Your message dated Tue, 31 May 2022 13:19:35 +0000 with message-id <e1nw1mz-0000l0...@fasolo.debian.org> and subject line Bug#1011412: fixed in r-bioc-scater 1.24.0+ds-1 has caused the Debian Bug report #1011412, regarding r-bioc-scater: autopkgtest regression in testing to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 1011412: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1011412 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: r-bioc-scater Version: 1.18.3+ds-4 Severity: serious User: debian...@lists.debian.org Usertags: regression Hi Maintainer Sometime around 2021-09-23, r-bioc-scater's autopkgtests regressed in testing [1]. I've copied, from a current log of 1.22.0+ds-2 in unstable, what I hope is the relevant part below. Regards Graham [1] https://ci.debian.net/packages/r/r-bioc-scater/testing/amd64/ ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error (test-red-dim.R:224:9): runTSNE works as expected ───────────────────── <packageNotFoundError/error/condition> Error in `loadNamespace(x)`: there is no package called ‘snifter’ Backtrace: ▆ 1. ├─scater::runTSNE(normed, use_fitsne = TRUE, random_state = 100L) at test-red-dim.R:224:8 2. │ ├─scater::calculateTSNE(y, ...) 3. │ └─scater::calculateTSNE(y, ...) 4. │ └─scater .local(x, ...) 5. │ └─scater:::.calculate_tsne(...) 6. │ └─base::do.call(snifter::fitsne, c(list(x), args, simplified = TRUE)) 7. └─base::loadNamespace(x) 8. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL) 9. └─base withOneRestart(expr, restarts[[1L]]) 10. └─base doWithOneRestart(return(expr), restart) [ FAIL 1 | WARN 2 | SKIP 0 | PASS 509 ] Error: Test failures Execution halted
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--- Begin Message ---Source: r-bioc-scater Source-Version: 1.24.0+ds-1 Done: Andreas Tille <ti...@debian.org> We believe that the bug you reported is fixed in the latest version of r-bioc-scater, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 1011...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <ti...@debian.org> (supplier of updated r-bioc-scater package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Tue, 31 May 2022 14:56:07 +0200 Source: r-bioc-scater Architecture: source Version: 1.24.0+ds-1 Distribution: unstable Urgency: medium Maintainer: Debian R Packages Maintainers <r-pkg-t...@alioth-lists.debian.net> Changed-By: Andreas Tille <ti...@debian.org> Closes: 1011412 Changes: r-bioc-scater (1.24.0+ds-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.1 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) * Build-Depends: r-cran-rcppml * Ignore test requiring not yet packaged r-bioc-snifter Closes: #1011412 Checksums-Sha1: f57e65f9647e52e9751e92f7aed059e1859176df 2479 r-bioc-scater_1.24.0+ds-1.dsc 04cdb705400ff6be630670e88c2cc5ca8a63da43 232888 r-bioc-scater_1.24.0+ds.orig.tar.xz cd90741f171375ae3441aebefb0c83d24e06c93a 3608 r-bioc-scater_1.24.0+ds-1.debian.tar.xz 2dea999605ae3f52e54fc6eae77fe5a96d0377c5 13003 r-bioc-scater_1.24.0+ds-1_amd64.buildinfo Checksums-Sha256: dc513b1518e6f9a05c1c0e71e55bd62eaf17ddd7c59547874f4eac67116f41b8 2479 r-bioc-scater_1.24.0+ds-1.dsc 662f0e6f80e7d4a7349b3855b79f13f416bfe75859faac5dcccb775163f63623 232888 r-bioc-scater_1.24.0+ds.orig.tar.xz 9192759f9cc1e62cd3ed4fb3b7675a1dd8b31109d5b0a65b2353edb0b9260623 3608 r-bioc-scater_1.24.0+ds-1.debian.tar.xz d4bb95af51f77524da733078b5f27bf7fa958292e6e2ee3aea96bd0dbfe3fd3b 13003 r-bioc-scater_1.24.0+ds-1_amd64.buildinfo Files: 85ee9ea2de5c713c26d5a6dd066475c5 2479 gnu-r optional r-bioc-scater_1.24.0+ds-1.dsc b87de196dc8b47d4012739b9a74ce5ef 232888 gnu-r optional r-bioc-scater_1.24.0+ds.orig.tar.xz 09555b0bf0599af07f4ac6cc9ad0b0ec 3608 gnu-r optional r-bioc-scater_1.24.0+ds-1.debian.tar.xz 1a4afa3c7ded81f5611aa40f8afa0472 13003 gnu-r optional r-bioc-scater_1.24.0+ds-1_amd64.buildinfo -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmKWEYoRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFvQxAAiv1y1o4VYWYP/5/3WVU03C/LEwO9OUR9 Gc7V6/bM8D3CUazZbUqcgLvL95Jn+Phwj58E681ld5EBS4b0dFzG66QXM3/3oGFd wduYaxdJg7mnqUpM/pJy5o7S2Dz3bjNn1uQZ9hOeo1MdYDPppirmhDrqxfWkzmVw hEyzdKXT7yCSohnsTEn0ekI+2+lzhtSARuRko9cMQXuxp8Pxy8VQ8sJATQEejuf8 +Jr0bmsoXX0CW6xqPFYzlxX3NIFHzp4QRY5F1adMzNKKFqGCTC1YDzqQ026Be+cz fry11f5WAHsU9a7jUC2nHO4Ontztc/fn5FrCvJZ08tlJeGoQt5/+viBfZh0/sHLz qkS8G2gS/b7z+qViRhAOS4S7eBZaLziaMrNoasLgJRm/OW699F23G1rfJOGvEAPJ 1p0vIpwfQJldUHGVjd3dkQj4AsVQInIr2OjWzFsdqRaDcwAwbyryShurag79Rn/u //dlrW0tzN2dRZoRJtqa7k//x+nITuWm+WAlT8ohxyeaMgrhsDqKXzsipFZ9JWAf Peya5KvXCsGhafQuuWtI0miXe1UFLXG55aYe1moCWc69VGoKAfz/9FG5Xi1KVEoZ 1BMmB4+ukcPUp2Tas0YW+lhtg6aFb2h1dvCDoV1nj9MRKaRtSOX/GMRdqKvKsB5D 6EJl0Qg0Vow= =X0ti -----END PGP SIGNATURE-----
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