Your message dated Mon, 16 Nov 2020 22:00:11 +0000 with message-id <e1kemxj-000cu9...@fasolo.debian.org> and subject line Bug#973639: fixed in gromacs 2021~beta2-2 has caused the Debian Bug report #973639, regarding libgromacs6: missing Breaks+Replaces: libgromacs5 to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 973639: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=973639 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Package: libgromacs6 Version: 2021~beta1-1 Severity: serious User: debian...@lists.debian.org Usertags: piuparts Hi, during a test with piuparts I noticed your package fails to upgrade from 'sid' to 'experimental'. It installed fine in 'sid', then the upgrade to 'experimental' fails because it tries to overwrite other packages files without declaring a Breaks+Replaces relation. See policy 7.6 at https://www.debian.org/doc/debian-policy/ch-relationships.html#overwriting-files-and-replacing-packages-replaces >From the attached log (scroll to the bottom...): Preparing to unpack .../libgromacs6_2021~beta1-1_amd64.deb ... Unpacking libgromacs6:amd64 (2021~beta1-1) ... dpkg: error processing archive /var/cache/apt/archives/libgromacs6_2021~beta1-1_amd64.deb (--unpack): trying to overwrite '/usr/lib/x86_64-linux-gnu/libgmxapi.so.0.1.0', which is also in package libgromacs5:amd64 2020.4-2 dpkg-deb: error: paste subprocess was killed by signal (Broken pipe) Errors were encountered while processing: /var/cache/apt/archives/libgromacs6_2021~beta1-1_amd64.deb Shared libraries with independent soversions shouldn't be bundled in the same binary package. cheers, Andreas
libgromacs5=2020.4-2_libgromacs6=2021~beta1-1.log.gz
Description: application/gzip
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--- Begin Message ---Source: gromacs Source-Version: 2021~beta2-2 Done: Nicholas Breen <nbr...@debian.org> We believe that the bug you reported is fixed in the latest version of gromacs, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 973...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Nicholas Breen <nbr...@debian.org> (supplier of updated gromacs package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Sun, 15 Nov 2020 16:13:16 -0800 Source: gromacs Binary: gromacs gromacs-data gromacs-dbgsym gromacs-mpich gromacs-mpich-dbgsym gromacs-openmpi gromacs-openmpi-dbgsym libgromacs-dev libgromacs6 libgromacs6-dbgsym libnblib-dev libnblib0 libnblib0-dbgsym Architecture: source all amd64 Version: 2021~beta2-2 Distribution: experimental Urgency: medium Maintainer: Debichem Team <debichem-de...@lists.alioth.debian.org> Changed-By: Nicholas Breen <nbr...@debian.org> Description: gromacs - Molecular dynamics simulator, with building and analysis tools gromacs-data - GROMACS molecular dynamics sim, data and documentation gromacs-mpich - Molecular dynamics sim, binaries for MPICH parallelization gromacs-openmpi - Molecular dynamics sim, binaries for OpenMPI parallelization libgromacs-dev - GROMACS molecular dynamics sim, development kit libgromacs6 - GROMACS molecular dynamics sim, shared libraries libnblib-dev - GROMACS molecular dynamics sim, NB-LIB development kit libnblib0 - GROMACS molecular dynamics sim, NB-LIB shared libraries Closes: 973639 Changes: gromacs (2021~beta2-2) experimental; urgency=medium . * Split libnblib off into its own package. (Closes: #973639) * Disable building of gmxapi for now - further packaging work needed to make it genuinely useful, with proper Python integration. * d/patches/2021beta-dynamic-linking.patch: Exchange fix in previous release for the proposed patch upstream. * d/patches/2021beta-x32-instructions.patch: A recent commit breaks on x32 systems. Test for those systems and avoid. * Extend ARG_SLOW_TEST even further to 1920 seconds. * Enable hwloc support. 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