Your message dated Wed, 22 Dec 2021 10:03:28 +0000 with message-id <e1mzyt2-000b7y...@fasolo.debian.org> and subject line Bug#1002217: fixed in gatb-core 1.4.2+dfsg-8 has caused the Debian Bug report #1002217, regarding gatb-core: FTBFS: dpkg-gensymbols: error: some symbols or patterns disappeared in the symbols file: see diff output below to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 1002217: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1002217 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: gatb-core Version: 1.4.2+dfsg-7 Severity: serious Justification: FTBFS Tags: bookworm sid ftbfs User: lu...@debian.org Usertags: ftbfs-20211220 ftbfs-bookworm Hi, During a rebuild of all packages in sid, your package failed to build on amd64. Relevant part (hopefully): > make[1]: Entering directory '/<<PKGBUILDDIR>>' > # test data are installed manually from main source to enable Architecture > all builds > rm -rf debian/tmp/usr/test/db > dh_missing > make[1]: Leaving directory '/<<PKGBUILDDIR>>' > dh_dwz -a -O--sourcedirectory=gatb-core > dh_strip -a -O--sourcedirectory=gatb-core > dh_makeshlibs -a -O--sourcedirectory=gatb-core > dpkg-gensymbols: warning: some new symbols appeared in the symbols file: see > diff output below > dpkg-gensymbols: error: some symbols or patterns disappeared in the symbols > file: see diff output below > dpkg-gensymbols: warning: debian/libgatbcore3/DEBIAN/symbols doesn't match > completely debian/libgatbcore3.symbols.amd64 > --- debian/libgatbcore3.symbols.amd64 (libgatbcore3_1.4.2+dfsg-7_amd64) > +++ dpkg-gensymbolsRm0XCf 2021-12-20 18:43:02.722758120 +0000 > @@ -428,6 +428,7 @@ > > _ZN4gatb4core4kmer4impl12BloomBuilderILm32EE5buildEPNS0_5tools2dp8IteratorINS2_4KmerILm32EE5CountEEEPNS5_4misc11IPropertiesE@Base > 1.4.2 > > _ZN4gatb4core4kmer4impl12BloomBuilderILm64EE5buildEPNS0_5tools2dp8IteratorINS2_4KmerILm64EE5CountEEEPNS5_4misc11IPropertiesE@Base > 1.4.2 > > _ZN4gatb4core4kmer4impl12BloomBuilderILm96EE5buildEPNS0_5tools2dp8IteratorINS2_4KmerILm96EE5CountEEEPNS5_4misc11IPropertiesE@Base > 1.4.2 > + _ZN4gatb4core4kmer4impl12KxmerPointerILm128EE4nextEv@Base 1.4.2+dfsg-7 > > _ZN4gatb4core4kmer4impl12KxmerPointerILm128EEC1EPPNS0_5tools4math8LargeIntILi4EEEiiiiiPmPPt@Base > 1.4.2 > > _ZN4gatb4core4kmer4impl12KxmerPointerILm128EEC2EPPNS0_5tools4math8LargeIntILi4EEEiiiiiPmPPt@Base > 1.4.2 > > _ZN4gatb4core4kmer4impl12KxmerPointerILm32EEC1EPPNS0_5tools4math8LargeIntILi1EEEiiiiiPmPPt@Base > 1.4.2 > @@ -5328,9 +5329,9 @@ > > _ZN4gatb4core8debruijn4impl11GraphVectorINS2_15BranchingEdge_tINS2_6Node_tINS0_5tools4math15IntegerTemplateIN5boost3mpl7vector4IN4mpl_4int_ILi32EEENSD_ILi64EEENSD_ILi96EEENSD_ILi128EEEEEEEEENS2_6Edge_tISK_EEEELi16EED1Ev@Base > 1.4.2 > > _ZN4gatb4core8debruijn4impl11GraphVectorINS2_15BranchingEdge_tINS2_6Node_tINS0_5tools4math15IntegerTemplateIN5boost3mpl7vector4IN4mpl_4int_ILi32EEENSD_ILi64EEENSD_ILi96EEENSD_ILi128EEEEEEEEENS2_6Edge_tISK_EEEELi16EED2Ev@Base > 1.4.2 > > _ZN4gatb4core8debruijn4impl11GraphVectorINS2_6Edge_tINS2_6Node_tINS0_5tools4math15IntegerTemplateIN5boost3mpl7vector4IN4mpl_4int_ILi32EEENSD_ILi64EEENSD_ILi96EEENSD_ILi128EEEEEEEEEEELi16EEC1EOSM_@Base > 1.4.2 > - > _ZN4gatb4core8debruijn4impl11GraphVectorINS2_6Edge_tINS2_6Node_tINS0_5tools4math15IntegerTemplateIN5boost3mpl7vector4IN4mpl_4int_ILi32EEENSD_ILi64EEENSD_ILi96EEENSD_ILi128EEEEEEEEEEELi16EEC1Ev@Base > 1.4.2 > +#MISSING: 1.4.2+dfsg-7# > _ZN4gatb4core8debruijn4impl11GraphVectorINS2_6Edge_tINS2_6Node_tINS0_5tools4math15IntegerTemplateIN5boost3mpl7vector4IN4mpl_4int_ILi32EEENSD_ILi64EEENSD_ILi96EEENSD_ILi128EEEEEEEEEEELi16EEC1Ev@Base > 1.4.2 > > _ZN4gatb4core8debruijn4impl11GraphVectorINS2_6Edge_tINS2_6Node_tINS0_5tools4math15IntegerTemplateIN5boost3mpl7vector4IN4mpl_4int_ILi32EEENSD_ILi64EEENSD_ILi96EEENSD_ILi128EEEEEEEEEEELi16EEC2EOSM_@Base > 1.4.2 > - > _ZN4gatb4core8debruijn4impl11GraphVectorINS2_6Edge_tINS2_6Node_tINS0_5tools4math15IntegerTemplateIN5boost3mpl7vector4IN4mpl_4int_ILi32EEENSD_ILi64EEENSD_ILi96EEENSD_ILi128EEEEEEEEEEELi16EEC2Ev@Base > 1.4.2 > +#MISSING: 1.4.2+dfsg-7# > _ZN4gatb4core8debruijn4impl11GraphVectorINS2_6Edge_tINS2_6Node_tINS0_5tools4math15IntegerTemplateIN5boost3mpl7vector4IN4mpl_4int_ILi32EEENSD_ILi64EEENSD_ILi96EEENSD_ILi128EEEEEEEEEEELi16EEC2Ev@Base > 1.4.2 > > _ZN4gatb4core8debruijn4impl11GraphVectorINS2_6Edge_tINS2_6Node_tINS0_5tools4math15IntegerTemplateIN5boost3mpl7vector4IN4mpl_4int_ILi32EEENSD_ILi64EEENSD_ILi96EEENSD_ILi128EEEEEEEEEEELi16EED1Ev@Base > 1.4.2 > > _ZN4gatb4core8debruijn4impl11GraphVectorINS2_6Edge_tINS2_6Node_tINS0_5tools4math15IntegerTemplateIN5boost3mpl7vector4IN4mpl_4int_ILi32EEENSD_ILi64EEENSD_ILi96EEENSD_ILi128EEEEEEEEEEELi16EED2Ev@Base > 1.4.2 > > _ZN4gatb4core8debruijn4impl11GraphVectorINS2_6Node_tINS0_5tools4math15IntegerTemplateIN5boost3mpl7vector4IN4mpl_4int_ILi32EEENSC_ILi64EEENSC_ILi96EEENSC_ILi128EEEEEEEEELi16EEC1EOSK_@Base > 1.4.2 > @@ -5716,19 +5717,19 @@ > > _ZN4gatb4core8debruijn4impl13GraphTemplateINS2_6Node_tINS0_5tools4math8LargeIntILi4EEEEENS2_6Edge_tIS9_EEN5boost7variantINS2_9GraphDataILm128EEEJEEEED2Ev@Base > 1.4.2 > > _ZN4gatb4core8debruijn4impl13GraphTemplateINS2_6Node_tINS0_5tools4math8LargeIntILi4EEEEENS2_6Edge_tIS9_EEN5boost7variantINS2_9GraphDataILm128EEEJEEEEaSERKSH_@Base > 1.4.2 > _ZN4gatb4core8debruijn4impl13bcalm_loggingE@Base 1.4.2 > - > _ZN4gatb4core8debruijn4impl14CustomListenerINS0_4kmer4impl4KmerILm128EE5CountEE15finishPostponedEv@Base > 1.4.2 > +#MISSING: 1.4.2+dfsg-7# > _ZN4gatb4core8debruijn4impl14CustomListenerINS0_4kmer4impl4KmerILm128EE5CountEE15finishPostponedEv@Base > 1.4.2 > > _ZN4gatb4core8debruijn4impl14CustomListenerINS0_4kmer4impl4KmerILm128EE5CountEE6finishEv@Base > 1.4.2 > > _ZN4gatb4core8debruijn4impl14CustomListenerINS0_4kmer4impl4KmerILm128EE5CountEED0Ev@Base > 1.4.2 > > _ZN4gatb4core8debruijn4impl14CustomListenerINS0_4kmer4impl4KmerILm128EE5CountEED1Ev@Base > 1.4.2 > - > _ZN4gatb4core8debruijn4impl14CustomListenerINS0_4kmer4impl4KmerILm32EE5CountEE15finishPostponedEv@Base > 1.4.2 > +#MISSING: 1.4.2+dfsg-7# > _ZN4gatb4core8debruijn4impl14CustomListenerINS0_4kmer4impl4KmerILm32EE5CountEE15finishPostponedEv@Base > 1.4.2 > > _ZN4gatb4core8debruijn4impl14CustomListenerINS0_4kmer4impl4KmerILm32EE5CountEE6finishEv@Base > 1.4.2 > > _ZN4gatb4core8debruijn4impl14CustomListenerINS0_4kmer4impl4KmerILm32EE5CountEED0Ev@Base > 1.4.2 > > _ZN4gatb4core8debruijn4impl14CustomListenerINS0_4kmer4impl4KmerILm32EE5CountEED1Ev@Base > 1.4.2 > - > _ZN4gatb4core8debruijn4impl14CustomListenerINS0_4kmer4impl4KmerILm64EE5CountEE15finishPostponedEv@Base > 1.4.2 > +#MISSING: 1.4.2+dfsg-7# > _ZN4gatb4core8debruijn4impl14CustomListenerINS0_4kmer4impl4KmerILm64EE5CountEE15finishPostponedEv@Base > 1.4.2 > > _ZN4gatb4core8debruijn4impl14CustomListenerINS0_4kmer4impl4KmerILm64EE5CountEE6finishEv@Base > 1.4.2 > > _ZN4gatb4core8debruijn4impl14CustomListenerINS0_4kmer4impl4KmerILm64EE5CountEED0Ev@Base > 1.4.2 > > _ZN4gatb4core8debruijn4impl14CustomListenerINS0_4kmer4impl4KmerILm64EE5CountEED1Ev@Base > 1.4.2 > - > _ZN4gatb4core8debruijn4impl14CustomListenerINS0_4kmer4impl4KmerILm96EE5CountEE15finishPostponedEv@Base > 1.4.2 > +#MISSING: 1.4.2+dfsg-7# > _ZN4gatb4core8debruijn4impl14CustomListenerINS0_4kmer4impl4KmerILm96EE5CountEE15finishPostponedEv@Base > 1.4.2 > > _ZN4gatb4core8debruijn4impl14CustomListenerINS0_4kmer4impl4KmerILm96EE5CountEE6finishEv@Base > 1.4.2 > > _ZN4gatb4core8debruijn4impl14CustomListenerINS0_4kmer4impl4KmerILm96EE5CountEED0Ev@Base > 1.4.2 > > _ZN4gatb4core8debruijn4impl14CustomListenerINS0_4kmer4impl4KmerILm96EE5CountEED1Ev@Base > 1.4.2 > dh_makeshlibs: error: failing due to earlier errors > make: *** [debian/rules:15: binary] Error 25 The full build log is available from: http://qa-logs.debian.net/2021/12/20/gatb-core_1.4.2+dfsg-7_unstable.log A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! If you reassign this bug to another package, please marking it as 'affects'-ing this package. See https://www.debian.org/Bugs/server-control#affects If you fail to reproduce this, please provide a build log and diff it with mine so that we can identify if something relevant changed in the meantime.
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--- Begin Message ---Source: gatb-core Source-Version: 1.4.2+dfsg-8 Done: Andreas Tille <ti...@debian.org> We believe that the bug you reported is fixed in the latest version of gatb-core, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 1002...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <ti...@debian.org> (supplier of updated gatb-core package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Wed, 22 Dec 2021 09:34:27 +0100 Source: gatb-core Architecture: source Version: 1.4.2+dfsg-8 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Closes: 1002217 Changes: gatb-core (1.4.2+dfsg-8) unstable; urgency=medium . * Fix symbols file Closes: #1002217 Checksums-Sha1: 3f6329f223359eb9304918fb70b2cd254c3dccbd 2317 gatb-core_1.4.2+dfsg-8.dsc 084a9248b0f68726c15bd51488cd207f32c9e83f 97320 gatb-core_1.4.2+dfsg-8.debian.tar.xz 7141220a3f2d59f794ea139c7978ac567edb2e90 10732 gatb-core_1.4.2+dfsg-8_amd64.buildinfo Checksums-Sha256: 4bc3d4d19ff61be2c3684fd33e1fda378a17c187ce00589e4f9b81419a5ad906 2317 gatb-core_1.4.2+dfsg-8.dsc 94aa3cfa4b81299d4c0417ac4f5a1c05167ddea35c5bda946e7c75b82e09808d 97320 gatb-core_1.4.2+dfsg-8.debian.tar.xz 1878c91c3ae4069b1148569c3d1070372b5b6543bcc9c90f0eb244aa8d579f7b 10732 gatb-core_1.4.2+dfsg-8_amd64.buildinfo Files: 58038eba4e7bdfbb818731e45b2b9617 2317 science optional gatb-core_1.4.2+dfsg-8.dsc f14e7f26c8837d1cd7b1bfd4d423f85d 97320 science optional gatb-core_1.4.2+dfsg-8.debian.tar.xz cba5ad66e25a3ebdfbd028def44bcf38 10732 science optional gatb-core_1.4.2+dfsg-8_amd64.buildinfo -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmHC8uYRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFikxAAhjaIFSOnkVBgPR8Hek0YXuCU4tFBQRir +qrgaEzEHX5XAD9LLbrFfDkP+Pv3ze5bpPKAG2/P+fGIoZVpZDaSZn28h7cFvCi9 vDkdwuoZmVhxiD6ak1JZGe8g9l/9pwSBAlHOcYhEVEg6jVHni+U1PbJcy/ewFF21 NdtmHxeknceA+0h9ePcwk1C5+BdXfU64s/Uw8lZha3QhFlPCuuXeEHPkRH9U7IRt b+d48xOFlSPBDOT2XRJUl7ifn8pDRHE2eQolcrUnC4M+Z3Qvrr5mHdr9a818f65+ Yh1AzBVv7WWyARFV2eJQPnnF/ZQgsFzF0HK0LQxCf7AUGKGdx9vEeZP4HRvPuy76 uqyFy0CLRTUbQciw5mLct3zDOZGhMZXDRo41Y0ugoLvyu9VshBiJLw632xOTv+os nx5FfF63H2GcbuV8cuFok2YURk9swUF7bAV1870r7/Oppg4yKsiFFdt0Ij33DOjK YQt7sin5+9LClQiX4giaLmIHxQVQzzlSNbNRAvmaxRZPXc3trFkMtAxqrLbz+mR4 uhHdRfqNHbHnLg0D33Dhb4ccI+Qyz886uxvwGMybcRknoEATCiDo3HgEUuqArw5W VyDIl+iBps9szmh4oISp0r/P3mg8Y+FEEUZ3ERWTBEaJ4Yl2HFq4IAtsrxRqkl2P N2d69YQj7ms= =b/gz -----END PGP SIGNATURE-----
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