Source: gatb-core Version: 1.4.2+dfsg-7 Severity: serious Justification: FTBFS Tags: bookworm sid ftbfs User: lu...@debian.org Usertags: ftbfs-20211220 ftbfs-bookworm
Hi, During a rebuild of all packages in sid, your package failed to build on amd64. Relevant part (hopefully): > make[1]: Entering directory '/<<PKGBUILDDIR>>' > # test data are installed manually from main source to enable Architecture > all builds > rm -rf debian/tmp/usr/test/db > dh_missing > make[1]: Leaving directory '/<<PKGBUILDDIR>>' > dh_dwz -a -O--sourcedirectory=gatb-core > dh_strip -a -O--sourcedirectory=gatb-core > dh_makeshlibs -a -O--sourcedirectory=gatb-core > dpkg-gensymbols: warning: some new symbols appeared in the symbols file: see > diff output below > dpkg-gensymbols: error: some symbols or patterns disappeared in the symbols > file: see diff output below > dpkg-gensymbols: warning: debian/libgatbcore3/DEBIAN/symbols doesn't match > completely debian/libgatbcore3.symbols.amd64 > --- debian/libgatbcore3.symbols.amd64 (libgatbcore3_1.4.2+dfsg-7_amd64) > +++ dpkg-gensymbolsRm0XCf 2021-12-20 18:43:02.722758120 +0000 > @@ -428,6 +428,7 @@ > > _ZN4gatb4core4kmer4impl12BloomBuilderILm32EE5buildEPNS0_5tools2dp8IteratorINS2_4KmerILm32EE5CountEEEPNS5_4misc11IPropertiesE@Base > 1.4.2 > > _ZN4gatb4core4kmer4impl12BloomBuilderILm64EE5buildEPNS0_5tools2dp8IteratorINS2_4KmerILm64EE5CountEEEPNS5_4misc11IPropertiesE@Base > 1.4.2 > > _ZN4gatb4core4kmer4impl12BloomBuilderILm96EE5buildEPNS0_5tools2dp8IteratorINS2_4KmerILm96EE5CountEEEPNS5_4misc11IPropertiesE@Base > 1.4.2 > + _ZN4gatb4core4kmer4impl12KxmerPointerILm128EE4nextEv@Base 1.4.2+dfsg-7 > > _ZN4gatb4core4kmer4impl12KxmerPointerILm128EEC1EPPNS0_5tools4math8LargeIntILi4EEEiiiiiPmPPt@Base > 1.4.2 > > _ZN4gatb4core4kmer4impl12KxmerPointerILm128EEC2EPPNS0_5tools4math8LargeIntILi4EEEiiiiiPmPPt@Base > 1.4.2 > > _ZN4gatb4core4kmer4impl12KxmerPointerILm32EEC1EPPNS0_5tools4math8LargeIntILi1EEEiiiiiPmPPt@Base > 1.4.2 > @@ -5328,9 +5329,9 @@ > > _ZN4gatb4core8debruijn4impl11GraphVectorINS2_15BranchingEdge_tINS2_6Node_tINS0_5tools4math15IntegerTemplateIN5boost3mpl7vector4IN4mpl_4int_ILi32EEENSD_ILi64EEENSD_ILi96EEENSD_ILi128EEEEEEEEENS2_6Edge_tISK_EEEELi16EED1Ev@Base > 1.4.2 > > _ZN4gatb4core8debruijn4impl11GraphVectorINS2_15BranchingEdge_tINS2_6Node_tINS0_5tools4math15IntegerTemplateIN5boost3mpl7vector4IN4mpl_4int_ILi32EEENSD_ILi64EEENSD_ILi96EEENSD_ILi128EEEEEEEEENS2_6Edge_tISK_EEEELi16EED2Ev@Base > 1.4.2 > > _ZN4gatb4core8debruijn4impl11GraphVectorINS2_6Edge_tINS2_6Node_tINS0_5tools4math15IntegerTemplateIN5boost3mpl7vector4IN4mpl_4int_ILi32EEENSD_ILi64EEENSD_ILi96EEENSD_ILi128EEEEEEEEEEELi16EEC1EOSM_@Base > 1.4.2 > - > _ZN4gatb4core8debruijn4impl11GraphVectorINS2_6Edge_tINS2_6Node_tINS0_5tools4math15IntegerTemplateIN5boost3mpl7vector4IN4mpl_4int_ILi32EEENSD_ILi64EEENSD_ILi96EEENSD_ILi128EEEEEEEEEEELi16EEC1Ev@Base > 1.4.2 > +#MISSING: 1.4.2+dfsg-7# > _ZN4gatb4core8debruijn4impl11GraphVectorINS2_6Edge_tINS2_6Node_tINS0_5tools4math15IntegerTemplateIN5boost3mpl7vector4IN4mpl_4int_ILi32EEENSD_ILi64EEENSD_ILi96EEENSD_ILi128EEEEEEEEEEELi16EEC1Ev@Base > 1.4.2 > > _ZN4gatb4core8debruijn4impl11GraphVectorINS2_6Edge_tINS2_6Node_tINS0_5tools4math15IntegerTemplateIN5boost3mpl7vector4IN4mpl_4int_ILi32EEENSD_ILi64EEENSD_ILi96EEENSD_ILi128EEEEEEEEEEELi16EEC2EOSM_@Base > 1.4.2 > - > _ZN4gatb4core8debruijn4impl11GraphVectorINS2_6Edge_tINS2_6Node_tINS0_5tools4math15IntegerTemplateIN5boost3mpl7vector4IN4mpl_4int_ILi32EEENSD_ILi64EEENSD_ILi96EEENSD_ILi128EEEEEEEEEEELi16EEC2Ev@Base > 1.4.2 > +#MISSING: 1.4.2+dfsg-7# > _ZN4gatb4core8debruijn4impl11GraphVectorINS2_6Edge_tINS2_6Node_tINS0_5tools4math15IntegerTemplateIN5boost3mpl7vector4IN4mpl_4int_ILi32EEENSD_ILi64EEENSD_ILi96EEENSD_ILi128EEEEEEEEEEELi16EEC2Ev@Base > 1.4.2 > > _ZN4gatb4core8debruijn4impl11GraphVectorINS2_6Edge_tINS2_6Node_tINS0_5tools4math15IntegerTemplateIN5boost3mpl7vector4IN4mpl_4int_ILi32EEENSD_ILi64EEENSD_ILi96EEENSD_ILi128EEEEEEEEEEELi16EED1Ev@Base > 1.4.2 > > _ZN4gatb4core8debruijn4impl11GraphVectorINS2_6Edge_tINS2_6Node_tINS0_5tools4math15IntegerTemplateIN5boost3mpl7vector4IN4mpl_4int_ILi32EEENSD_ILi64EEENSD_ILi96EEENSD_ILi128EEEEEEEEEEELi16EED2Ev@Base > 1.4.2 > > _ZN4gatb4core8debruijn4impl11GraphVectorINS2_6Node_tINS0_5tools4math15IntegerTemplateIN5boost3mpl7vector4IN4mpl_4int_ILi32EEENSC_ILi64EEENSC_ILi96EEENSC_ILi128EEEEEEEEELi16EEC1EOSK_@Base > 1.4.2 > @@ -5716,19 +5717,19 @@ > > _ZN4gatb4core8debruijn4impl13GraphTemplateINS2_6Node_tINS0_5tools4math8LargeIntILi4EEEEENS2_6Edge_tIS9_EEN5boost7variantINS2_9GraphDataILm128EEEJEEEED2Ev@Base > 1.4.2 > > _ZN4gatb4core8debruijn4impl13GraphTemplateINS2_6Node_tINS0_5tools4math8LargeIntILi4EEEEENS2_6Edge_tIS9_EEN5boost7variantINS2_9GraphDataILm128EEEJEEEEaSERKSH_@Base > 1.4.2 > _ZN4gatb4core8debruijn4impl13bcalm_loggingE@Base 1.4.2 > - > _ZN4gatb4core8debruijn4impl14CustomListenerINS0_4kmer4impl4KmerILm128EE5CountEE15finishPostponedEv@Base > 1.4.2 > +#MISSING: 1.4.2+dfsg-7# > _ZN4gatb4core8debruijn4impl14CustomListenerINS0_4kmer4impl4KmerILm128EE5CountEE15finishPostponedEv@Base > 1.4.2 > > _ZN4gatb4core8debruijn4impl14CustomListenerINS0_4kmer4impl4KmerILm128EE5CountEE6finishEv@Base > 1.4.2 > > _ZN4gatb4core8debruijn4impl14CustomListenerINS0_4kmer4impl4KmerILm128EE5CountEED0Ev@Base > 1.4.2 > > _ZN4gatb4core8debruijn4impl14CustomListenerINS0_4kmer4impl4KmerILm128EE5CountEED1Ev@Base > 1.4.2 > - > _ZN4gatb4core8debruijn4impl14CustomListenerINS0_4kmer4impl4KmerILm32EE5CountEE15finishPostponedEv@Base > 1.4.2 > +#MISSING: 1.4.2+dfsg-7# > _ZN4gatb4core8debruijn4impl14CustomListenerINS0_4kmer4impl4KmerILm32EE5CountEE15finishPostponedEv@Base > 1.4.2 > > _ZN4gatb4core8debruijn4impl14CustomListenerINS0_4kmer4impl4KmerILm32EE5CountEE6finishEv@Base > 1.4.2 > > _ZN4gatb4core8debruijn4impl14CustomListenerINS0_4kmer4impl4KmerILm32EE5CountEED0Ev@Base > 1.4.2 > > _ZN4gatb4core8debruijn4impl14CustomListenerINS0_4kmer4impl4KmerILm32EE5CountEED1Ev@Base > 1.4.2 > - > _ZN4gatb4core8debruijn4impl14CustomListenerINS0_4kmer4impl4KmerILm64EE5CountEE15finishPostponedEv@Base > 1.4.2 > +#MISSING: 1.4.2+dfsg-7# > _ZN4gatb4core8debruijn4impl14CustomListenerINS0_4kmer4impl4KmerILm64EE5CountEE15finishPostponedEv@Base > 1.4.2 > > _ZN4gatb4core8debruijn4impl14CustomListenerINS0_4kmer4impl4KmerILm64EE5CountEE6finishEv@Base > 1.4.2 > > _ZN4gatb4core8debruijn4impl14CustomListenerINS0_4kmer4impl4KmerILm64EE5CountEED0Ev@Base > 1.4.2 > > _ZN4gatb4core8debruijn4impl14CustomListenerINS0_4kmer4impl4KmerILm64EE5CountEED1Ev@Base > 1.4.2 > - > _ZN4gatb4core8debruijn4impl14CustomListenerINS0_4kmer4impl4KmerILm96EE5CountEE15finishPostponedEv@Base > 1.4.2 > +#MISSING: 1.4.2+dfsg-7# > _ZN4gatb4core8debruijn4impl14CustomListenerINS0_4kmer4impl4KmerILm96EE5CountEE15finishPostponedEv@Base > 1.4.2 > > _ZN4gatb4core8debruijn4impl14CustomListenerINS0_4kmer4impl4KmerILm96EE5CountEE6finishEv@Base > 1.4.2 > > _ZN4gatb4core8debruijn4impl14CustomListenerINS0_4kmer4impl4KmerILm96EE5CountEED0Ev@Base > 1.4.2 > > _ZN4gatb4core8debruijn4impl14CustomListenerINS0_4kmer4impl4KmerILm96EE5CountEED1Ev@Base > 1.4.2 > dh_makeshlibs: error: failing due to earlier errors > make: *** [debian/rules:15: binary] Error 25 The full build log is available from: http://qa-logs.debian.net/2021/12/20/gatb-core_1.4.2+dfsg-7_unstable.log A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! If you reassign this bug to another package, please marking it as 'affects'-ing this package. See https://www.debian.org/Bugs/server-control#affects If you fail to reproduce this, please provide a build log and diff it with mine so that we can identify if something relevant changed in the meantime.
