Your message dated Sat, 24 Sep 2022 17:09:32 +0000 with message-id <e1oc8ei-004kd6...@fasolo.debian.org> and subject line Bug#1020031: fixed in khmer 3.0.0~a3+dfsg-4 has caused the Debian Bug report #1020031, regarding khmer: FTBFS: ld: cannot find build/temp.linux-x86_64-3.10/src/khmer/_cpy_khmer.o: No such file or directory to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 1020031: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1020031 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: khmer Version: 3.0.0~a3+dfsg-3 Severity: serious Justification: FTBFS Tags: bookworm sid ftbfs User: lu...@debian.org Usertags: ftbfs-20220917 ftbfs-bookworm Hi, During a rebuild of all packages in sid, your package failed to build on amd64. Relevant part (hopefully): > x86_64-linux-gnu-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 > -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. > -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time > -D_FORTIFY_SOURCE=2 > build/temp.linux-x86_64-cpython-310/khmer/_oxli/oxli_exception_convert.o > build/temp.linux-x86_64-cpython-310/khmer/_oxli/readaligner.o > build/temp.linux-x86_64-3.10/src/khmer/_cpy_khmer.o > build/temp.linux-x86_64-3.10/src/khmer/_cpy_utils.o > build/temp.linux-x86_64-3.10/src/khmer/_cpy_readparsers.o > build/temp.linux-x86_64-3.10/src/oxli/read_parsers.o > build/temp.linux-x86_64-3.10/src/oxli/kmer_hash.o > build/temp.linux-x86_64-3.10/src/oxli/hashtable.o > build/temp.linux-x86_64-3.10/src/oxli/hashgraph.o > build/temp.linux-x86_64-3.10/src/oxli/labelhash.o > build/temp.linux-x86_64-3.10/src/oxli/subset.o > build/temp.linux-x86_64-3.10/src/oxli/read_aligner.o > build/temp.linux-x86_64-3.10/src/oxli/hllcounter.o > build/temp.linux-x86_64-3.10/src/oxli/traversal.o > build/temp.linux-x86_64-3.10/src/oxli/kmer_filters.o > build/temp.linux-x86_64-3.10/src/oxli/assembler.o > build/temp.linux-x86_64-3.10/src/oxli/alphabets.o > build/temp.linux-x86_64-3.10/src/oxli/storage.o > build/temp.linux-x86_64-3.10/third-party/smhasher/MurmurHash3.o > third-party/cqf/gqf.o -L/usr/lib/x86_64-linux-gnu -lz -lbz2 -o > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_khmer/build/khmer/_oxli/readaligner.cpython-310-x86_64-linux-gnu.so > -fopenmp > /usr/bin/ld: cannot find build/temp.linux-x86_64-3.10/src/khmer/_cpy_khmer.o: > No such file or directory > /usr/bin/ld: cannot find build/temp.linux-x86_64-3.10/src/khmer/_cpy_utils.o: > No such file or directory > /usr/bin/ld: cannot find > build/temp.linux-x86_64-3.10/src/khmer/_cpy_readparsers.o: No such file or > directory > /usr/bin/ld: cannot find > build/temp.linux-x86_64-3.10/src/oxli/read_parsers.o: No such file or > directory > /usr/bin/ld: cannot find build/temp.linux-x86_64-3.10/src/oxli/kmer_hash.o: > No such file or directory > /usr/bin/ld: cannot find build/temp.linux-x86_64-3.10/src/oxli/hashtable.o: > No such file or directory > /usr/bin/ld: cannot find build/temp.linux-x86_64-3.10/src/oxli/hashgraph.o: > No such file or directory > /usr/bin/ld: cannot find build/temp.linux-x86_64-3.10/src/oxli/labelhash.o: > No such file or directory > /usr/bin/ld: cannot find build/temp.linux-x86_64-3.10/src/oxli/subset.o: No > such file or directory > /usr/bin/ld: cannot find > build/temp.linux-x86_64-3.10/src/oxli/read_aligner.o: No such file or > directory > /usr/bin/ld: cannot find build/temp.linux-x86_64-3.10/src/oxli/hllcounter.o: > No such file or directory > /usr/bin/ld: cannot find build/temp.linux-x86_64-3.10/src/oxli/traversal.o: > No such file or directory > /usr/bin/ld: cannot find > build/temp.linux-x86_64-3.10/src/oxli/kmer_filters.o: No such file or > directory > /usr/bin/ld: cannot find build/temp.linux-x86_64-3.10/src/oxli/assembler.o: > No such file or directory > /usr/bin/ld: cannot find build/temp.linux-x86_64-3.10/src/oxli/alphabets.o: > No such file or directory > /usr/bin/ld: cannot find build/temp.linux-x86_64-3.10/src/oxli/storage.o: No > such file or directory > /usr/bin/ld: cannot find > build/temp.linux-x86_64-3.10/third-party/smhasher/MurmurHash3.o: No such file > or directory > collect2: error: ld returned 1 exit status The full build log is available from: http://qa-logs.debian.net/2022/09/17/khmer_3.0.0~a3+dfsg-3_unstable.log All bugs filed during this archive rebuild are listed at: https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20220917;users=lu...@debian.org or: https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20220917&fusertaguser=lu...@debian.org&allbugs=1&cseverity=1&ctags=1&caffected=1#results A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! If you reassign this bug to another package, please marking it as 'affects'-ing this package. See https://www.debian.org/Bugs/server-control#affects If you fail to reproduce this, please provide a build log and diff it with mine so that we can identify if something relevant changed in the meantime.
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--- Begin Message ---Source: khmer Source-Version: 3.0.0~a3+dfsg-4 Done: Nilesh Patra <nil...@debian.org> We believe that the bug you reported is fixed in the latest version of khmer, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 1020...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Nilesh Patra <nil...@debian.org> (supplier of updated khmer package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Sat, 24 Sep 2022 21:04:43 +0530 Source: khmer Architecture: source Version: 3.0.0~a3+dfsg-4 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Nilesh Patra <nil...@debian.org> Closes: 1020031 Changes: khmer (3.0.0~a3+dfsg-4) unstable; urgency=medium . * Team Upload. * Add patch to find object files at the right location (Closes: #1020031) * d/rules: split oxli make rules into two, pass parameters/env-vars to not over-clean for make-all call Checksums-Sha1: 8ea0c4c67d9d625a023114f4ba03d6274eed0e0c 2580 khmer_3.0.0~a3+dfsg-4.dsc 4216f401de0cf89e22bb08167c6040b504e0d99b 17568 khmer_3.0.0~a3+dfsg-4.debian.tar.xz dd387169f899f2fa501100fe1f7b16cbf068cb70 10277 khmer_3.0.0~a3+dfsg-4_amd64.buildinfo Checksums-Sha256: 703e4ed60afa056fd272c1e0d20d7fe35ee46a48dacb1e2005a086329a2fce5a 2580 khmer_3.0.0~a3+dfsg-4.dsc e2bb4adb5d0d34e57911e4aad2929edde7ca55fc950ecfa9750468c0d74154cb 17568 khmer_3.0.0~a3+dfsg-4.debian.tar.xz 4d070a49177807a0c28338b65e837614a6cbad30a04d1e30bb65f450a9415e2a 10277 khmer_3.0.0~a3+dfsg-4_amd64.buildinfo Files: b29d775af2f71e1f4e4176c99783f3e3 2580 science optional khmer_3.0.0~a3+dfsg-4.dsc 7c20b8dbf1af1d5d394254334949aa61 17568 science optional khmer_3.0.0~a3+dfsg-4.debian.tar.xz 6650af589d014209c17c0854632a828d 10277 science optional khmer_3.0.0~a3+dfsg-4_amd64.buildinfo -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEPpmlJvXcwMu/HO6mALrnSzQzafEFAmMvJqkSHG5pbGVzaEBk ZWJpYW4ub3JnAAoJEAC650s0M2nxSmsP/jYdfxmSztmbiPyTKEZ9ju2XtlF+wJRe VaUXo2nhdhQ6MnPrICbYxRWfrXgYRqw0kS+fS83LbszxXHCp6UuE3PaaLTVh6wDO tfR+aSQwmW+uEkC8WgS2gMQfP9RTTGcU3e+TSyRKquhF3Edn8FQUVFKHIyMOcPmc LprFh1m3B0UpsuiWdCas33Ius1a2FpnQx5HcaWIZzIXChbgv1fnR/dqFzbBGuEV5 AhUQ+Os4taZ0UwxFXzaMQbR0jzFiJRr/ckSb+w/g7G9lpZbl073vCIyyYg/WcZhG kfAjxtjK+94iAt3IG81IF4pxD0UUPCta+3h6lVr9bgzzNhceRjohECCCksLwuUef 0/5XLYFg6E1Sc41r4zkMG88jzjDqarsHphUl9CIq1ZJ9EZSE+cFSqZVWD7DzNRFY XTq1a/gmyHV8pUaPikN8DHNKCfosWBYGcv2RpvwEJDQUavonmhcb3vdKf5YzFpj0 1zpQgGixHcsLUlBJyGoJ535Teh6Rh+HHnINVCz2rm1OpBTi9zPvjLBYj1eWGt4kh hJW78UvQzUqrn9yeZDq/Y6IddjmQYldGPFIqwhgvd2//jhatYJq0PrsRUauzwQvy 4TeoQUrbjNGFS/fIWLQfuNEwN+BH80mECBWH+NUAARaw4RxWsmlgN8SfNLDkf1jj eBeewgJC1P0u =swmj -----END PGP SIGNATURE-----
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