Bug#1022254: marked as done (sagemath autopkgtest regressed)

[Debian Bug Tracking System]

Your message dated Tue, 07 Feb 2023 08:40:24 +0000
with message-id <e1ppjwa-0041hj...@fasolo.debian.org>
and subject line Bug#1022254: fixed in sagemath 9.5-5
has caused the Debian Bug report #1022254,
regarding sagemath autopkgtest regressed
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

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-- 
1022254: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1022254
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems

--- Begin Message ---

Source: eclib, sagemath
Control: found -1 eclib/20221012-1
Control: found -1 sagemath/9.5-4
Severity: serious
Tags: sid bookworm
User: debian...@lists.debian.org
Usertags: breaks needs-update

Dear maintainer(s),



                       pass            fail
eclib                  from testing    20221012-1
sagemath               from testing    9.5-4
versioned deps [0]     from testing    from unstable
all others             from testing    from testing

I copied some of the output at the bottom of this report.



More information about this bug and the reason for filing it can be found on
https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation

Paul


[1] https://qa.debian.org/excuses.php?package=eclib

https://ci.debian.net/data/autopkgtest/testing/i386/s/sagemath/27387916/log.gz

**********************************************************************

Failed example:
    print(out)
Expected:
    499500
Got:
    <BLANKLINE>
**********************************************************************

Failed example:
    ret
Expected:
    0
Got:
    1
**********************************************************************

Failed example:
    print(out)
Expected:
    499500
Got:
    <BLANKLINE>
**********************************************************************

Failed example:
    ret
Expected:
    0
Got:
    1
**********************************************************************

Failed example:
    out.find("5559060566555523") >= 0
Expected:
    True
Got:
    False
**********************************************************************

Failed example:
    err
Expected:
    ''
Got:
    '/usr/bin/sage: line 629: exec: ipython3: not found\n'
**********************************************************************

Failed example:
    ret
Expected:
    0
Got:
    127
**********************************************************************

Failed example:
    print(err)
Expected:
    Cython (http://cython.org) is a compiler for code written in the
    Cython language.  Cython is based on Pyrex by Greg Ewing.
    ...
Got:
    /usr/bin/sage: line 643: exec: cython: not found
    <BLANKLINE>
**********************************************************************

Failed example:
    out.find("Maxima ") >= 0
Expected:
    True
Got:
    False
**********************************************************************

Failed example:
    err
Expected:
    ''
Got:
    '/usr/bin/sage: line 697: exec: maxima: not found\n'
**********************************************************************

Failed example:
    ret
Expected:
    0
Got:
    127
**********************************************************************
1 item had failures:
  11 of 207 in sage.tests.cmdline.test_executable
    [206 tests, 11 failures, 53.64 s]

    [100 tests, 35.58 s]

    [5 tests, 4.89 s]

    [0 tests, 0.00 s]

    [6 tests, 0.01 s]

    [11 tests, 1.97 s]

    [5 tests, 0.01 s]

    [23 tests, 0.04 s]

    [54 tests, 0.15 s]

    [5 tests, 0.18 s]

    [0 tests, 0.00 s]

    [0 tests, 0.00 s]

    [165 tests, 2.28 s]

    [257 tests, 2.83 s]

    [166 tests, 1.39 s]

    [110 tests, 0.38 s]

    [6 tests, 0.27 s]

    [135 tests, 6.49 s]

    [49 tests, 0.19 s]

    [221 tests, 0.82 s]

    [855 tests, 6.54 s]

    [6 tests, 0.32 s]

    [639 tests, 18.55 s]

    [97 tests, 1.44 s]

    [308 tests, 1.75 s]

    [0 tests, 0.00 s]

    [0 tests, 0.00 s]

    [476 tests, 6.39 s]

    [108 tests, 3.66 s]

    [28 tests, 8.36 s]

    [28 tests, 0.04 s]

    [58 tests, 7.00 s]

    [27 tests, 0.01 s]

    [0 tests, 0.00 s]

    [18 tests, 5.80 s]
----------------------------------------------------------------------

----------------------------------------------------------------------
Total time for all tests: 6992.0 seconds
    cpu time: 10979.8 seconds
    cumulative wall time: 13561.8 seconds

Pytest is not installed, skip checking tests that rely on it.
Error: 363 tests failed, up to 100 failures are tolerated
make: *** [debian/tests.mk:56: had-few-failures] Error 1
autopkgtest [22:15:44]: test command1

With a recent upload of eclib the autopkgtest of sagemath fails in testing when that autopkgtest is run with the binary packages of eclib from unstable. It passes when run with only packages from testing. In tabular form: Currently this regression is blocking the migration of eclib to testing [1]. Due to the nature of this issue, I filed this bug report against both packages. Can you please investigate the situation and reassign the bug to the right package? [0] You can see what packages were added from the second line of the log file quoted below. The migration software adds source package from unstable to the list if they are needed to install packages from eclib/20221012-1. I.e. due to versioned dependencies or breaks/conflicts. File "sage/src/sage/tests/cmdline.py", line 292, in sage.tests.cmdline.test_executable File "sage/src/sage/tests/cmdline.py", line 297, in sage.tests.cmdline.test_executable File "sage/src/sage/tests/cmdline.py", line 300, in sage.tests.cmdline.test_executable File "sage/src/sage/tests/cmdline.py", line 304, in sage.tests.cmdline.test_executable File "sage/src/sage/tests/cmdline.py", line 467, in sage.tests.cmdline.test_executable File "sage/src/sage/tests/cmdline.py", line 469, in sage.tests.cmdline.test_executable File "sage/src/sage/tests/cmdline.py", line 471, in sage.tests.cmdline.test_executable File "sage/src/sage/tests/cmdline.py", line 491, in sage.tests.cmdline.test_executable File "sage/src/sage/tests/cmdline.py", line 570, in sage.tests.cmdline.test_executable File "sage/src/sage/tests/cmdline.py", line 572, in sage.tests.cmdline.test_executable File "sage/src/sage/tests/cmdline.py", line 574, in sage.tests.cmdline.test_executable sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/tests/gosper-sum.py sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/tests/lazy_imports.py sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/tests/modular_group_cohomology.py sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/tests/numpy.py sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/tests/parigp.py sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/tests/startup.py sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/tests/stl_vector.pyx sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/tests/symbolic-series.py sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/tests/sympy.py sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/topology/__init__.py sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/topology/all.py sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/topology/cell_complex.py sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/topology/cubical_complex.py sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/topology/delta_complex.py sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/topology/filtered_simplicial_complex.py sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/topology/simplicial_complex_catalog.py sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/topology/simplicial_complex_examples.py sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/topology/simplicial_complex_homset.py sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/topology/simplicial_complex_morphism.py sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/topology/simplicial_set.py sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/topology/simplicial_set_catalog.py sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/topology/simplicial_complex.py sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/topology/simplicial_set_examples.py sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/topology/simplicial_set_morphism.py sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/typeset/__init__.py sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/typeset/all.py sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/topology/simplicial_set_constructions.py sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/typeset/character_art.py sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/typeset/ascii_art.py sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/typeset/symbols.py sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/typeset/character_art_factory.py sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/typeset/unicode_characters.py sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/version.py sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/typeset/unicode_art.py sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/arith/long.pxd # 14 doctests failed sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/calculus/calculus.py # 1 doctest failed sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/combinat/cluster_algebra_quiver/interact.py # 1 doctest failed sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/combinat/cluster_algebra_quiver/cluster_seed.py # 1 doctest failed sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/combinat/cluster_algebra_quiver/quiver.py # 1 doctest failed sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/cpython/cython_metaclass.pyx # 4 doctests failed sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/cpython/string.pyx # 1 doctest failed sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/cpython/getattr.pyx # 4 doctests failed sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/cpython/wrapperdescr.pxd # 6 doctests failed sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/docs/instancedoc.pyx # 4 doctests failed sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/dynamics/complex_dynamics/mandel_julia.py # 3 doctests failed sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/env.py # 1 doctest failed sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/ext/memory_allocator.pxd # 6 doctests failed sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/ext/memory_allocator.pyx # 9 doctests failed sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/features/__init__.py # 2 doctests failed sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/features/pkg_systems.py # 1 doctest failed sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/functions/min_max.py # 2 doctests failed sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/graphs/connectivity.pyx # 2 doctests failed sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/graphs/generators/families.py # 1 doctest failed sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/graphs/graph_decompositions/fast_digraph.pyx # 5 doctests failed sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/groups/perm_gps/permgroup.py # 3 doctests failed sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/interacts/test_jupyter.rst # 19 doctests failed sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/interfaces/gap.py # 1 doctest failed sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/interfaces/ecm.py # 2 doctests failed sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/interfaces/octave.py # 1 doctest failed sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/interfaces/singular.py # 5 doctests failed sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/interfaces/tests.py # 1 doctest failed sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/lfunctions/dokchitser.py # 4 doctests failed sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/libs/eclib/mwrank.pyx # 1 doctest failed sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/libs/eclib/interface.py # 7 doctests failed sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/libs/pari/tests.py # 1 doctest failed sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/libs/singular/function.pyx # 1 doctest failed sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/libs/singular/singular.pyx # 1 doctest failed sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/manifolds/continuous_map.py # 1 doctest failed sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/manifolds/differentiable/diff_form.py # 2 doctests failed sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/misc/cachefunc.pyx # 54 doctests failed sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/misc/compat.py # 1 doctest failed sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/misc/cython.py # 18 doctests failed sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/misc/html.py # 3 doctests failed sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/misc/inherit_comparison.pyx # 5 doctests failed sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/misc/lazy_attribute.pyx # 3 doctests failed sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/misc/lazy_import.pyx # 1 doctest failed sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/misc/nested_class.pyx # 6 doctests failed sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/misc/sagedoc.py # 2 doctests failed sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/misc/session.pyx # 2 doctests failed sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/misc/sageinspect.py # 35 doctests failed sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/misc/superseded.py # 6 doctests failed sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/modular/modform/l_series_gross_zagier.py # 1 doctest failed sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/parallel/decorate.py # 2 doctests failed sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/quadratic_forms/genera/genus.py # 3 doctests failed sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/repl/interface_magic.py # 1 doctest failed sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/repl/interpreter.py # 2 doctests failed sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/repl/ipython_extension.py # 2 doctests failed sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/repl/ipython_kernel/interact.py # 2 doctests failed sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/repl/ipython_kernel/widgets_sagenb.py # 2 doctests failed sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/repl/load.py # 2 doctests failed sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/rings/integer_fake.pxd # 1 doctest failed sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/rings/polynomial/ore_polynomial_element.pyx # 6 doctests failed sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/rings/tate_algebra_ideal.pyx # 6 doctests failed sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/schemes/elliptic_curves/BSD.py # 3 doctests failed sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/schemes/elliptic_curves/ell_number_field.py # 1 doctest failed sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/schemes/elliptic_curves/ell_rational_field.py # 15 doctests failed sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/schemes/elliptic_curves/gp_simon.py # 1 doctest failed sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/structure/element.pyx # 37 doctests failed sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/structure/factory.pyx # 8 doctests failed sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/symbolic/pynac.pxi # 1 doctest failed sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/tests/books/computational-mathematics-with-sagemath/linsolve_doctest.py # 1 doctest failed sage -t --random-seed=293877373294513721178142072703805930767 sage/src/sage/tests/cmdline.py # 11 doctests failed Features detected for doctesting: sage.combinat,sage.geometry.polyhedron,sage.graphs,sage.plot,sage.rings.number_field,sage.rings.real_double,sage.symbolic,sagemath_doc_html,sphinx

OpenPGP_signature
Description: OpenPGP digital signature

--- End Message ---

--- Begin Message ---

Source: sagemath
Source-Version: 9.5-5
Done: Tobias Hansen <than...@debian.org>

We believe that the bug you reported is fixed in the latest version of
sagemath, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 1022...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Tobias Hansen <than...@debian.org> (supplier of updated sagemath package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 1.8
Date: Tue, 07 Feb 2023 07:40:09 +0000
Source: sagemath
Architecture: source
Version: 9.5-5
Distribution: unstable
Urgency: high
Maintainer: Debian Math Team <team+m...@tracker.debian.org>
Changed-By: Tobias Hansen <than...@debian.org>
Closes: 1013399 1020576 1022254 1022278 1025217 1025874 1028345 1028433
Changes:
 sagemath (9.5-5) unstable; urgency=high
 .
   * Rebuild against current dependencies
     (Closes: #1013399, #1020576, #1022254, #1022278,
              #1025217, #1025874, #1028345, #1028433)
   * New (Build-)Depends:
     - libgiac-dev >= 1.9.0.19+dfsg2-2
     - gap-dev (>= 4.12)
     - libgiac-dev (>= 1.9.0.35+dfsg2-1.1)
   * New patches:
     - u0-version-pari-2.15.patch                 #34537
     - u0-version-sphinx-4.4.patch                #33272
     - u0-version-sphinx-5.2.patch                #34615
     - u0-version-gap-4.12.patch                  #34391
     - u0-version-python-3.11.patch               #33842
     - u0-version-matplotlib-3.6.patch
     - u0-version-sympy-1.10.patch
     - u0-version-scipy-1.8.patch
     - u0-version-singular-4.3.1-p3.patch         #34851
     - dt-ignore-deprecation-warnings.patch
   * Allow up to 200 failed doctests.
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 15c27b80e370645234acff2c205ab0e2a729ef7e 101624 sagemath_9.5-5.debian.tar.xz
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sagemath_9.5-5_source.buildinfo
Files:
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 d0ce1c0726cf5c003fe5cc8bac8a52de 101624 math optional 
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--- End Message ---