Bug#1102784: marked as done (spglib: FTBFS: scikit_build_core._vendor.pyproject_metadata.errors.ConfigurationError: "project.license-files" must not be used when "project.license" is not a SPDX license expression)

Debian Bug Tracking System Sat, 12 Apr 2025 14:27:23 -0700

Your message dated Sat, 12 Apr 2025 21:24:44 +0000
with message-id <e1u3ile-00chdu...@fasolo.debian.org>
and subject line Bug#1102784: fixed in spglib 2.6.0-2
has caused the Debian Bug report #1102784,
regarding spglib: FTBFS: 
scikit_build_core._vendor.pyproject_metadata.errors.ConfigurationError: 
"project.license-files" must not be used when "project.license" is not a SPDX 
license expression
to be marked as done.


This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
1102784: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1102784
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems

--- Begin Message ---

Package: src:spglib
Version: 2.6.0-1
Severity: serious
Tags: ftbfs trixie sid

Dear maintainer:

During a rebuild of all packages in unstable, your package failed to build:

--------------------------------------------------------------------------------
[...]
 debian/rules clean
dh clean --buildsystem cmake --with python3
   dh_auto_clean -O--buildsystem=cmake
   debian/rules execute_after_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean --buildsystem pybuild
rm -rf .pytest_cache/ test/functional/python/__pycache__/
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_autoreconf_clean -O--buildsystem=cmake
   dh_clean -O--buildsystem=cmake
 debian/rules binary
dh binary --buildsystem cmake --with python3
   dh_update_autotools_config -O--buildsystem=cmake
   dh_autoreconf -O--buildsystem=cmake
   debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_configure -- -DSPGLIB_WITH_Fortran=ON
        cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PK 
[too-long-redacted] gnu -DSPGLIB_WITH_Fortran=ON ..
-- The C compiler identification is GNU 14.2.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Spglib:: Build type: None
-- Spglib:: Version 2.6.0
-- The Fortran compiler identification is GNU 14.2.0
-- Detecting Fortran compiler ABI info
-- Detecting Fortran compiler ABI info - done
-- Check for working Fortran compiler: /usr/bin/gfortran - skipped
-- The CXX compiler identification is GNU 14.2.0
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
-- Found Threads: TRUE
-- Configuring done (0.7s)
-- Generating done (0.0s)
CMake Warning:
  Manually-specified variables were not used by the project:

    CMAKE_EXPORT_NO_PACKAGE_REGISTRY
    CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY


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        cd obj-x86_64-linux-gnu && make -j2 "INSTALL=install 
--strip-program=true" VERBOSE=1
make[1]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
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cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/fortran && /usr/bin/cmake 
-DDynamicVersion_RUN:BOOL=True 
-DDynamicVersion_ARGS:STRING="PROJECT_SOURCE;/<<PKGBUILDDIR>>/fortran/..;GIT_ARCHIVAL_FILE;/<<PKGBUILDDIR>>/fortran/../.git_archival.txt;TMP_FOLDER;/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/fortran/tmp;VERSION_FULL_MODE;DEV;FALLBACK_VERSION;0.0.0"
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âvirtual void SymmetrySearch_test_spg_get_symmetry_Test::TestBody()â:
/<<PKGBUILDDIR>>/test/functional/c/test_symmetry_search.cpp:33:28: warning: 
âint spg_get_symmetry(int (*)[3][3], double (*)[3], int, const double (*)[3], 
const double (*)[3], const int*, int, double)â is deprecated: Use the 
variables from SpglibDataset (rotations, translations) 
[-Wdeprecated-declarations]
   33 |     size = spg_get_symmetry(rotation, translation, max_size, lattice, 
position,
      |            
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   34 |                             types, num_atom, 1e-5);
      |                             ~~~~~~~~~~~~~~~~~~~~~~
In file included from 
/<<PKGBUILDDIR>>/test/functional/c/test_symmetry_search.cpp:4:
/<<PKGBUILDDIR>>/include/spglib.h:248:13: note: declared here
  248 | SPG_API int spg_get_symmetry(int rotation[][3][3], double 
translation[][3],
      |             ^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/test/functional/c/test_symmetry_search.cpp: In member function 
âvirtual void SymmetrySearch_test_spg_get_multiplicity_Test::TestBody()â:
/<<PKGBUILDDIR>>/test/functional/c/test_symmetry_search.cpp:81:32: warning: 
âint spg_get_multiplicity(const double (*)[3], const double (*)[3], const 
int*, int, double)â is deprecated: Use the variables from SpglibDataset 
(n_operations) [-Wdeprecated-declarations]
   81 |     size = spg_get_multiplicity(lattice, position, types, num_atom, 
1e-5);
      |            
~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/spglib.h:354:13: note: declared here
  354 | SPG_API int spg_get_multiplicity(double const lattice[3][3],
      |             ^~~~~~~~~~~~~~~~~~~~
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/<<PKGBUILDDIR>>/test/functional/c/test_spacegroup_type_search.cpp: In member 
function âvirtual void 
SpacegroupTypeSearch_test_spg_get_international_Test::TestBody()â:
/<<PKGBUILDDIR>>/test/functional/c/test_spacegroup_type_search.cpp:20:30: 
warning: âint spg_get_international(char*, const double (*)[3], const double 
(*)[3], const int*, int, double)â is deprecated: Use the variables from 
SpglibDataset (spacegroup_number, international_symbol) 
[-Wdeprecated-declarations]
   20 |         spg_get_international(symbol, lattice, position, types, 
num_atom, 1e-5);
      |         
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from 
/<<PKGBUILDDIR>>/test/functional/c/test_spacegroup_type_search.cpp:4:
/<<PKGBUILDDIR>>/include/spglib.h:368:13: note: declared here
  368 | SPG_API int spg_get_international(char symbol[11], double const 
lattice[3][3],
      |             ^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/test/functional/c/test_spacegroup_type_search.cpp: In member 
function âvirtual void 
SpacegroupTypeSearch_test_spg_get_schoenflies_Test::TestBody()â:
/<<PKGBUILDDIR>>/test/functional/c/test_spacegroup_type_search.cpp:38:28: 
warning: âint spg_get_schoenflies(char*, const double (*)[3], const double 
(*)[3], const int*, int, double)â is deprecated: Use the variables from 
SpglibDataset (spacegroup_number, international_symbol) 
[-Wdeprecated-declarations]
   38 |         spg_get_schoenflies(symbol, lattice, position, types, num_atom, 
1e-5);
      |         
~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/spglib.h:384:13: note: declared here
  384 | SPG_API int spg_get_schoenflies(char symbol[7], double const 
lattice[3][3],
      |             ^~~~~~~~~~~~~~~~~~~
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/<<PKGBUILDDIR>>/test/functional/c/test_dataset_access.cpp: In member function 
âvirtual void 
DatasetAccess_test_spg_get_hall_number_from_symmetry_Test::TestBody()â:
/<<PKGBUILDDIR>>/test/functional/c/test_dataset_access.cpp:37:52: warning: 
âint spg_get_hall_number_from_symmetry(const int (*)[3][3], const double 
(*)[3], int, double)â is deprecated: Use the variable from 
SpglibSpacegroupType instead (hall_number) [-Wdeprecated-declarations]
   37 |     hall_number = spg_get_hall_number_from_symmetry(
      |                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
   38 |         dataset->rotations, dataset->translations, 
dataset->n_operations,
      |         
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |         symprec);
      |         ~~~~~~~~                                    
In file included from 
/<<PKGBUILDDIR>>/test/functional/c/test_dataset_access.cpp:4:
/<<PKGBUILDDIR>>/include/spglib.h:327:13: note: declared here
  327 | SPG_API int spg_get_hall_number_from_symmetry(int const 
rotation[][3][3],
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/test/functional/c/test_magnetic_symmetry.cpp: In member 
function âvirtual void 
MagneticSymmetry_test_spg_get_symmetry_with_tensors_rough_symprec_Test::TestBody()â:
/<<PKGBUILDDIR>>/test/functional/c/test_magnetic_symmetry.cpp:224:28: warning: 
âint spg_get_symmetry(int (*)[3][3], double (*)[3], int, const double (*)[3], 
const double (*)[3], const int*, int, double)â is deprecated: Use the 
variables from SpglibDataset (rotations, translations) 
[-Wdeprecated-declarations]
  224 |     size = spg_get_symmetry(rotations, translations, max_size, lattice,
      |            ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  225 |                             positions, types, num_atoms, symprec);
      |                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from 
/<<PKGBUILDDIR>>/test/functional/c/test_magnetic_symmetry.cpp:4:
/<<PKGBUILDDIR>>/include/spglib.h:248:13: note: declared here
  248 | SPG_API int spg_get_symmetry(int rotation[][3][3], double 
translation[][3],
      |             ^~~~~~~~~~~~~~~~
[ 96%] Building CXX object 
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[ 98%] Building CXX object 
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dh_auto_build --buildsystem pybuild -- --after-build 'rm -rf 
{build_dir}/spglib/lib'
I: pybuild plugin_pyproject:129: Building wheel for python3.13 with "build" 
module
I: pybuild base:311: python3.13 -m build --skip-dependency-check --no-isolation 
--wheel --outdir /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_spglib  
* Building wheel...
/usr/lib/python3/dist-packages/scikit_build_core/_vendor/pyproject_metadata/__init__.py:293:
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metadata >= 2.4
  self.validate()
  + Exception Group Traceback (most recent call last):
  |   File 
"/usr/lib/python3/dist-packages/pyproject_hooks/_in_process/_in_process.py", 
line 389, in <module>
  |     main()
  |     ~~~~^^
  |   File 
"/usr/lib/python3/dist-packages/pyproject_hooks/_in_process/_in_process.py", 
line 373, in main
  |     json_out["return_val"] = hook(**hook_input["kwargs"])
  |                              ~~~~^^^^^^^^^^^^^^^^^^^^^^^^
  |   File 
"/usr/lib/python3/dist-packages/pyproject_hooks/_in_process/_in_process.py", 
line 280, in build_wheel
  |     return _build_backend().build_wheel(
  |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
  |         wheel_directory, config_settings, metadata_directory
  |         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  |     )
  |     ^
  |   File 
"/usr/lib/python3/dist-packages/scikit_build_core/build/__init__.py", line 33, 
in build_wheel
  |     return _build_wheel_impl(
  |            ~~~~~~~~~~~~~~~~~^
  |         wheel_directory,
  |         ^^^^^^^^^^^^^^^^
  |     ...<2 lines>...
  |         editable=False,
  |         ^^^^^^^^^^^^^^^
  |     ).wheel_filename
  |     ^
  |   File "/usr/lib/python3/dist-packages/scikit_build_core/build/wheel.py", 
line 174, in _build_wheel_impl
  |     return _build_wheel_impl_impl(
  |         wheel_directory,
  |     ...<5 lines>...
  |         pyproject=pyproject,
  |     )
  |   File "/usr/lib/python3/dist-packages/scikit_build_core/build/wheel.py", 
line 231, in _build_wheel_impl_impl
  |     metadata = get_standard_metadata(pyproject, settings)
  |   File 
"/usr/lib/python3/dist-packages/scikit_build_core/build/metadata.py", line 75, 
in get_standard_metadata
  |     metadata = StandardMetadata.from_pyproject(
  |         new_pyproject_dict, all_errors=True, 
allow_extra_keys=allow_extra_keys
  |     )
  |   File 
"/usr/lib/python3/dist-packages/scikit_build_core/_vendor/pyproject_metadata/__init__.py",
 line 469, in from_pyproject
  |     pyproject.finalize("Failed to parse pyproject.toml")
  |     ~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  |   File 
"/usr/lib/python3/dist-packages/scikit_build_core/_vendor/pyproject_metadata/errors.py",
 line 108, in finalize
  |     raise ExceptionGroup(msg, self.errors)
  | ExceptionGroup: Failed to parse pyproject.toml (1 sub-exception)
  +-+---------------- 1 ----------------
    | scikit_build_core._vendor.pyproject_metadata.errors.ConfigurationError: 
"project.license-files" must not be used when "project.license" is not a SPDX 
license expression
    +------------------------------------

ERROR Backend subprocess exited when trying to invoke build_wheel
E: pybuild pybuild:389: build: plugin pyproject failed with: exit code=1: 
python3.13 -m build --skip-dependency-check --no-isolation --wheel --outdir 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_spglib  
dh_auto_build: error: pybuild --build -i python{version} -p 3.13 --after-build 
"rm -rf {build_dir}/spglib/lib" returned exit code 13
make[1]: *** [debian/rules:16: execute_after_dh_auto_build] Error 25
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:10: binary] Error 2
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--------------------------------------------------------------------------------

The above is just how the build ends and not necessarily the most relevant part.
If required, the full build log is available here:

https://people.debian.org/~sanvila/build-logs/202504/

About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.

If you could not reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.

If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:spglib, so that this is still
visible in the BTS web page for this package.

Thanks.

--- End Message ---

--- Begin Message ---

Source: spglib
Source-Version: 2.6.0-2
Done: Sergio Durigan Junior <sergi...@debian.org>

We believe that the bug you reported is fixed in the latest version of
spglib, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 1102...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Sergio Durigan Junior <sergi...@debian.org> (supplier of updated spglib package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 1.8
Date: Sat, 12 Apr 2025 16:46:09 -0400
Source: spglib
Architecture: source
Version: 2.6.0-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 
<debian-science-maintain...@lists.alioth.debian.org>
Changed-By: Sergio Durigan Junior <sergi...@debian.org>
Closes: 1102784
Changes:
 spglib (2.6.0-2) unstable; urgency=medium
 .
   * Team upload.
   * d/p/pyproject.toml.patch: Remove license hunk. (Closes: #1102784)
Checksums-Sha1:
 9374834c09e28dc558b41269f4c585ef69ea91ad 2541 spglib_2.6.0-2.dsc
 fe674464e0a9ad017e0c043a1dd922598506d87d 6824 spglib_2.6.0-2.debian.tar.xz
 f89cc572822ffe51ec7d1b3e7f6359f967ab70d0 10573 spglib_2.6.0-2_amd64.buildinfo
Checksums-Sha256:
 8d0bb2441ea47c166880f36679168991205d9000532c9d93ac472ead51ab130e 2541 
spglib_2.6.0-2.dsc
 94a33aed5c4992e289ceaebed758c94fcc0b6f18a66e3f7c56242290710a30e4 6824 
spglib_2.6.0-2.debian.tar.xz
 926e27c197254111fb883b0e6938b8a4d24168c29e8d7f21bef907adcb0cafc6 10573 
spglib_2.6.0-2_amd64.buildinfo
Files:
 30b99b523b56c6e46b9dda23f56f731b 2541 science optional spglib_2.6.0-2.dsc
 d69b95be4f1685b7f9a552e6e16e0c5c 6824 science optional 
spglib_2.6.0-2.debian.tar.xz
 a546587df54db70376df23c3b8c1dd92 10573 science optional 
spglib_2.6.0-2_amd64.buildinfo

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--- End Message ---

Bug#1102784: marked as done (spglib: FTBFS: scikit_build_core._vendor.pyproject_metadata.errors.ConfigurationError: "project.license-files" must not be used when "project.license" is not a SPDX license expression)

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