Source: r-bioc-scater Version: 1.18.3+ds-4 Severity: serious User: debian...@lists.debian.org Usertags: regression
Hi Maintainer Sometime around 2021-09-23, r-bioc-scater's autopkgtests regressed in testing [1]. I've copied, from a current log of 1.22.0+ds-2 in unstable, what I hope is the relevant part below. Regards Graham [1] https://ci.debian.net/packages/r/r-bioc-scater/testing/amd64/ ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error (test-red-dim.R:224:9): runTSNE works as expected ───────────────────── <packageNotFoundError/error/condition> Error in `loadNamespace(x)`: there is no package called ‘snifter’ Backtrace: ▆ 1. ├─scater::runTSNE(normed, use_fitsne = TRUE, random_state = 100L) at test-red-dim.R:224:8 2. │ ├─scater::calculateTSNE(y, ...) 3. │ └─scater::calculateTSNE(y, ...) 4. │ └─scater .local(x, ...) 5. │ └─scater:::.calculate_tsne(...) 6. │ └─base::do.call(snifter::fitsne, c(list(x), args, simplified = TRUE)) 7. └─base::loadNamespace(x) 8. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL) 9. └─base withOneRestart(expr, restarts[[1L]]) 10. └─base doWithOneRestart(return(expr), restart) [ FAIL 1 | WARN 2 | SKIP 0 | PASS 509 ] Error: Test failures Execution halted
