Your message dated Thu, 12 Nov 2020 02:38:09 +0000 with message-id <e1kd2uz-000iq3...@fasolo.debian.org> and subject line Bug#973639: fixed in gromacs 2021~beta2-1 has caused the Debian Bug report #973639, regarding libgromacs6: missing Breaks+Replaces: libgromacs5 to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 973639: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=973639 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Package: libgromacs6 Version: 2021~beta1-1 Severity: serious User: debian...@lists.debian.org Usertags: piuparts Hi, during a test with piuparts I noticed your package fails to upgrade from 'sid' to 'experimental'. It installed fine in 'sid', then the upgrade to 'experimental' fails because it tries to overwrite other packages files without declaring a Breaks+Replaces relation. See policy 7.6 at https://www.debian.org/doc/debian-policy/ch-relationships.html#overwriting-files-and-replacing-packages-replaces >From the attached log (scroll to the bottom...): Preparing to unpack .../libgromacs6_2021~beta1-1_amd64.deb ... Unpacking libgromacs6:amd64 (2021~beta1-1) ... dpkg: error processing archive /var/cache/apt/archives/libgromacs6_2021~beta1-1_amd64.deb (--unpack): trying to overwrite '/usr/lib/x86_64-linux-gnu/libgmxapi.so.0.1.0', which is also in package libgromacs5:amd64 2020.4-2 dpkg-deb: error: paste subprocess was killed by signal (Broken pipe) Errors were encountered while processing: /var/cache/apt/archives/libgromacs6_2021~beta1-1_amd64.deb Shared libraries with independent soversions shouldn't be bundled in the same binary package. cheers, Andreas
libgromacs5=2020.4-2_libgromacs6=2021~beta1-1.log.gz
Description: application/gzip
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--- Begin Message ---Source: gromacs Source-Version: 2021~beta2-1 Done: Nicholas Breen <nbr...@debian.org> We believe that the bug you reported is fixed in the latest version of gromacs, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 973...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Nicholas Breen <nbr...@debian.org> (supplier of updated gromacs package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Wed, 11 Nov 2020 16:29:01 -0800 Source: gromacs Architecture: source Version: 2021~beta2-1 Distribution: experimental Urgency: medium Maintainer: Debichem Team <debichem-de...@lists.alioth.debian.org> Changed-By: Nicholas Breen <nbr...@debian.org> Closes: 973639 Changes: gromacs (2021~beta2-1) experimental; urgency=medium . * New upstream beta release. - Remove versioning-for-nblib.patch, incorporated in this release. - libnblib SONAME corrected to 0.2.0. (Closes: #973639) * Set GMX_PREFER_STATIC_LIBS=OFF to avoid statically linking zlib in the MPI targets. Checksums-Sha1: 17bd2164778605583e07f9d19af233a40ef917f1 2648 gromacs_2021~beta2-1.dsc d1611c1bcecdcb3f12f1257be8c145093116fa9a 30133767 gromacs_2021~beta2.orig.tar.gz 984ca3cb8028722128d06c2a50a9313a2f502d28 38144 gromacs_2021~beta2-1.debian.tar.xz da26eae19629d48608b9591c84e0f30b1b12bc1d 9472 gromacs_2021~beta2-1_source.buildinfo Checksums-Sha256: 431ee5f1d02754b98ef9f02d34dc692d69ff0cd01890c1cd2b4ca1bc67a2bac6 2648 gromacs_2021~beta2-1.dsc 9ca2080e72cd87d02e2e72daeb10895b065908de2eea201eac3359fa59f0397e 30133767 gromacs_2021~beta2.orig.tar.gz f3e67a9cc67a811a48a38c0f71d36ba0a05329378c3bb87e6592147dfdbfd859 38144 gromacs_2021~beta2-1.debian.tar.xz ad86c640a88e1e298f8a6aa3f47b4d3e51ad997a8fa4796fc418679ed2863c6a 9472 gromacs_2021~beta2-1_source.buildinfo Files: 0d3cc6d292a6ede6194f19b505c1a5f9 2648 science optional gromacs_2021~beta2-1.dsc 17a487d9e9a6e454ab196545ec330cb8 30133767 science optional gromacs_2021~beta2.orig.tar.gz 86c8cb529eb0588995f52e7b7da24116 38144 science optional gromacs_2021~beta2-1.debian.tar.xz 982de738620a6b238255a4eca4f2c382 9472 science optional gromacs_2021~beta2-1_source.buildinfo -----BEGIN PGP SIGNATURE----- iQJGBAEBCAAwFiEEhD5fph5gYziYdtLl7kr9aexlEI8FAl+smLASHG5icmVlbkBk ZWJpYW4ub3JnAAoJEO5K/WnsZRCPsC8QAIXnCUR9scGezfbVpM5jheXSxehqvyCa YRlDQDbbAg4F6EbDZVRJpElkhp8MYZeDFoqrPKY4nb230ZdUdaP0oj+mLRdJN+JH hM3Kvp5DnfipwGfA93brilWHTHyJGVLj8+CvQ3CCRRvk/JU+mN98bq25p8oG++EO Trg3kaQ8nwkJqQLgAM8H3Bofa91r0AiqAHE9wiZi+eFDc6W3YqNoVkz9MrbyNX0V jBL/1CmI+8Nzw/1l+NxfbuZNKgUWZ6lFmWj7WqKgz3JRtLwSKgwzFD6TaeOzAaBn 8A5ewx8rh5pmzw+ijFWVRW3CS5DGB4KhILujChpqBAKJSwqUiykf5da5Z+bdBWP7 LYgRj2AHdRfH9HqdU3l+SqNUqJwgtptUJ9TjdyvitoZWsHfsmOTfiYHCGuYgjV9G GQ/y9Ey8wi+2GzXrGRNnZv0PuOrRMpwGchZzdBD89n6T3QBtKxPzZ6cimQacI/u+ I35rBlIO/zw+REjZeUjBADccYVxWkOnjOX+HIOHRgWzkFYHVK/dkqJ+UL2hNdlCc 8PxscAACVnCHCoq0sYOu7qalfgTOYnDON0BIpid8OFMgzAVqVFN/APO2nkDrdp47 UvovK5b8KIVtFI13acnSrnGJ4Fj47Nb87FP9PXosDorfiGsEervI29Oi0jqGbv3E 1paU+C2BTkPc =iMq2 -----END PGP SIGNATURE-----
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