Your message dated Sun, 20 Sep 2020 03:11:48 +0000 with message-id <e1kjplu-000iyb...@fasolo.debian.org> and subject line Bug#969608: fixed in ncbi-blast+ 2.10.1-1 has caused the Debian Bug report #969608, regarding ncbi-blast+: regressions on armhf to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 969608: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=969608 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: ncbi-blast+ Version: 2.10.0-1 Severity: grave User: ubuntu-de...@lists.ubuntu.com Usertags: origin-ubuntu groovy Dear maintainers, It appears that ncbi-blast+ 2.10 has regressed on armhf, and is significantly broken. In Ubuntu, all of the autopkgtests triggered by ncbi-blast+ have regressed on this arch, including those of ncbi-blast+ itself: https://autopkgtest.ubuntu.com/packages/n/ncbi-blast+/groovy/armhf https://autopkgtest.ubuntu.com/packages/k/kaptive/groovy/armhf https://autopkgtest.ubuntu.com/packages/r/ruby-crb-blast/groovy/armhf I have reproduced the ncbi-blast+ autopkgtest failure on abel.debian.org, confirming this is not a problem specific to the Debian build. In addition, the python-pyani reverse-dependency fails to build on armhf in both Debian and Ubuntu (the current Debian package was built on the autobuilders against the previous version of ncbi-blast+, but I've reproduced this failure as well in unstable on abel): https://launchpad.net/ubuntu/+source/python-pyani/0.2.10-2/+build/19218920 I think this rises to the level of a grave bug, since armhf is a release architecture and the binaries for this architecture appear to be largely unusable. Either the armhf binaries should be removed or they should be made to work on armhf. -- Steve Langasek Give me a lever long enough and a Free OS Debian Developer to set it on, and I can move the world. Ubuntu Developer https://www.debian.org/ slanga...@ubuntu.com vor...@debian.org
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--- Begin Message ---Source: ncbi-blast+ Source-Version: 2.10.1-1 Done: u...@debian.org (Aaron M. Ucko) We believe that the bug you reported is fixed in the latest version of ncbi-blast+, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 969...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Aaron M. Ucko <u...@debian.org> (supplier of updated ncbi-blast+ package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Sat, 19 Sep 2020 22:45:42 -0400 Source: ncbi-blast+ Architecture: source Version: 2.10.1-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Aaron M. Ucko <u...@debian.org> Closes: 969608 970344 Changes: ncbi-blast+ (2.10.1-1) unstable; urgency=medium . * New upstream release. - Among other changes, "fix tblastn mt issue". (Closes: #970344.) * debian/patches/fix_x86isms (new): Conditionally stub out CCpuFeatures::InstructionSet::InstructionSet, which compiles only on x86. * debian/patches/{hurd_fixes,run_perl_directly}: Rebase. * debian/patches/{reprobuild,support_x32}: Refresh (had fuzz). * debian/patches/support_gcc10: Drop build-system portions, incorporated upstream as of this release. * debian/patches/tune_lmdb_defaults: Rename from tune_32bit_lmdb_defaults; scale down somewhat even on 64-bit platforms to account for potential use of qemu. (Closes: #969608.) Checksums-Sha1: a41a5514ebe1daba89e6315d6fb3e6b033ed6c1b 2304 ncbi-blast+_2.10.1-1.dsc 87dfbceb3e277d159e1b6d2b3574c19d940ba263 58444148 ncbi-blast+_2.10.1.orig.tar.gz 7e5c335094554da43ec093073c20e448c9edb81c 31376 ncbi-blast+_2.10.1-1.debian.tar.xz 27d3a02e28437c86661113623505ecdd72eb4270 8737 ncbi-blast+_2.10.1-1_source.buildinfo Checksums-Sha256: ff499e16c50ea03252c629ca7a4a56fa99c2470bc0782abd2f222cb735f015f6 2304 ncbi-blast+_2.10.1-1.dsc 110729decf082f69b90b058c0cabaea38f771983a564308ae19cb30a68ce7b86 58444148 ncbi-blast+_2.10.1.orig.tar.gz 149af21564f83910b992ca4a3fe96aa7630e54f1c65bad7d97609d02b8b8de25 31376 ncbi-blast+_2.10.1-1.debian.tar.xz 9d772ce62358383b0f540a75e623c08a1d6fda5bf12a6324e4993aec1124b4ee 8737 ncbi-blast+_2.10.1-1_source.buildinfo Files: 3e4fea103ae68a6c6bfe4b2ecc4de197 2304 science optional ncbi-blast+_2.10.1-1.dsc 216cddf560eedc2b8d88bdd1ada1dfd1 58444148 science optional ncbi-blast+_2.10.1.orig.tar.gz d8577d67466b79ab6c1378185a569c0d 31376 science optional ncbi-blast+_2.10.1-1.debian.tar.xz 3cc820b6c75f4aa9404650e0401b7738 8737 science optional ncbi-blast+_2.10.1-1_source.buildinfo -----BEGIN PGP SIGNATURE----- iQIzBAEBCAAdFiEEfDq5z9IwvTDdAJxZHnCRsfFKZKIFAl9mwyUACgkQHnCRsfFK ZKIogBAAsay7B489mXHXb4TEt8/LvXmNS5mC4UPpUSprh8GlZVaCJtjxoYjda5Uq shC6b4yO18JLVxY7QPUk1ZhWjnH+7RNyNPFVpy3HNFpoLBXzEu1vsIhwXKlsJ17s LkrOAtXUj9sXLW9v2LJdN+BeRCCTTIT/UiWG6TJV+dMz0DkFw3aiLnG0QA/3QwUW jtj1AZJaAQUXEa7dna1K8pUiF9kXu2qRlQTtDwrVeXYVCY/2JHZK5V3q5rIURw2b tCPX/iK8QG4uiPIW3AlfwLEY4DsfbcSpudkCHBXYwDkTlm0bATJA7Fpb2+JCtxbg 7xDgaIunER4Jihdq8bsoOgNM0C9ZsiFVjiALuatzlTHnAuC1J73sOfGMUFnaE/2o 04zod7stxNp1ScDkyNZCx23fwTmcJ/8hhRhZpjW7GYwBV6EPy1HTDigmu0B9EOlp +h3Ny0RQb0M5crXOinMKZ20Bkzps2gUTdiHhrYMKzqy0/NveH6V8KbW522bk5pde x1gSBLPqkeail0vcuwVtwZC0WxevwXqYm15Xg+bNVFdKv/LTF+ZRnAYhJjf3Ka9d H/JUQT6uoE0O2NnF15PMt6oM7vOTwymjHDr85HpYWJK28TxGnINkp+wmXYNYKQxD R9ddWMrXgOu2WvrcXRy13V43cgS08JOxVdGogrt/kxt5LGmgAa0= =YpVp -----END PGP SIGNATURE-----
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