Bug#1039642: marked as done (r-cran-arsenal: autopkgtest failure with r-base (4.3.1-1))

[Debian Bug Tracking System]

Your message dated Wed, 19 Jul 2023 13:53:33 +0000
with message-id <e1qm7ct-006kwb...@fasolo.debian.org>
and subject line Bug#1039642: fixed in r-cran-arsenal 3.6.3-2
has caused the Debian Bug report #1039642,
regarding r-cran-arsenal: autopkgtest failure with r-base (4.3.1-1)
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
1039642: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1039642
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems

--- Begin Message ---

Source: r-cran-arsenal
Version: 3.6.3-1
Severity: serious
Justification: autopkgtest failure

Dear Maintainer,

The autopkgtest of your package fails with r-base (4.3.1-1):

 48s [ FAIL 6 | WARN 0 | SKIP 12 | PASS 471 ]
 48s 
 48s ══ Skipped tests 
═══════════════════════════════════════════════════════════════
 48s • On CRAN (12)
 48s 
 48s ══ Failed tests 
════════════════════════════════════════════════════════════════
 48s ── Failure ('test_modelsum.R:125'): offset() works 
─────────────────────────────
 48s `summary(...)` threw an error.
 48s Message: DLL requires the use of native symbols
 48s Class:   simpleError/error/condition
 48s Backtrace:
 48s      ▆
 48s   1. ├─testthat::expect_error(...) at test_modelsum.R:125:2
 48s   2. │ └─testthat:::quasi_capture(...)
 48s   3. │   ├─testthat (local) .capture(...)
 48s   4. │   │ └─base::withCallingHandlers(...)
 48s   5. │   └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
 48s   6. ├─base::summary(...)
 48s   7. └─arsenal::modelsum(...)
 48s   8.   └─arsenal:::modelsum_guts(...)
 48s   9.     ├─base::`[<-`(`*tmp*`, coeffRRTidy$term == "Intercept", -1, value 
= `<lgl>`)
 48s  10.     └─tibble:::`[<-.tbl_df`(...)
 48s  11.       └─tibble:::tbl_subassign(x, i, j, value, i_arg, j_arg, 
substitute(value))
 48s  12.         └─tibble:::tbl_subassign_row(xj, i, value, i_arg, value_arg)
 48s  13.           ├─base::withCallingHandlers(...)
 48s  14.           └─tibble:::vectbl_assign(x[[j]], i, recycled_value[[j]])
 48s ── Error ('test_modelsum.R:240'): ordinal works 
────────────────────────────────
 48s Error in `vectbl_assign(x[[j]], i, recycled_value[[j]])`: DLL requires the 
use of native symbols
 48s Backtrace:
 48s      ▆
 48s   1. ├─testthat::expect_identical(...) at test_modelsum.R:240:4
 48s   2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
 48s   3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
 48s   4. ├─arsenal:::capture.kable(...)
 48s   5. │ └─utils::capture.output(x) at tests/testthat/helper-script.R:4:2
 48s   6. │   └─base::withVisible(...elt(i))
 48s   7. ├─base::summary(...)
 48s   8. └─arsenal::modelsum(...)
 48s   9.   └─arsenal:::modelsum_guts(...)
 48s  10.     ├─base::`[<-`(...)
 48s  11.     └─tibble:::`[<-.tbl_df`(...)
 48s  12.       └─tibble:::tbl_subassign(x, i, j, value, i_arg, j_arg, 
substitute(value))
 48s  13.         └─tibble:::tbl_subassign_row(xj, i, value, i_arg, value_arg)
 48s  14.           ├─base::withCallingHandlers(...)
 48s  15.           └─tibble:::vectbl_assign(x[[j]], i, recycled_value[[j]])
 48s ── Error ('test_modelsum.R:286'): negbin works 
─────────────────────────────────
 48s Error in `vectbl_assign(x[[j]], i, recycled_value[[j]])`: DLL requires the 
use of native symbols
 48s Backtrace:
 48s      ▆
 48s   1. ├─testthat::expect_identical(...) at test_modelsum.R:286:4
 48s   2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
 48s   3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
 48s   4. ├─arsenal:::capture.kable(...)
 48s   5. │ └─utils::capture.output(x) at tests/testthat/helper-script.R:4:2
 48s   6. │   └─base::withVisible(...elt(i))
 48s   7. ├─base::summary(...)
 48s   8. └─arsenal::modelsum(...)
 48s   9.   └─arsenal:::modelsum_guts(...)
 48s  10.     ├─base::`[<-`(`*tmp*`, coeffRRTidy$term == "Intercept", -1, value 
= `<lgl>`)
 48s  11.     └─tibble:::`[<-.tbl_df`(...)
 48s  12.       └─tibble:::tbl_subassign(x, i, j, value, i_arg, j_arg, 
substitute(value))
 48s  13.         └─tibble:::tbl_subassign_row(xj, i, value, i_arg, value_arg)
 48s  14.           ├─base::withCallingHandlers(...)
 48s  15.           └─tibble:::vectbl_assign(x[[j]], i, recycled_value[[j]])
 48s ── Error ('test_modelsum.R:386'): 08/01/2017: Beth Atkinson's subset 
problem ───
 48s Error in `vectbl_assign(x[[j]], i, recycled_value[[j]])`: DLL requires the 
use of native symbols
 48s Backtrace:
 48s      ▆
 48s   1. ├─testthat::expect_identical(...) at test_modelsum.R:386:2
 48s   2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
 48s   3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
 48s   4. ├─arsenal:::capture.kable(...)
 48s   5. │ └─utils::capture.output(x) at tests/testthat/helper-script.R:4:2
 48s   6. │   └─base::withVisible(...elt(i))
 48s   7. ├─base::summary(...)
 48s   8. └─arsenal::modelsum(...)
 48s   9.   └─arsenal:::modelsum_guts(...)
 48s  10.     ├─base::`[<-`(`*tmp*`, coeffORTidy$term == "Intercept", -1, value 
= `<lgl>`)
 48s  11.     └─tibble:::`[<-.tbl_df`(...)
 48s  12.       └─tibble:::tbl_subassign(x, i, j, value, i_arg, j_arg, 
substitute(value))
 48s  13.         └─tibble:::tbl_subassign_row(xj, i, value, i_arg, value_arg)
 48s  14.           ├─base::withCallingHandlers(...)
 48s  15.           └─tibble:::vectbl_assign(x[[j]], i, recycled_value[[j]])
 48s ── Error ('test_modelsum.R:680'): relrisk works (#279) 
─────────────────────────
 48s Error in `vectbl_assign(x[[j]], i, recycled_value[[j]])`: DLL requires the 
use of native symbols
 48s Backtrace:
 48s      ▆
 48s   1. ├─testthat::expect_identical(...) at test_modelsum.R:680:2
 48s   2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
 48s   3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
 48s   4. ├─arsenal:::capture.kable(...)
 48s   5. │ └─utils::capture.output(x) at tests/testthat/helper-script.R:4:2
 48s   6. │   └─base::withVisible(...elt(i))
 48s   7. ├─base::summary(...)
 48s   8. └─arsenal::modelsum(...)
 48s   9.   └─arsenal:::modelsum_guts(...)
 48s  10.     ├─base::`[<-`(`*tmp*`, coeffRRTidy$term == "Intercept", -1, value 
= `<lgl>`)
 48s  11.     └─tibble:::`[<-.tbl_df`(...)
 48s  12.       └─tibble:::tbl_subassign(x, i, j, value, i_arg, j_arg, 
substitute(value))
 48s  13.         └─tibble:::tbl_subassign_row(xj, i, value, i_arg, value_arg)
 48s  14.           ├─base::withCallingHandlers(...)
 48s  15.           └─tibble:::vectbl_assign(x[[j]], i, recycled_value[[j]])
 48s ── Error ('test_modelsum.R:695'): Nevents works for binomial (#325) 
────────────
 48s Error in `vectbl_assign(x[[j]], i, recycled_value[[j]])`: DLL requires the 
use of native symbols
 48s Backtrace:
 48s      ▆
 48s   1. ├─testthat::expect_identical(...) at test_modelsum.R:695:2
 48s   2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
 48s   3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
 48s   4. ├─arsenal:::capture.kable(...)
 48s   5. │ └─utils::capture.output(x) at tests/testthat/helper-script.R:4:2
 48s   6. │   └─base::withVisible(...elt(i))
 48s   7. ├─base::summary(...)
 48s   8. └─arsenal::modelsum(...)
 48s   9.   └─arsenal:::modelsum_guts(...)
 48s  10.     ├─base::`[<-`(`*tmp*`, coeffORTidy$term == "Intercept", -1, value 
= `<lgl>`)
 48s  11.     └─tibble:::`[<-.tbl_df`(...)
 48s  12.       └─tibble:::tbl_subassign(x, i, j, value, i_arg, j_arg, 
substitute(value))
 48s  13.         └─tibble:::tbl_subassign_row(xj, i, value, i_arg, value_arg)
 48s  14.           ├─base::withCallingHandlers(...)
 48s  15.           └─tibble:::vectbl_assign(x[[j]], i, recycled_value[[j]])
 48s 
 48s [ FAIL 6 | WARN 0 | SKIP 12 | PASS 471 ]

https://ci.debian.net/data/autopkgtest/testing/amd64/r/r-cran-arsenal/34918505/log.gz

--- End Message ---

--- Begin Message ---

Source: r-cran-arsenal
Source-Version: 3.6.3-2
Done: Andreas Tille <ti...@debian.org>

We believe that the bug you reported is fixed in the latest version of
r-cran-arsenal, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 1039...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Andreas Tille <ti...@debian.org> (supplier of updated r-cran-arsenal package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 1.8
Date: Wed, 19 Jul 2023 15:27:48 +0200
Source: r-cran-arsenal
Architecture: source
Version: 3.6.3-2
Distribution: unstable
Urgency: medium
Maintainer: Debian R Packages Maintainers <r-pkg-t...@alioth-lists.debian.net>
Changed-By: Andreas Tille <ti...@debian.org>
Closes: 1039642
Changes:
 r-cran-arsenal (3.6.3-2) unstable; urgency=medium
 .
   * Disable reprotest
   * Rebuild against latest r-base
     Closes: #1039642
   * Standards-Version: 4.6.2 (routine-update)
   * Lintian-overrides (see lintian bug #1017966)
Checksums-Sha1:
 309b4efddf01ebbfb8a50677bc7e624fb8a805fe 2294 r-cran-arsenal_3.6.3-2.dsc
 8b8a66ba221e5b5b3fe76338c141360dd1bc517f 3484 
r-cran-arsenal_3.6.3-2.debian.tar.xz
 3bce45fa86b0c2005e9b68c6f9a3a5897bd244a3 10893 
r-cran-arsenal_3.6.3-2_amd64.buildinfo
Checksums-Sha256:
 0a301cf0cef62f1b60b17ee18aef57a5c80c6d46bda85717c48162ca77786e01 2294 
r-cran-arsenal_3.6.3-2.dsc
 459bfe03de623604623e62c813a8927ed3f5eea39ba38ff36d12640b95404e66 3484 
r-cran-arsenal_3.6.3-2.debian.tar.xz
 bdd8d5c672e9e12fb38bfce760b4e10bd46e8a9f8b6eb3799eacd53f686cac7a 10893 
r-cran-arsenal_3.6.3-2_amd64.buildinfo
Files:
 62d53a728d4662fd24b776f5f706d519 2294 gnu-r optional r-cran-arsenal_3.6.3-2.dsc
 0e09132243a737c44c9a4f68de359c31 3484 gnu-r optional 
r-cran-arsenal_3.6.3-2.debian.tar.xz
 450e7b7f75b2c2bf7cdb01c6c6125a57 10893 gnu-r optional 
r-cran-arsenal_3.6.3-2_amd64.buildinfo

-----BEGIN PGP SIGNATURE-----
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=25Up
-----END PGP SIGNATURE-----

--- End Message ---