Package: src:seaview
Version: 1:5.0.5-2
Severity: serious
Tags: ftbfs trixie sid
Dear maintainer:
During a rebuild of all packages in unstable, your package failed to build:
--------------------------------------------------------------------------------
[...]
debian/rules clean
dh clean
dh_auto_clean
dh_clean
debian/rules binary
dh binary
dh_update_autotools_config
dh_autoreconf
dh_auto_configure
dh_auto_build
make -j2 "INSTALL=install --strip-program=true"
make[1]: Entering directory '/<<PKGBUILDDIR>>'
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2
-Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2
-DFLTK1 -Dunix -Icsrc -I. -DNO_PDF
-DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\"
-fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF seaview.cxx
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2
-Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2
-DFLTK1 -Dunix -Icsrc -I. -DNO_PDF
-DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\"
-fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF custom.cxx
cc1plus: warning: â-Werror=â argument
â-Werror=implicit-function-declarationâ is not valid for C++
cc1plus: warning: â-Werror=â argument
â-Werror=implicit-function-declarationâ is not valid for C++
seaview.cxx: In function âvoid delete_tmp_filename(const char*)â:
seaview.cxx:636:9: warning: ignoring return value of âint system(const
char*)â declared with attribute âwarn_unused_resultâ [-Wunused-result]
636 | system(fname);
| ~~~~~~^~~~~~~
seaview.cxx: In function âchar*
run_and_close_native_file_chooser(Fl_Native_File_Chooser*, int)â:
seaview.cxx:2899:45: warning: ignoring return value of âint chdir(const
char*)â declared with attribute âwarn_unused_resultâ [-Wunused-result]
2899 | if( *last_visited_directory )chdir(last_visited_directory);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
seaview.cxx: In function âvoid help_callback(Fl_Widget*, void*)â:
seaview.cxx:3618:53: warning: â%sâ directive argument is null
[-Wformat-overflow=]
3618 | "Help file %s\nnot found in
PATH directories nor in current directory", help_file
| ^~
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2
-Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2
-DFLTK1 -Dunix -Icsrc -I. -DNO_PDF
-DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\"
-fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF use_mase_files.cxx
cc1plus: warning: â-Werror=â argument
â-Werror=implicit-function-declarationâ is not valid for C++
seaview.cxx: In function âvoid draw_header(Fl_Widget*, SEA_VIEW*)â:
seaview.cxx:1124:23: warning: â%7dâ directive writing between 7 and 11
bytes into a region of size 10 [-Wformat-overflow=]
1124 | sprintf(site_line, "%7d", view->first_site + view->tot_sites - 1);
| ^~~
In function âvoid draw_header(Fl_Widget*, SEA_VIEW*)â,
inlined from âvoid draw_header(Fl_Widget*, SEA_VIEW*)â at
seaview.cxx:1108:6:
seaview.cxx:1124:22: note: directive argument in the range [-2147483648,
2147483646]
1124 | sprintf(site_line, "%7d", view->first_site + view->tot_sites - 1);
| ^~~~~
In file included from /usr/include/stdio.h:970,
from seaview.h:3,
from seaview.cxx:67:
In function âint sprintf(char*, const char*, ...)â,
inlined from âvoid draw_header(Fl_Widget*, SEA_VIEW*)â at
seaview.cxx:1124:10,
inlined from âvoid draw_header(Fl_Widget*, SEA_VIEW*)â at
seaview.cxx:1108:6:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note:
â__builtin___sprintf_chkâ output between 8 and 12 bytes into a destination
of size 10
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2
-Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2
-DFLTK1 -Dunix -Icsrc -I. -DNO_PDF
-DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\"
-fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF regions.cxx
cc1plus: warning: â-Werror=â argument
â-Werror=implicit-function-declarationâ is not valid for C++
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2
-Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2
-DFLTK1 -Dunix -Icsrc -I. -DNO_PDF
-DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\"
-fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF load_seq.cxx
cc1plus: warning: â-Werror=â argument
â-Werror=implicit-function-declarationâ is not valid for C++
regions.cxx: In function âint create_gblocks_mask(SEA_VIEW*, region*, int,
int, int, int, int)â:
regions.cxx:313:9: warning: ignoring return value of âint system(const
char*)â declared with attribute âwarn_unused_resultâ [-Wunused-result]
313 | system(cmd);
| ~~~~~~^~~~~
regions.cxx:291:26: warning: â%sâ directive writing up to 4095 bytes into a
region of size 496 [-Wformat-overflow=]
291 | sprintf(cmd, "\"%s\" \"%s\" -p=s -t=%c", q, fname,
view->protein?'p':'d');
| ^~ ~~~~~
In file included from /usr/include/stdio.h:970,
from seaview.h:3,
from regions.cxx:1:
In function âint sprintf(char*, const char*, ...)â,
inlined from âint create_gblocks_mask(SEA_VIEW*, region*, int, int, int,
int, int)â at regions.cxx:291:10:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note:
â__builtin___sprintf_chkâ output 16 or more bytes (assuming 4111) into a
destination of size 500
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2
-Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2
-DFLTK1 -Dunix -Icsrc -I. -DNO_PDF
-DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\"
-fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF align.cxx
cc1plus: warning: â-Werror=â argument
â-Werror=implicit-function-declarationâ is not valid for C++
align.cxx: In function âvoid replace_stars(char*)â:
align.cxx:1302:14: warning: ignoring return value of âsize_t fread(void*,
size_t, size_t, FILE*)â declared with attribute âwarn_unused_resultâ
[-Wunused-result]
1302 | fread(all, 1, l, in);
| ~~~~~^~~~~~~~~~~~~~~
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2
-Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2
-DFLTK1 -Dunix -Icsrc -I. -DNO_PDF
-DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\"
-fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF xfmatpt.cxx
cc1plus: warning: â-Werror=â argument
â-Werror=implicit-function-declarationâ is not valid for C++
align.cxx: In function âchar* get_opt_resname(int)â:
align.cxx:991:32: warning: â%dâ directive writing between 1 and 11 bytes
into a region of size 7 [-Wformat-overflow=]
991 | sprintf(resname, "msa_opt_args_%d", algonum + 1);
| ^~
align.cxx:991:18: note: directive argument in the range [-2147483647,
2147483647]
991 | sprintf(resname, "msa_opt_args_%d", algonum + 1);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:970,
from seaview.h:3,
from align.cxx:1:
In function âint sprintf(char*, const char*, ...)â,
inlined from âchar* get_opt_resname(int)â at align.cxx:991:8:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note:
â__builtin___sprintf_chkâ output between 15 and 25 bytes into a destination
of size 20
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
align.cxx: In function âvoid delete_align_callback(Fl_Widget*, void*)â:
align.cxx:825:31: warning: â__builtin___sprintf_chkâ may write a
terminating nul past the end of the destination [-Wformat-overflow=]
825 | sprintf(msa_name, "msa_name_%d", view->alignment_algorithm + 1);
| ^
In function âint sprintf(char*, const char*, ...)â,
inlined from âvoid delete_align_callback(Fl_Widget*, void*)â at
align.cxx:825:8:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note:
â__builtin___sprintf_chkâ output between 11 and 21 bytes into a destination
of size 20
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
align.cxx: In function âvoid delete_align_callback(Fl_Widget*, void*)â:
align.cxx:835:39: warning: â__builtin___sprintf_chkâ may write a
terminating nul past the end of the destination [-Wformat-overflow=]
835 | sprintf(msa_name, "msa_name_%d", num + 1);
| ^
In function âint sprintf(char*, const char*, ...)â,
inlined from âvoid delete_align_callback(Fl_Widget*, void*)â at
align.cxx:835:9:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note:
â__builtin___sprintf_chkâ output between 11 and 21 bytes into a destination
of size 20
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
align.cxx: In function âvoid delete_align_callback(Fl_Widget*, void*)â:
align.cxx:837:39: warning: â__builtin___sprintf_chkâ may write a
terminating nul past the end of the destination [-Wformat-overflow=]
837 | sprintf(msa_name, "msa_name_%d", num);
| ^
In function âint sprintf(char*, const char*, ...)â,
inlined from âvoid delete_align_callback(Fl_Widget*, void*)â at
align.cxx:837:9:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note:
â__builtin___sprintf_chkâ output between 11 and 21 bytes into a destination
of size 20
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
align.cxx: In function âvoid delete_align_callback(Fl_Widget*, void*)â:
align.cxx:840:39: warning: â__builtin___sprintf_chkâ may write a
terminating nul past the end of the destination [-Wformat-overflow=]
840 | sprintf(msa_name, "msa_args_%d", num + 1);
| ^
In function âint sprintf(char*, const char*, ...)â,
inlined from âvoid delete_align_callback(Fl_Widget*, void*)â at
align.cxx:840:9:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note:
â__builtin___sprintf_chkâ output between 11 and 21 bytes into a destination
of size 20
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
align.cxx: In function âvoid delete_align_callback(Fl_Widget*, void*)â:
align.cxx:842:39: warning: â__builtin___sprintf_chkâ may write a
terminating nul past the end of the destination [-Wformat-overflow=]
842 | sprintf(msa_name, "msa_args_%d", num);
| ^
In function âint sprintf(char*, const char*, ...)â,
inlined from âvoid delete_align_callback(Fl_Widget*, void*)â at
align.cxx:842:9:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note:
â__builtin___sprintf_chkâ output between 11 and 21 bytes into a destination
of size 20
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
align.cxx: In function âvoid edit_align_callback(Fl_Widget*, void*)â:
align.cxx:944:30: warning: â__builtin___sprintf_chkâ may write a
terminating nul past the end of the destination [-Wformat-overflow=]
944 | sprintf(resname, "msa_name_%d", view->alignment_algorithm + 1);
| ^
In function âint sprintf(char*, const char*, ...)â,
inlined from âvoid edit_align_callback(Fl_Widget*, void*)â at
align.cxx:944:8:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note:
â__builtin___sprintf_chkâ output between 11 and 21 bytes into a destination
of size 20
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
align.cxx: In function âvoid align_opt_callback(Fl_Widget*, long int)â:
align.cxx:973:17: warning: â%dâ directive writing between 1 and 10 bytes
into a region of size 5 [-Wformat-overflow=]
973 | sprintf(tmp, "%d", reponse);
| ^~
align.cxx:973:16: note: directive argument in the range [0, 2147483646]
973 | sprintf(tmp, "%d", reponse);
| ^~~~
In function âint sprintf(char*, const char*, ...)â,
inlined from âvoid align_opt_callback(Fl_Widget*, long int)â at
align.cxx:973:10:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note:
â__builtin___sprintf_chkâ output between 2 and 11 bytes into a destination
of size 5
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
align.cxx: In function âint save_fasta_file_no_gaponly(char*, char**, int,
int*, int*)â:
align.cxx:1345:42: warning: â%dâ directive writing between 1 and 10 bytes
into a region of size 8 [-Wformat-overflow=]
1345 | sprintf(seqname[num], "S_%d", num);
| ^~
align.cxx:1345:39: note: directive argument in the range [0, 2147483646]
1345 | sprintf(seqname[num], "S_%d", num);
| ^~~~~~
In function âint sprintf(char*, const char*, ...)â,
inlined from âint save_fasta_file_no_gaponly(char*, char**, int, int*,
int*)â at align.cxx:1345:10:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note:
â__builtin___sprintf_chkâ output between 4 and 13 bytes into a destination
of size 10
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
xfmatpt.cxx: In function âvoid change_comput_params(Fl_Widget*, void*)â:
xfmatpt.cxx:750:24: warning: â__builtin___sprintf_chkâ may write a
terminating nul past the end of the destination [-Wformat-overflow=]
750 | sprintf(tmp,"%d", fdui->identites);
| ^
In file included from /usr/include/stdio.h:970,
from seaview.h:3,
from matpt.h:3,
from xfmatpt.cxx:1:
In function âint sprintf(char*, const char*, ...)â,
inlined from âvoid change_comput_params(Fl_Widget*, void*)â at
xfmatpt.cxx:750:9:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note:
â__builtin___sprintf_chkâ output between 2 and 11 bytes into a destination
of size 10
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
xfmatpt.cxx: In function âint really_close(FD_matpt*)â:
xfmatpt.cxx:889:5: warning: âvoid free(void*)â called on pointer
â*matpt.FD_matpt::seq1â with nonzero offset 1 [-Wfree-nonheap-object]
889 | free(matpt->seq1 + 1);
| ~~~~^~~~~~~~~~~~~~~~~
xfmatpt.cxx:890:5: warning: âvoid free(void*)â called on pointer
â*matpt.FD_matpt::seq2â with nonzero offset 1 [-Wfree-nonheap-object]
890 | free(matpt->seq2 + 1);
| ~~~~^~~~~~~~~~~~~~~~~
align.cxx: In function âint command_line_align(int, char**)â:
align.cxx:1507:37: warning: â%dâ directive writing between 1 and 11 bytes
into a region of size 7 [-Wformat-overflow=]
1507 | sprintf(opt_name, "msa_opt_args_%d", view->alignment_algorithm + 1);
| ^~
align.cxx:1507:23: note: directive argument in the range [-2147483647,
2147483647]
1507 | sprintf(opt_name, "msa_opt_args_%d", view->alignment_algorithm + 1);
| ^~~~~~~~~~~~~~~~~
In function âint sprintf(char*, const char*, ...)â,
inlined from âint command_line_align(int, char**)â at align.cxx:1507:12:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note:
â__builtin___sprintf_chkâ output between 15 and 25 bytes into a destination
of size 20
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
xfmatpt.cxx: In function âvoid show_dot_plot(char*, char*, char*, char*, int,
int, int, void*)â:
xfmatpt.cxx:124:21: warning: âvoid free(void*)â called on pointer
â*matpt.FD_matpt::seq1â with nonzero offset 1 [-Wfree-nonheap-object]
124 | free(matpt->seq1+1);
| ~~~~^~~~~~~~~~~~~~~
xfmatpt.cxx:125:21: warning: âvoid free(void*)â called on pointer
â*matpt.FD_matpt::seq2â with nonzero offset 1 [-Wfree-nonheap-object]
125 | free(matpt->seq2+1);
| ~~~~^~~~~~~~~~~~~~~
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2
-Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2
-DFLTK1 -Dunix -Icsrc -I. -DNO_PDF
-DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\"
-fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF comlines.cxx
cc1plus: warning: â-Werror=â argument
â-Werror=implicit-function-declarationâ is not valid for C++
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2
-Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2
-DFLTK1 -Dunix -Icsrc -I. -DNO_PDF
-DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\"
-fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF resource.cxx
cc1plus: warning: â-Werror=â argument
â-Werror=implicit-function-declarationâ is not valid for C++
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2
-Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2
-DFLTK1 -Dunix -Icsrc -I. -DNO_PDF
-DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\"
-fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF nexus.cxx
cc1plus: warning: â-Werror=â argument
â-Werror=implicit-function-declarationâ is not valid for C++
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2
-Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2
-DFLTK1 -Dunix -Icsrc -I. -DNO_PDF
-DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\"
-fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF viewasprots.cxx
cc1plus: warning: â-Werror=â argument
â-Werror=implicit-function-declarationâ is not valid for C++
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2
-Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2
-DFLTK1 -Dunix -Icsrc -I. -DNO_PDF
-DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\"
-fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF racnuc_fetch.cxx
cc1plus: warning: â-Werror=â argument
â-Werror=implicit-function-declarationâ is not valid for C++
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2
-Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2
-DFLTK1 -Dunix -Icsrc -I. -DNO_PDF
-DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\"
-fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF concatenate.cxx
cc1plus: warning: â-Werror=â argument
â-Werror=implicit-function-declarationâ is not valid for C++
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2
-Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2
-DFLTK1 -Dunix -Icsrc -I. -DNO_PDF
-DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\"
-fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF statistics.cxx
cc1plus: warning: â-Werror=â argument
â-Werror=implicit-function-declarationâ is not valid for C++
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2
-Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2
-DFLTK1 -Dunix -Icsrc -I. -DNO_PDF
-DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\"
-fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF trees.cxx
cc1plus: warning: â-Werror=â argument
â-Werror=implicit-function-declarationâ is not valid for C++
trees.cxx: In function âvoid run_phyml_callback(Fl_Widget*, void*)â:
trees.cxx:1301:16: warning: ignoring return value of âsize_t fread(void*,
size_t, size_t, FILE*)â declared with attribute âwarn_unused_resultâ
[-Wunused-result]
1301 | fread(bootstrap_trees, l, 1, in);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
trees.cxx: In function âvoid command_line_phylogeny(int, char**)â:
trees.cxx:2794:12: warning: ignoring return value of âsize_t fread(void*,
size_t, size_t, FILE*)â declared with attribute âwarn_unused_resultâ
[-Wunused-result]
2794 | fread(utree, s, 1, in);
| ~~~~~^~~~~~~~~~~~~~~~~
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2
-Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2
-DFLTK1 -Dunix -Icsrc -I. -DNO_PDF
-DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\"
-fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF treedraw.cxx
cc1plus: warning: â-Werror=â argument
â-Werror=implicit-function-declarationâ is not valid for C++
trees.cxx: In function âchar* run_parsimony_method(SEA_VIEW*, int, const
char*, int, int, int, int, Fl_Box*, dnapars_S_option, const char**, float, int,
char**, void (*)(const char*, ...))â:
trees.cxx:2379:54: warning: â%dâ directive writing between 1 and 10 bytes
into a region of size 9 [-Wformat-overflow=]
2379 | sprintf(tmp, "Bootstrap replicate: %d", j + 1);
| ^~
In function âchar* parsimony_with_bootstrap(allseq*, char**, char**, int,
int, int, int*, int, int, Fl_Box*, int*, dnapars_S_option, int, float, int*,
char**)â,
inlined from âchar* run_parsimony_method(SEA_VIEW*, int, const char*,
int, int, int, int, Fl_Box*, dnapars_S_option, const char**, float, int,
char**, void (*)(const char*, ...))â at trees.cxx:2067:36:
trees.cxx:2379:32: note: directive argument in the range [1, 2147483647]
2379 | sprintf(tmp, "Bootstrap replicate: %d", j + 1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:970,
from seaview.h:3,
from trees.cxx:6:
In function âint sprintf(char*, const char*, ...)â,
inlined from âchar* parsimony_with_bootstrap(allseq*, char**, char**,
int, int, int, int*, int, int, Fl_Box*, int*, dnapars_S_option, int, float,
int*, char**)â at trees.cxx:2379:12,
inlined from âchar* run_parsimony_method(SEA_VIEW*, int, const char*,
int, int, int, int, Fl_Box*, dnapars_S_option, const char**, float, int,
char**, void (*)(const char*, ...))â at trees.cxx:2067:36:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note:
â__builtin___sprintf_chkâ output between 23 and 32 bytes into a destination
of size 30
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
trees.cxx: In function âchar* run_parsimony_method(SEA_VIEW*, int, const
char*, int, int, int, int, Fl_Box*, dnapars_S_option, const char**, float, int,
char**, void (*)(const char*, ...))â:
trees.cxx:2073:57: warning: â best trees, â directive writing 13 bytes into
a region of size between 12 and 21 [-Wformat-overflow=]
2073 | if (count_best > 1) sprintf(best, "consensus of %d best trees, ",
count_best);
| ^~~~~~~~~~~~~
In function âint sprintf(char*, const char*, ...)â,
inlined from âchar* run_parsimony_method(SEA_VIEW*, int, const char*,
int, int, int, int, Fl_Box*, dnapars_S_option, const char**, float, int,
char**, void (*)(const char*, ...))â at trees.cxx:2073:34:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note:
â__builtin___sprintf_chkâ output between 28 and 37 bytes into a destination
of size 35
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
trees.cxx: In function âvoid run_phyml_callback(Fl_Widget*, void*)â:
trees.cxx:1181:56: warning: â%sâ directive writing up to 4095 bytes into a
region of size 995 [-Wformat-overflow=]
1181 | sprintf(args + strlen(args), " -u \"%s\"", tmp);
| ^~ ~~~
In function âint sprintf(char*, const char*, ...)â,
inlined from âvoid run_phyml_callback(Fl_Widget*, void*)â at
trees.cxx:1181:13:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note:
â__builtin___sprintf_chkâ output between 7 and 4102 bytes into a
destination of size 1000
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2
-Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2
-DFLTK1 -Dunix -Icsrc -I. -DNO_PDF
-DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\"
-fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF addbootstrap.cxx
cc1plus: warning: â-Werror=â argument
â-Werror=implicit-function-declarationâ is not valid for C++
treedraw.cxx: In function âint count_node(noeud*, noeud*)â:
treedraw.cxx:3303:15: warning: argument 2 null where non-null expected
[-Wnonnull]
3303 | if (strcmp(centre->nom, target1) == 0 || strcmp(centre->nom,
target2) == 0 || strcmp(centre->nom, target3) == 0) {
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~
In file included from seaview.h:5,
from treedraw.h:4,
from treedraw.cxx:18:
/usr/include/string.h:156:12: note: in a call to function âint strcmp(const
char*, const char*)â declared ânonnullâ
156 | extern int strcmp (const char *__s1, const char *__s2)
| ^~~~~~
treedraw.cxx:3303:52: warning: argument 2 null where non-null expected
[-Wnonnull]
3303 | if (strcmp(centre->nom, target1) == 0 || strcmp(centre->nom,
target2) == 0 || strcmp(centre->nom, target3) == 0) {
|
~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/usr/include/string.h:156:12: note: in a call to function âint strcmp(const
char*, const char*)â declared ânonnullâ
156 | extern int strcmp (const char *__s1, const char *__s2)
| ^~~~~~
treedraw.cxx:3303:89: warning: argument 2 null where non-null expected
[-Wnonnull]
3303 | if (strcmp(centre->nom, target1) == 0 || strcmp(centre->nom,
target2) == 0 || strcmp(centre->nom, target3) == 0) {
|
~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/usr/include/string.h:156:12: note: in a call to function âint strcmp(const
char*, const char*)â declared ânonnullâ
156 | extern int strcmp (const char *__s1, const char *__s2)
| ^~~~~~
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2
-Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2
-DFLTK1 -Dunix -Icsrc -I. -DNO_PDF
-DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\"
-fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF least_squares_brl.cxx
cc1plus: warning: â-Werror=â argument
â-Werror=implicit-function-declarationâ is not valid for C++
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2
-Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2
-DFLTK1 -Dunix -Icsrc -I. -DNO_PDF
-DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\"
-fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF pseudoterminal.cxx
cc1plus: warning: â-Werror=â argument
â-Werror=implicit-function-declarationâ is not valid for C++
pseudoterminal.cxx: In function âint run_external_prog_in_pseudoterm(char*,
const char*, const char*)â:
pseudoterminal.cxx:342:24: warning: ignoring return value of âFILE*
freopen(const char*, const char*, FILE*)â declared with attribute
âwarn_unused_resultâ [-Wunused-result]
342 | freopen( (dialogfname ? dialogfname : slavename), "r",
stdin);
|
~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
pseudoterminal.cxx:343:24: warning: ignoring return value of âFILE*
freopen(const char*, const char*, FILE*)â declared with attribute
âwarn_unused_resultâ [-Wunused-result]
343 | freopen(slavename, "a", stderr);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2
-Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2
-DFLTK1 -Dunix -Icsrc -I. -DNO_PDF
-DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\"
-fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF unrooted.cxx
cc1plus: warning: â-Werror=â argument
â-Werror=implicit-function-declarationâ is not valid for C++
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2
-Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2
-DFLTK1 -Dunix -Icsrc -I. -DNO_PDF
-DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\"
-fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF pdf_or_ps.cxx
cc1plus: warning: â-Werror=â argument
â-Werror=implicit-function-declarationâ is not valid for C++
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2
-Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2
-DFLTK1 -Dunix -Icsrc -I. -DNO_PDF
-DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\"
-fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF svg.cxx
cc1plus: warning: â-Werror=â argument
â-Werror=implicit-function-declarationâ is not valid for C++
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2
-Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2
-DFLTK1 -Dunix -Icsrc -I. -DNO_PDF
-DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\"
-fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF threads.cxx
cc1plus: warning: â-Werror=â argument
â-Werror=implicit-function-declarationâ is not valid for C++
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2
-Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2
-DFLTK1 -Dunix -Icsrc -I. -DNO_PDF
-DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\"
-fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF tbe.cxx
cc1plus: warning: â-Werror=â argument
â-Werror=implicit-function-declarationâ is not valid for C++
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2
-Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2
-DFLTK1 -Dunix -Icsrc -I. -DNO_PDF
-DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\"
-fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF treerecs_draw.cxx
cc1plus: warning: â-Werror=â argument
â-Werror=implicit-function-declarationâ is not valid for C++
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2
-Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -DUSE_XFT -I/usr/include/freetype2
-DFLTK1 -Dunix -Icsrc -I. -DNO_PDF
-DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\"
-fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF FL/Fl_SVG_Image.cxx
cc1plus: warning: â-Werror=â argument
â-Werror=implicit-function-declarationâ is not valid for C++
gcc -c -O3 -g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection
-DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF
-DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\"
-fPIC -Dunix -Icsrc csrc/raa_acnuc.c
gcc -c -O3 -g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection
-DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF
-DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\"
-fPIC -Dunix -Icsrc csrc/parser.c
gcc -c -O3 -g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection
-DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF
-DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\"
-fPIC -Dunix -Icsrc csrc/md5.c
gcc -c -O3 -g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection
-DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF
-DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\"
-fPIC -Dunix -Icsrc csrc/zsockr.c
gcc -c -O3 -g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection
-DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF
-DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\"
-fPIC -Dunix -Icsrc csrc/misc_acnuc.c
gcc -c -O3 -g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection
-DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF
-DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\"
-fPIC -Dunix -Icsrc csrc/dnapars.c
gcc -c -O3 -g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection
-DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF
-DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\"
-fPIC -Dunix -Icsrc csrc/protpars.c
gcc -c -O3 -g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection
-DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF
-DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\"
-fPIC -Dunix -Icsrc csrc/seq.c
gcc -c -O3 -g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection
-DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF
-DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\"
-fPIC -Dunix -Icsrc csrc/phylip.c
gcc -c -O3 -g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection
-DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF
-DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\"
-fPIC -Dunix -Icsrc csrc/lwl.c
gcc -c -O3 -g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection
-DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF
-DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\"
-fPIC -Dunix -Icsrc csrc/bionj.c
gcc -c -O3 -g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection
-DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF
-DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\"
-fPIC -Dunix -Icsrc csrc/phyml_util.c
g++ -o seaview -Wl,-z,relro -Wl,-z,now seaview.o custom.o use_mase_files.o
regions.o load_seq.o align.o xfmatpt.o comlines.o resource.o nexus.o
viewasprots.o racnuc_fetch.o concatenate.o statistics.o trees.o treedraw.o
addbootstrap.o least_squares_brl.o pseudoterminal.o unrooted.o pdf_or_ps.o
svg.o threads.o tbe.o treerecs_draw.o Fl_SVG_Image.o raa_acnuc.o parser.o md5.o
zsockr.o misc_acnuc.o dnapars.o protpars.o seq.o phylip.o lwl.o bionj.o
phyml_util.o `fltk-config --use-images --ldflags` -ldl -lpthread -lz
-Wl,-z,muldefs
/usr/bin/ld: treerecs_draw.o: in function `SVG_View_data::update()':
././treerecs_draw.cxx:793:(.text+0xae): undefined reference to
`Fl_SVG_Image::resize(int, int)'
/usr/bin/ld: ././treerecs_draw.cxx:793:(.text+0x1eb): undefined reference to
`Fl_SVG_Image::resize(int, int)'
/usr/bin/ld: ././treerecs_draw.cxx:793:(.text+0x2be): undefined reference to
`Fl_SVG_Image::resize(int, int)'
/usr/bin/ld: treerecs_draw.o: in function `Fl_SVG_Box::Fl_SVG_Box(int, int,
int, int, char const*)':
././treerecs_draw.cxx:693:(.text+0x174c): undefined reference to
`Fl_SVG_Image::Fl_SVG_Image(char const*, char const*)'
/usr/bin/ld: ././treerecs_draw.cxx:717:(.text+0x17c1): undefined reference to
`Fl_SVG_Image::resize(int, int)'
/usr/bin/ld: ././treerecs_draw.cxx:713:(.text+0x1986): undefined reference to
`Fl_SVG_Image::resize(int, int)'
collect2: error: ld returned 1 exit status
make[1]: *** [Makefile:46: seaview] Error 1
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_build: error: make -j2 "INSTALL=install --strip-program=true" returned
exit code 2
make: *** [debian/rules:17: binary] Error 25
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--------------------------------------------------------------------------------
The above is just how the build ends and not necessarily the most relevant part.
If required, the full build log is available here:
https://people.debian.org/~sanvila/build-logs/202504/
About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.
If you could not reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.
If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:seaview, so that this is still
visible in the BTS web page for this package.
Thanks.
