Your message dated Mon, 07 Sep 2020 03:18:24 +0000 with message-id <e1kf7fk-000cqd...@fasolo.debian.org> and subject line Bug#969608: fixed in ncbi-blast+ 2.10.0-2 has caused the Debian Bug report #969608, regarding ncbi-blast+: regressions on armhf to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 969608: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=969608 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: ncbi-blast+ Version: 2.10.0-1 Severity: grave User: ubuntu-de...@lists.ubuntu.com Usertags: origin-ubuntu groovy Dear maintainers, It appears that ncbi-blast+ 2.10 has regressed on armhf, and is significantly broken. In Ubuntu, all of the autopkgtests triggered by ncbi-blast+ have regressed on this arch, including those of ncbi-blast+ itself: https://autopkgtest.ubuntu.com/packages/n/ncbi-blast+/groovy/armhf https://autopkgtest.ubuntu.com/packages/k/kaptive/groovy/armhf https://autopkgtest.ubuntu.com/packages/r/ruby-crb-blast/groovy/armhf I have reproduced the ncbi-blast+ autopkgtest failure on abel.debian.org, confirming this is not a problem specific to the Debian build. In addition, the python-pyani reverse-dependency fails to build on armhf in both Debian and Ubuntu (the current Debian package was built on the autobuilders against the previous version of ncbi-blast+, but I've reproduced this failure as well in unstable on abel): https://launchpad.net/ubuntu/+source/python-pyani/0.2.10-2/+build/19218920 I think this rises to the level of a grave bug, since armhf is a release architecture and the binaries for this architecture appear to be largely unusable. Either the armhf binaries should be removed or they should be made to work on armhf. -- Steve Langasek Give me a lever long enough and a Free OS Debian Developer to set it on, and I can move the world. Ubuntu Developer https://www.debian.org/ slanga...@ubuntu.com vor...@debian.org
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--- Begin Message ---Source: ncbi-blast+ Source-Version: 2.10.0-2 Done: u...@debian.org (Aaron M. Ucko) We believe that the bug you reported is fixed in the latest version of ncbi-blast+, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 969...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Aaron M. Ucko <u...@debian.org> (supplier of updated ncbi-blast+ package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Sun, 06 Sep 2020 23:07:37 -0400 Source: ncbi-blast+ Architecture: source Version: 2.10.0-2 Distribution: unstable Urgency: high Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Aaron M. Ucko <u...@debian.org> Closes: 969608 Changes: ncbi-blast+ (2.10.0-2) unstable; urgency=high . * debian/patches/support_gcc10: Additionally tweak ncbifile.cpp to avoid narrowing errors on some platforms (i386, for one). * debian/patches/tune_32bit_lmdb_defaults (new): Conditionalize default map size to avoid allocation failures on 32-bit platforms. (Closes: #969608.) Checksums-Sha1: cf1daec1c03da27c7a86284ea3459e839a759820 2304 ncbi-blast+_2.10.0-2.dsc 621b32e46a395f39f4990c61b1c59325854b58cb 33128 ncbi-blast+_2.10.0-2.debian.tar.xz 1a38add76fb7ecb99cdd0701f0cccd130c09c3e9 8742 ncbi-blast+_2.10.0-2_source.buildinfo Checksums-Sha256: 7bb7a6a1dc7b26c045e514b699dcc6242c568ada533f027558ea6d9d10e7948e 2304 ncbi-blast+_2.10.0-2.dsc 31ef0e84c6568930e525d9632a58a5cf58682be060222712c8b00314548b7809 33128 ncbi-blast+_2.10.0-2.debian.tar.xz d1b613b7b2c4c7ad10fbb93544b31142a820d8294b7ef13d838766d6e5cef35e 8742 ncbi-blast+_2.10.0-2_source.buildinfo Files: e10d6ff2aec763378e392106b33c418c 2304 science optional ncbi-blast+_2.10.0-2.dsc 535725a8a59c1e24d4797ec9cb651454 33128 science optional ncbi-blast+_2.10.0-2.debian.tar.xz fdf51c129cb2893109b84f7c7db4b744 8742 science optional ncbi-blast+_2.10.0-2_source.buildinfo -----BEGIN PGP SIGNATURE----- iQIzBAEBCAAdFiEEfDq5z9IwvTDdAJxZHnCRsfFKZKIFAl9VpU4ACgkQHnCRsfFK ZKLBTQ//dFYrXCEsIysJPiKJOt+2Cs6BE64nEFo71P1A0mJWj5Vj0p60HvghF4Cu KG1OEI+DGh2PNImkAVgtbD/ypFBqN41c8fXsrRpgpcmLs9Z9Lq0BvlPMNLbig4Jz W+VVwagMczVGGprJeIAjLGEkJdWVTp9kSG/aLASyb+rqA9s49R7mVXEEskjf33Fx fUpr3hNTSYYAdY24vWweIVR3Nj++xnbjCi+bVWGjllpX7q0P6AByJdJzQTPSJnIM 2W20bI21E1Tqe4Rr2jwOWZNOHAMQ5KBOBL7WlRP1WFYgGRv08bxc1CEch4uLvJ/T tBkZ9DBnsE8conBJTECkczR0Uy3A5JXPX5pEHVHqltjNYiQR5/7r6C5UhBth/2GY +JcR96r7IlDcwHToeAk0RNqE/TgYPMTdHHSSRFMI1rKnJOubHhW9Y6O6dMQqJVKv gHWrVsiVNvAviiBA3ugD4ngb5CUyz+IjwN3F3N7de6EhE8ndjQPdkvqAxsR6BAXJ xJJUvP/V11svx/onoTyQQ8W1e/pbYVpbWDm7GPdT0pgglT9WaYLt5mcm9Xg/j/V+ 5TA8ecJWkC+h/3aAvdTBaAoFsFfzZTOKn8oN8thyaBA2T269/YvE32/BLg2sF3/c tltrejSEoWxJ8HjwkB0pIVWgl5qqhRHv+nCcTiEZ7JVcbbNLMO0= =ISMx -----END PGP SIGNATURE-----
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