Source: r-cran-arsenal
Version: 3.6.3-1
Severity: serious
Justification: autopkgtest failure
Dear Maintainer,
The autopkgtest of your package fails with r-base (4.3.1-1):
48s [ FAIL 6 | WARN 0 | SKIP 12 | PASS 471 ]
48s
48s ══ Skipped tests
═══════════════════════════════════════════════════════════════
48s • On CRAN (12)
48s
48s ══ Failed tests
════════════════════════════════════════════════════════════════
48s ── Failure ('test_modelsum.R:125'): offset() works
─────────────────────────────
48s `summary(...)` threw an error.
48s Message: DLL requires the use of native symbols
48s Class: simpleError/error/condition
48s Backtrace:
48s ▆
48s 1. ├─testthat::expect_error(...) at test_modelsum.R:125:2
48s 2. │ └─testthat:::quasi_capture(...)
48s 3. │ ├─testthat (local) .capture(...)
48s 4. │ │ └─base::withCallingHandlers(...)
48s 5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
48s 6. ├─base::summary(...)
48s 7. └─arsenal::modelsum(...)
48s 8. └─arsenal:::modelsum_guts(...)
48s 9. ├─base::`[<-`(`*tmp*`, coeffRRTidy$term == "Intercept", -1, value
= `<lgl>`)
48s 10. └─tibble:::`[<-.tbl_df`(...)
48s 11. └─tibble:::tbl_subassign(x, i, j, value, i_arg, j_arg,
substitute(value))
48s 12. └─tibble:::tbl_subassign_row(xj, i, value, i_arg, value_arg)
48s 13. ├─base::withCallingHandlers(...)
48s 14. └─tibble:::vectbl_assign(x[[j]], i, recycled_value[[j]])
48s ── Error ('test_modelsum.R:240'): ordinal works
────────────────────────────────
48s Error in `vectbl_assign(x[[j]], i, recycled_value[[j]])`: DLL requires the
use of native symbols
48s Backtrace:
48s ▆
48s 1. ├─testthat::expect_identical(...) at test_modelsum.R:240:4
48s 2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
48s 3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
48s 4. ├─arsenal:::capture.kable(...)
48s 5. │ └─utils::capture.output(x) at tests/testthat/helper-script.R:4:2
48s 6. │ └─base::withVisible(...elt(i))
48s 7. ├─base::summary(...)
48s 8. └─arsenal::modelsum(...)
48s 9. └─arsenal:::modelsum_guts(...)
48s 10. ├─base::`[<-`(...)
48s 11. └─tibble:::`[<-.tbl_df`(...)
48s 12. └─tibble:::tbl_subassign(x, i, j, value, i_arg, j_arg,
substitute(value))
48s 13. └─tibble:::tbl_subassign_row(xj, i, value, i_arg, value_arg)
48s 14. ├─base::withCallingHandlers(...)
48s 15. └─tibble:::vectbl_assign(x[[j]], i, recycled_value[[j]])
48s ── Error ('test_modelsum.R:286'): negbin works
─────────────────────────────────
48s Error in `vectbl_assign(x[[j]], i, recycled_value[[j]])`: DLL requires the
use of native symbols
48s Backtrace:
48s ▆
48s 1. ├─testthat::expect_identical(...) at test_modelsum.R:286:4
48s 2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
48s 3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
48s 4. ├─arsenal:::capture.kable(...)
48s 5. │ └─utils::capture.output(x) at tests/testthat/helper-script.R:4:2
48s 6. │ └─base::withVisible(...elt(i))
48s 7. ├─base::summary(...)
48s 8. └─arsenal::modelsum(...)
48s 9. └─arsenal:::modelsum_guts(...)
48s 10. ├─base::`[<-`(`*tmp*`, coeffRRTidy$term == "Intercept", -1, value
= `<lgl>`)
48s 11. └─tibble:::`[<-.tbl_df`(...)
48s 12. └─tibble:::tbl_subassign(x, i, j, value, i_arg, j_arg,
substitute(value))
48s 13. └─tibble:::tbl_subassign_row(xj, i, value, i_arg, value_arg)
48s 14. ├─base::withCallingHandlers(...)
48s 15. └─tibble:::vectbl_assign(x[[j]], i, recycled_value[[j]])
48s ── Error ('test_modelsum.R:386'): 08/01/2017: Beth Atkinson's subset
problem ───
48s Error in `vectbl_assign(x[[j]], i, recycled_value[[j]])`: DLL requires the
use of native symbols
48s Backtrace:
48s ▆
48s 1. ├─testthat::expect_identical(...) at test_modelsum.R:386:2
48s 2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
48s 3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
48s 4. ├─arsenal:::capture.kable(...)
48s 5. │ └─utils::capture.output(x) at tests/testthat/helper-script.R:4:2
48s 6. │ └─base::withVisible(...elt(i))
48s 7. ├─base::summary(...)
48s 8. └─arsenal::modelsum(...)
48s 9. └─arsenal:::modelsum_guts(...)
48s 10. ├─base::`[<-`(`*tmp*`, coeffORTidy$term == "Intercept", -1, value
= `<lgl>`)
48s 11. └─tibble:::`[<-.tbl_df`(...)
48s 12. └─tibble:::tbl_subassign(x, i, j, value, i_arg, j_arg,
substitute(value))
48s 13. └─tibble:::tbl_subassign_row(xj, i, value, i_arg, value_arg)
48s 14. ├─base::withCallingHandlers(...)
48s 15. └─tibble:::vectbl_assign(x[[j]], i, recycled_value[[j]])
48s ── Error ('test_modelsum.R:680'): relrisk works (#279)
─────────────────────────
48s Error in `vectbl_assign(x[[j]], i, recycled_value[[j]])`: DLL requires the
use of native symbols
48s Backtrace:
48s ▆
48s 1. ├─testthat::expect_identical(...) at test_modelsum.R:680:2
48s 2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
48s 3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
48s 4. ├─arsenal:::capture.kable(...)
48s 5. │ └─utils::capture.output(x) at tests/testthat/helper-script.R:4:2
48s 6. │ └─base::withVisible(...elt(i))
48s 7. ├─base::summary(...)
48s 8. └─arsenal::modelsum(...)
48s 9. └─arsenal:::modelsum_guts(...)
48s 10. ├─base::`[<-`(`*tmp*`, coeffRRTidy$term == "Intercept", -1, value
= `<lgl>`)
48s 11. └─tibble:::`[<-.tbl_df`(...)
48s 12. └─tibble:::tbl_subassign(x, i, j, value, i_arg, j_arg,
substitute(value))
48s 13. └─tibble:::tbl_subassign_row(xj, i, value, i_arg, value_arg)
48s 14. ├─base::withCallingHandlers(...)
48s 15. └─tibble:::vectbl_assign(x[[j]], i, recycled_value[[j]])
48s ── Error ('test_modelsum.R:695'): Nevents works for binomial (#325)
────────────
48s Error in `vectbl_assign(x[[j]], i, recycled_value[[j]])`: DLL requires the
use of native symbols
48s Backtrace:
48s ▆
48s 1. ├─testthat::expect_identical(...) at test_modelsum.R:695:2
48s 2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
48s 3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
48s 4. ├─arsenal:::capture.kable(...)
48s 5. │ └─utils::capture.output(x) at tests/testthat/helper-script.R:4:2
48s 6. │ └─base::withVisible(...elt(i))
48s 7. ├─base::summary(...)
48s 8. └─arsenal::modelsum(...)
48s 9. └─arsenal:::modelsum_guts(...)
48s 10. ├─base::`[<-`(`*tmp*`, coeffORTidy$term == "Intercept", -1, value
= `<lgl>`)
48s 11. └─tibble:::`[<-.tbl_df`(...)
48s 12. └─tibble:::tbl_subassign(x, i, j, value, i_arg, j_arg,
substitute(value))
48s 13. └─tibble:::tbl_subassign_row(xj, i, value, i_arg, value_arg)
48s 14. ├─base::withCallingHandlers(...)
48s 15. └─tibble:::vectbl_assign(x[[j]], i, recycled_value[[j]])
48s
48s [ FAIL 6 | WARN 0 | SKIP 12 | PASS 471 ]
https://ci.debian.net/data/autopkgtest/testing/amd64/r/r-cran-arsenal/34918505/log.gz
