*)â:
treedraw.cxx:3303:15: warning: argument 2 null where non-null expected 
[-Wnonnull]
 3303 |     if (strcmp(centre->nom, target1) == 0 || strcmp(centre->nom, 
target2) == 0 || strcmp(centre->nom, target3) == 0) {
      |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~
In file included from seaview.h:5,
                 from treedraw.h:4,
                 from treedraw.cxx:18:
/usr/include/string.h:156:12: note: in a call to function âint strcmp(const 
char*, const char*)â declared ânonnullâ
  156 | extern int strcmp (const char *__s1, const char *__s2)
      |            ^~~~~~
treedraw.cxx:3303:52: warning: argument 2 null where non-null expected 
[-Wnonnull]
 3303 |     if (strcmp(centre->nom, target1) == 0 || strcmp(centre->nom, 
target2) == 0 || strcmp(centre->nom, target3) == 0) {
      |                                              
~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/usr/include/string.h:156:12: note: in a call to function âint strcmp(const 
char*, const char*)â declared ânonnullâ
  156 | extern int strcmp (const char *__s1, const char *__s2)
      |            ^~~~~~
treedraw.cxx:3303:89: warning: argument 2 null where non-null expected 
[-Wnonnull]
 3303 |     if (strcmp(centre->nom, target1) == 0 || strcmp(centre->nom, 
target2) == 0 || strcmp(centre->nom, target3) == 0) {
      |                                                                         
          ~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/usr/include/string.h:156:12: note: in a call to function âint strcmp(const 
char*, const char*)â declared ânonnullâ
  156 | extern int strcmp (const char *__s1, const char *__s2)
      |            ^~~~~~
g++ -c  -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 
-Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. 
-fstack-protector-strong -fstack-clash-protection -Wformat 
-Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2 
-DFLTK1 -Dunix -Icsrc -I. -DNO_PDF 
-DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" 
-fPIC -Dunix -O3 -I.  -Icsrc    -DNO_PDF least_squares_brl.cxx
cc1plus: warning: â-Werror=â argument 
â-Werror=implicit-function-declarationâ is not valid for C++
g++ -c  -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 
-Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. 
-fstack-protector-strong -fstack-clash-protection -Wformat 
-Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2 
-DFLTK1 -Dunix -Icsrc -I. -DNO_PDF 
-DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" 
-fPIC -Dunix -O3 -I.  -Icsrc    -DNO_PDF pseudoterminal.cxx
cc1plus: warning: â-Werror=â argument 
â-Werror=implicit-function-declarationâ is not valid for C++
pseudoterminal.cxx: In function âint run_external_prog_in_pseudoterm(char*, 
const char*, const char*)â:
pseudoterminal.cxx:342:24: warning: ignoring return value of âFILE* 
freopen(const char*, const char*, FILE*)â declared with attribute 
âwarn_unused_resultâ [-Wunused-result]
  342 |                 freopen( (dialogfname ? dialogfname : slavename), "r", 
stdin);
      |                 
~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
pseudoterminal.cxx:343:24: warning: ignoring return value of âFILE* 
freopen(const char*, const char*, FILE*)â declared with attribute 
âwarn_unused_resultâ [-Wunused-result]
  343 |                 freopen(slavename, "a", stderr);
      |                 ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
g++ -c  -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 
-Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. 
-fstack-protector-strong -fstack-clash-protection -Wformat 
-Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2 
-DFLTK1 -Dunix -Icsrc -I. -DNO_PDF 
-DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" 
-fPIC -Dunix -O3 -I.  -Icsrc    -DNO_PDF unrooted.cxx
cc1plus: warning: â-Werror=â argument 
â-Werror=implicit-function-declarationâ is not valid for C++
g++ -c  -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 
-Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. 
-fstack-protector-strong -fstack-clash-protection -Wformat 
-Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2 
-DFLTK1 -Dunix -Icsrc -I. -DNO_PDF 
-DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" 
-fPIC -Dunix -O3 -I.  -Icsrc    -DNO_PDF pdf_or_ps.cxx
cc1plus: warning: â-Werror=â argument 
â-Werror=implicit-function-declarationâ is not valid for C++
g++ -c  -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 
-Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. 
-fstack-protector-strong -fstack-clash-protection -Wformat 
-Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2 
-DFLTK1 -Dunix -Icsrc -I. -DNO_PDF 
-DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" 
-fPIC -Dunix -O3 -I.  -Icsrc    -DNO_PDF svg.cxx
cc1plus: warning: â-Werror=â argument 
â-Werror=implicit-function-declarationâ is not valid for C++
g++ -c  -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 
-Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. 
-fstack-protector-strong -fstack-clash-protection -Wformat 
-Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2 
-DFLTK1 -Dunix -Icsrc -I. -DNO_PDF 
-DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" 
-fPIC -Dunix -O3 -I.  -Icsrc    -DNO_PDF threads.cxx
cc1plus: warning: â-Werror=â argument 
â-Werror=implicit-function-declarationâ is not valid for C++
g++ -c  -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 
-Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. 
-fstack-protector-strong -fstack-clash-protection -Wformat 
-Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2 
-DFLTK1 -Dunix -Icsrc -I. -DNO_PDF 
-DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" 
-fPIC -Dunix -O3 -I.  -Icsrc    -DNO_PDF tbe.cxx
cc1plus: warning: â-Werror=â argument 
â-Werror=implicit-function-declarationâ is not valid for C++
g++ -c  -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 
-Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. 
-fstack-protector-strong -fstack-clash-protection -Wformat 
-Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2 
-DFLTK1 -Dunix -Icsrc -I. -DNO_PDF 
-DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" 
-fPIC -Dunix -O3 -I.  -Icsrc    -DNO_PDF treerecs_draw.cxx
cc1plus: warning: â-Werror=â argument 
â-Werror=implicit-function-declarationâ is not valid for C++
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 
-Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. 
-fstack-protector-strong -fstack-clash-protection -Wformat 
-Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2 
-DFLTK1 -Dunix -Icsrc -I. -DNO_PDF 
-DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" 
-fPIC -Dunix -O3 -I.  -Icsrc    -DNO_PDF FL/Fl_SVG_Image.cxx
cc1plus: warning: â-Werror=â argument 
â-Werror=implicit-function-declarationâ is not valid for C++
gcc -c  -O3 -g -O2 -Werror=implicit-function-declaration 
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong 
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection 
-DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF 
-DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" 
-fPIC -Dunix -Icsrc csrc/raa_acnuc.c
gcc -c  -O3 -g -O2 -Werror=implicit-function-declaration 
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong 
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection 
-DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF 
-DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" 
-fPIC -Dunix -Icsrc csrc/parser.c
gcc -c  -O3 -g -O2 -Werror=implicit-function-declaration 
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong 
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection 
-DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF 
-DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" 
-fPIC -Dunix -Icsrc csrc/md5.c
gcc -c  -O3 -g -O2 -Werror=implicit-function-declaration 
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong 
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection 
-DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF 
-DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" 
-fPIC -Dunix -Icsrc csrc/zsockr.c
gcc -c  -O3 -g -O2 -Werror=implicit-function-declaration 
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong 
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection 
-DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF 
-DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" 
-fPIC -Dunix -Icsrc csrc/misc_acnuc.c
gcc -c  -O3 -g -O2 -Werror=implicit-function-declaration 
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong 
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection 
-DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF 
-DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" 
-fPIC -Dunix -Icsrc csrc/dnapars.c
gcc -c  -O3 -g -O2 -Werror=implicit-function-declaration 
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong 
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection 
-DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF 
-DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" 
-fPIC -Dunix -Icsrc csrc/protpars.c
gcc -c  -O3 -g -O2 -Werror=implicit-function-declaration 
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong 
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection 
-DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF 
-DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" 
-fPIC -Dunix -Icsrc csrc/seq.c
gcc -c  -O3 -g -O2 -Werror=implicit-function-declaration 
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong 
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection 
-DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF 
-DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" 
-fPIC -Dunix -Icsrc csrc/phylip.c
gcc -c  -O3 -g -O2 -Werror=implicit-function-declaration 
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong 
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection 
-DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF 
-DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" 
-fPIC -Dunix -Icsrc csrc/lwl.c
gcc -c  -O3 -g -O2 -Werror=implicit-function-declaration 
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong 
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection 
-DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF 
-DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" 
-fPIC -Dunix -Icsrc csrc/bionj.c
gcc -c  -O3 -g -O2 -Werror=implicit-function-declaration 
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong 
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection 
-DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF 
-DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" 
-fPIC -Dunix -Icsrc csrc/phyml_util.c
g++ -o seaview  -Wl,-z,relro -Wl,-z,now seaview.o custom.o use_mase_files.o 
regions.o load_seq.o align.o xfmatpt.o comlines.o resource.o nexus.o 
viewasprots.o racnuc_fetch.o concatenate.o statistics.o trees.o treedraw.o 
addbootstrap.o least_squares_brl.o pseudoterminal.o unrooted.o pdf_or_ps.o 
svg.o threads.o tbe.o treerecs_draw.o Fl_SVG_Image.o raa_acnuc.o parser.o md5.o 
zsockr.o misc_acnuc.o dnapars.o protpars.o seq.o phylip.o lwl.o bionj.o 
phyml_util.o  `fltk-config --use-images --ldflags` -ldl -lpthread -lz 
-Wl,-z,muldefs
/usr/bin/ld: treerecs_draw.o: in function `SVG_View_data::update()':
././treerecs_draw.cxx:793:(.text+0xae): undefined reference to 
`Fl_SVG_Image::resize(int, int)'
/usr/bin/ld: ././treerecs_draw.cxx:793:(.text+0x1eb): undefined reference to 
`Fl_SVG_Image::resize(int, int)'
/usr/bin/ld: ././treerecs_draw.cxx:793:(.text+0x2be): undefined reference to 
`Fl_SVG_Image::resize(int, int)'
/usr/bin/ld: treerecs_draw.o: in function `Fl_SVG_Box::Fl_SVG_Box(int, int, 
int, int, char const*)':
././treerecs_draw.cxx:693:(.text+0x174c): undefined reference to 
`Fl_SVG_Image::Fl_SVG_Image(char const*, char const*)'
/usr/bin/ld: ././treerecs_draw.cxx:717:(.text+0x17c1): undefined reference to 
`Fl_SVG_Image::resize(int, int)'
/usr/bin/ld: ././treerecs_draw.cxx:713:(.text+0x1986): undefined reference to 
`Fl_SVG_Image::resize(int, int)'
collect2: error: ld returned 1 exit status
make[1]: *** [Makefile:46: seaview] Error 1
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_build: error: make -j2 "INSTALL=install --strip-program=true" returned 
exit code 2
make: *** [debian/rules:17: binary] Error 25
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--------------------------------------------------------------------------------

The above is just how the build ends and not necessarily the most relevant part.
If required, the full build log is available here:

https://people.debian.org/~sanvila/build-logs/202504/

About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.

If you could not reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.

If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:seaview, so that this is still
visible in the BTS web page for this package.

Thanks.

--- End Message ---

--- Begin Message ---

Source: seaview
Source-Version: 1:5.0.5-3
Done: Étienne Mollier <emoll...@debian.org>

We believe that the bug you reported is fixed in the latest version of
seaview, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 1102...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Étienne Mollier <emoll...@debian.org> (supplier of updated seaview package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 1.8
Date: Sat, 12 Apr 2025 23:11:52 +0200
Source: seaview
Architecture: source
Version: 1:5.0.5-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Étienne Mollier <emoll...@debian.org>
Closes: 1102776
Changes:
 seaview (1:5.0.5-3) unstable; urgency=medium
 .
   * Team upload.
   * bypass-fltk-version-check.patch: new: fix symbols disappearance.
     (Closes: #1102776)
   * d/t/control: use /tmp as HOME for the autopkgtest.
   * d/control: declare compliance to standards version 4.7.2.
   * harderning.patch: new: propagate CPPFLAGS.
Checksums-Sha1:
 7054d90ff45a0388a9e0b4ed710abf671428d5ac 2226 seaview_5.0.5-3.dsc
 ff08c614032b1e25b17072203f0ab2baa6b6b573 17812 seaview_5.0.5-3.debian.tar.xz
Checksums-Sha256:
 abe25e1029eb6e57ff791cbcf5d156f183b2aa733de16ed2c5daad9ffd8df8ec 2226 
seaview_5.0.5-3.dsc
 21a022cd149b92e83fc79f01c502fc4bdf38bdf7df64608641c4da5ad2495bbb 17812 
seaview_5.0.5-3.debian.tar.xz
Files:
 d2d3253f2cd66faac285d49240631ba7 2226 science optional seaview_5.0.5-3.dsc
 923343d8e1b9dfb0c10d02913af3723c 17812 science optional 
seaview_5.0.5-3.debian.tar.xz

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--- End Message ---

Bug#1102776: marked as done (seaview: FTBFS: /usr/bin/ld: ././treerecs_draw.cxx:793:(.text+0x1eb): undefined reference to `Fl_SVG_Image::resize(int, int)')

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