Your message dated Thu, 23 Jul 2020 06:04:13 +0000
with message-id <e1jyukz-0003h1...@fasolo.debian.org>
and subject line Bug#963435: fixed in cdk 1:2.3.134.g1bb9a64587-1
has caused the Debian Bug report #963435,
regarding cdk: FTBFS: [ERROR] Failed to execute goal
org.apache.maven.plugins:maven-compiler-plugin:3.8.1:compile (default-compile)
on project cdk-isomorphism: Compilation failure: Compilation failure:
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
963435: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=963435
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: cdk
Version: 1:2.3-2
Severity: serious
Justification: FTBFS on amd64
Tags: bullseye sid ftbfs
Usertags: ftbfs-20200620 ftbfs-bullseye
Hi,
During a rebuild of all packages in sid, your package failed to build
on amd64.
Relevant part (hopefully):
> debian/rules build
> dh build
> dh_update_autotools_config
> dh_autoreconf
> dh_auto_configure
> mh_patchpoms -plibcdk-java --debian-build --keep-pom-version
> --maven-repo=/<<PKGBUILDDIR>>/debian/maven-repo
> dh_auto_build
> /usr/lib/jvm/default-java/bin/java -noverify -cp
> /usr/share/maven/boot/plexus-classworlds-2.x.jar
> -Dmaven.home=/usr/share/maven
> -Dmaven.multiModuleProjectDirectory=/<<PKGBUILDDIR>>
> -Dclassworlds.conf=/etc/maven/m2-debian.conf
> -Dproperties.file.manual=/<<PKGBUILDDIR>>/debian/maven.properties
> org.codehaus.plexus.classworlds.launcher.Launcher
> -s/etc/maven/settings-debian.xml -Ddebian.dir=/<<PKGBUILDDIR>>/debian
> -Dmaven.repo.local=/<<PKGBUILDDIR>>/debian/maven-repo --batch-mode package
> -DskipTests -Dnotimestamp=true -Dlocale=en_US
> WARNING: An illegal reflective access operation has occurred
> WARNING: Illegal reflective access by
> com.google.inject.internal.cglib.core.$ReflectUtils$1
> (file:/usr/share/maven/lib/guice.jar) to method
> java.lang.ClassLoader.defineClass(java.lang.String,byte[],int,int,java.security.ProtectionDomain)
> WARNING: Please consider reporting this to the maintainers of
> com.google.inject.internal.cglib.core.$ReflectUtils$1
> WARNING: Use --illegal-access=warn to enable warnings of further illegal
> reflective access operations
> WARNING: All illegal access operations will be denied in a future release
> [INFO] Scanning for projects...
> [WARNING] The project org.openscience.cdk:cdk:pom:2.3 uses prerequisites
> which is only intended for maven-plugin projects but not for non maven-plugin
> projects. For such purposes you should use the maven-enforcer-plugin. See
> https://maven.apache.org/enforcer/enforcer-rules/requireMavenVersion.html
> [INFO]
> ------------------------------------------------------------------------
> [INFO] Reactor Build Order:
> [INFO]
> [INFO] cdk
> [pom]
> [INFO] cdk-base
> [pom]
> [INFO] cdk-interfaces
> [jar]
> [INFO] cdk-core
> [jar]
> [INFO] cdk-standard
> [jar]
> [INFO] cdk-atomtype
> [jar]
> [INFO] cdk-valencycheck
> [jar]
> [INFO] cdk-misc
> [pom]
> [INFO] cdk-diff
> [jar]
> [INFO] cdk-data
> [jar]
> [INFO] cdk-silent
> [jar]
> [INFO] cdk-datadebug
> [jar]
> [INFO] cdk-isomorphism
> [jar]
> [INFO] cdk-dict
> [jar]
> [INFO] cdk-storage
> [pom]
> [INFO] cdk-ioformats
> [jar]
> [INFO] cdk-ctab
> [jar]
> [INFO] cdk-io
> [jar]
> [INFO] cdk-tool
> [pom]
> [INFO] cdk-formula
> [jar]
> [INFO] cdk-pdb
> [jar]
> [INFO] cdk-libiocml
> [jar]
> [INFO] cdk-smiles
> [jar]
> [INFO] cdk-extra
> [jar]
> [INFO] cdk-reaction
> [jar]
> [INFO] cdk-smarts
> [jar]
> [INFO] cdk-descriptor
> [pom]
> [INFO] cdk-fingerprint
> [jar]
> [INFO] cdk-cip
> [jar]
> [INFO] cdk-signature
> [jar]
> [INFO] cdk-charges
> [jar]
> [INFO] cdk-forcefield
> [jar]
> [INFO] cdk-sdg
> [jar]
> [INFO] cdk-builder3dtools
> [jar]
> [INFO] cdk-builder3d
> [jar]
> [INFO] cdk-qsar
> [jar]
> [INFO] cdk-display
> [pom]
> [INFO] cdk-render
> [jar]
> [INFO] cdk-inchi
> [jar]
> [INFO] cdk-qsaratomic
> [jar]
> [INFO] cdk-qsarbond
> [jar]
> [INFO] cdk-hash
> [jar]
> [INFO] cdk-fragment
> [jar]
> [INFO] cdk-qsarmolecular
> [jar]
> [INFO] cdk-qsarcml
> [jar]
> [INFO] cdk-qsarprotein
> [jar]
> [INFO] cdk-qsarsubstance
> [jar]
> [INFO] cdk-renderbasic
> [jar]
> [INFO] cdk-renderawt
> [jar]
> [INFO] cdk-renderextra
> [jar]
> [INFO] cdk-control
> [jar]
> [INFO] cdk-log4j
> [jar]
> [INFO] cdk-libiomd
> [jar]
> [INFO] cdk-pdbcml
> [jar]
> [INFO] cdk-group
> [jar]
> [INFO] cdk-pcore
> [jar]
> [INFO] cdk-structgen
> [jar]
> [INFO] cdk-tautomer
> [jar]
> [INFO] cdk-model
> [jar]
> [INFO] cdk-app
> [pom]
> [INFO]
> [INFO] ----------------------< org.openscience.cdk:cdk
> >-----------------------
> [INFO] Building cdk 2.3
> [1/60]
> [INFO] --------------------------------[ pom
> ]---------------------------------
> [INFO]
> [INFO] --- maven-jar-plugin:3.1.2:test-jar (default) @ cdk ---
> [INFO] Skipping packaging of the test-jar
> [INFO]
> [INFO] --------------------< org.openscience.cdk:cdk-base
> >--------------------
> [INFO] Building cdk-base 2.3
> [2/60]
> [INFO] --------------------------------[ pom
> ]---------------------------------
> [INFO]
> [INFO] --- maven-jar-plugin:3.1.2:test-jar (default) @ cdk-base ---
> [INFO] Skipping packaging of the test-jar
> [INFO]
> [INFO] -----------------< org.openscience.cdk:cdk-interfaces
> >-----------------
> [INFO] Building cdk-interfaces 2.3
> [3/60]
> [INFO] --------------------------------[ jar
> ]---------------------------------
> [INFO]
> [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @
> cdk-interfaces ---
> [INFO] Using 'UTF-8' encoding to copy filtered resources.
> [INFO] skip non existing resourceDirectory
> /<<PKGBUILDDIR>>/base/interfaces/src/main/resources
> [INFO]
> [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @
> cdk-interfaces ---
> [INFO] Changes detected - recompiling the module!
> [INFO] Compiling 80 source files to
> /<<PKGBUILDDIR>>/base/interfaces/target/classes
> [INFO]
> [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources)
> @ cdk-interfaces ---
> [INFO] Not copying test resources
> [INFO]
> [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @
> cdk-interfaces ---
> [INFO] Not compiling test sources
> [INFO]
> [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cdk-interfaces
> ---
> [INFO] Tests are skipped.
> [INFO]
> [INFO] --- maven-jar-plugin:3.1.2:jar (default-jar) @ cdk-interfaces ---
> [INFO] Building jar:
> /<<PKGBUILDDIR>>/base/interfaces/target/cdk-interfaces-2.3.jar
> [INFO]
> [INFO] --- maven-jar-plugin:3.1.2:test-jar (default) @ cdk-interfaces ---
> [INFO] Skipping packaging of the test-jar
> [INFO]
> [INFO] --------------------< org.openscience.cdk:cdk-core
> >--------------------
> [INFO] Building cdk-core 2.3
> [4/60]
> [INFO] --------------------------------[ jar
> ]---------------------------------
> [INFO]
> [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @
> cdk-core ---
> [INFO] Using 'UTF-8' encoding to copy filtered resources.
> [INFO] Copying 1 resource
> [INFO] Copying 7 resources
> [INFO]
> [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ cdk-core
> ---
> [INFO] Changes detected - recompiling the module!
> [INFO] Compiling 81 source files to /<<PKGBUILDDIR>>/base/core/target/classes
> [INFO]
> /<<PKGBUILDDIR>>/base/core/src/main/java/org/openscience/cdk/config/AtomTypeFactory.java:
> Some input files use or override a deprecated API.
> [INFO]
> /<<PKGBUILDDIR>>/base/core/src/main/java/org/openscience/cdk/config/AtomTypeFactory.java:
> Recompile with -Xlint:deprecation for details.
> [INFO]
> /<<PKGBUILDDIR>>/base/core/src/main/java/org/openscience/cdk/io/ChemObjectIO.java:
> Some input files use unchecked or unsafe operations.
> [INFO]
> /<<PKGBUILDDIR>>/base/core/src/main/java/org/openscience/cdk/io/ChemObjectIO.java:
> Recompile with -Xlint:unchecked for details.
> [INFO]
> [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources)
> @ cdk-core ---
> [INFO] Not copying test resources
> [INFO]
> [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @
> cdk-core ---
> [INFO] Not compiling test sources
> [INFO]
> [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cdk-core ---
> [INFO] Tests are skipped.
> [INFO]
> [INFO] --- maven-jar-plugin:3.1.2:jar (default-jar) @ cdk-core ---
> [INFO] Building jar: /<<PKGBUILDDIR>>/base/core/target/cdk-core-2.3.jar
> [INFO]
> [INFO] --- maven-jar-plugin:3.1.2:test-jar (default) @ cdk-core ---
> [INFO] Skipping packaging of the test-jar
> [INFO]
> [INFO] ------------------< org.openscience.cdk:cdk-standard
> >------------------
> [INFO] Building cdk-standard 2.3
> [5/60]
> [INFO] --------------------------------[ jar
> ]---------------------------------
> [INFO]
> [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @
> cdk-standard ---
> [INFO] Using 'UTF-8' encoding to copy filtered resources.
> [INFO] Copying 1 resource
> [INFO]
> [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @
> cdk-standard ---
> [INFO] Changes detected - recompiling the module!
> [INFO] Compiling 90 source files to
> /<<PKGBUILDDIR>>/base/standard/target/classes
> [INFO]
> /<<PKGBUILDDIR>>/base/standard/src/main/java/org/openscience/cdk/tools/HOSECodeGenerator.java:
> Some input files use or override a deprecated API.
> [INFO]
> /<<PKGBUILDDIR>>/base/standard/src/main/java/org/openscience/cdk/tools/HOSECodeGenerator.java:
> Recompile with -Xlint:deprecation for details.
> [INFO]
> /<<PKGBUILDDIR>>/base/standard/src/main/java/org/openscience/cdk/geometry/BondTools.java:
> Some input files use unchecked or unsafe operations.
> [INFO]
> /<<PKGBUILDDIR>>/base/standard/src/main/java/org/openscience/cdk/geometry/BondTools.java:
> Recompile with -Xlint:unchecked for details.
> [INFO]
> [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources)
> @ cdk-standard ---
> [INFO] Not copying test resources
> [INFO]
> [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @
> cdk-standard ---
> [INFO] Not compiling test sources
> [INFO]
> [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cdk-standard ---
> [INFO] Tests are skipped.
> [INFO]
> [INFO] --- maven-jar-plugin:3.1.2:jar (default-jar) @ cdk-standard ---
> [INFO] Building jar:
> /<<PKGBUILDDIR>>/base/standard/target/cdk-standard-2.3.jar
> [INFO]
> [INFO] --- maven-jar-plugin:3.1.2:test-jar (default) @ cdk-standard ---
> [INFO] Skipping packaging of the test-jar
> [INFO]
> [INFO] ------------------< org.openscience.cdk:cdk-atomtype
> >------------------
> [INFO] Building cdk-atomtype 2.3
> [6/60]
> [INFO] --------------------------------[ jar
> ]---------------------------------
> [INFO]
> [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @
> cdk-atomtype ---
> [INFO] Using 'UTF-8' encoding to copy filtered resources.
> [INFO] Copying 7 resources
> [INFO]
> [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @
> cdk-atomtype ---
> [INFO] Changes detected - recompiling the module!
> [INFO] Compiling 5 source files to
> /<<PKGBUILDDIR>>/base/atomtype/target/classes
> [INFO]
> /<<PKGBUILDDIR>>/base/atomtype/src/main/java/org/openscience/cdk/config/atomtypes/OWLAtomTypeMappingReader.java:
>
> /<<PKGBUILDDIR>>/base/atomtype/src/main/java/org/openscience/cdk/config/atomtypes/OWLAtomTypeMappingReader.java
> uses or overrides a deprecated API.
> [INFO]
> /<<PKGBUILDDIR>>/base/atomtype/src/main/java/org/openscience/cdk/config/atomtypes/OWLAtomTypeMappingReader.java:
> Recompile with -Xlint:deprecation for details.
> [INFO]
> [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources)
> @ cdk-atomtype ---
> [INFO] Not copying test resources
> [INFO]
> [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @
> cdk-atomtype ---
> [INFO] Not compiling test sources
> [INFO]
> [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cdk-atomtype ---
> [INFO] Tests are skipped.
> [INFO]
> [INFO] --- maven-jar-plugin:3.1.2:jar (default-jar) @ cdk-atomtype ---
> [INFO] Building jar:
> /<<PKGBUILDDIR>>/base/atomtype/target/cdk-atomtype-2.3.jar
> [INFO]
> [INFO] --- maven-jar-plugin:3.1.2:test-jar (default) @ cdk-atomtype ---
> [INFO] Skipping packaging of the test-jar
> [INFO]
> [INFO] ----------------< org.openscience.cdk:cdk-valencycheck
> >----------------
> [INFO] Building cdk-valencycheck 2.3
> [7/60]
> [INFO] --------------------------------[ jar
> ]---------------------------------
> [INFO]
> [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @
> cdk-valencycheck ---
> [INFO] Using 'UTF-8' encoding to copy filtered resources.
> [INFO] skip non existing resourceDirectory
> /<<PKGBUILDDIR>>/base/valencycheck/src/main/resources
> [INFO]
> [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @
> cdk-valencycheck ---
> [INFO] Changes detected - recompiling the module!
> [INFO] Compiling 7 source files to
> /<<PKGBUILDDIR>>/base/valencycheck/target/classes
> [INFO]
> /<<PKGBUILDDIR>>/base/valencycheck/src/main/java/org/openscience/cdk/tools/AtomTypeAwareSaturationChecker.java:
>
> /<<PKGBUILDDIR>>/base/valencycheck/src/main/java/org/openscience/cdk/tools/AtomTypeAwareSaturationChecker.java
> uses or overrides a deprecated API.
> [INFO]
> /<<PKGBUILDDIR>>/base/valencycheck/src/main/java/org/openscience/cdk/tools/AtomTypeAwareSaturationChecker.java:
> Recompile with -Xlint:deprecation for details.
> [INFO]
> [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources)
> @ cdk-valencycheck ---
> [INFO] Not copying test resources
> [INFO]
> [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @
> cdk-valencycheck ---
> [INFO] Not compiling test sources
> [INFO]
> [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @
> cdk-valencycheck ---
> [INFO] Tests are skipped.
> [INFO]
> [INFO] --- maven-jar-plugin:3.1.2:jar (default-jar) @ cdk-valencycheck ---
> [INFO] Building jar:
> /<<PKGBUILDDIR>>/base/valencycheck/target/cdk-valencycheck-2.3.jar
> [INFO]
> [INFO] --- maven-jar-plugin:3.1.2:test-jar (default) @ cdk-valencycheck ---
> [INFO] Skipping packaging of the test-jar
> [INFO]
> [INFO] --------------------< org.openscience.cdk:cdk-misc
> >--------------------
> [INFO] Building cdk-misc 2.3
> [8/60]
> [INFO] --------------------------------[ pom
> ]---------------------------------
> [INFO]
> [INFO] --- maven-jar-plugin:3.1.2:test-jar (default) @ cdk-misc ---
> [INFO] Skipping packaging of the test-jar
> [INFO]
> [INFO] --------------------< org.openscience.cdk:cdk-diff
> >--------------------
> [INFO] Building cdk-diff 2.3
> [9/60]
> [INFO] --------------------------------[ jar
> ]---------------------------------
> [INFO]
> [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @
> cdk-diff ---
> [INFO] Using 'UTF-8' encoding to copy filtered resources.
> [INFO] skip non existing resourceDirectory
> /<<PKGBUILDDIR>>/misc/diff/src/main/resources
> [INFO]
> [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ cdk-diff
> ---
> [INFO] Changes detected - recompiling the module!
> [INFO] Compiling 24 source files to /<<PKGBUILDDIR>>/misc/diff/target/classes
> [INFO]
> /<<PKGBUILDDIR>>/misc/diff/src/main/java/org/openscience/cdk/tools/diff/AtomDiff.java:
>
> /<<PKGBUILDDIR>>/misc/diff/src/main/java/org/openscience/cdk/tools/diff/AtomDiff.java
> uses or overrides a deprecated API.
> [INFO]
> /<<PKGBUILDDIR>>/misc/diff/src/main/java/org/openscience/cdk/tools/diff/AtomDiff.java:
> Recompile with -Xlint:deprecation for details.
> [INFO]
> [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources)
> @ cdk-diff ---
> [INFO] Not copying test resources
> [INFO]
> [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @
> cdk-diff ---
> [INFO] Not compiling test sources
> [INFO]
> [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cdk-diff ---
> [INFO] Tests are skipped.
> [INFO]
> [INFO] --- maven-jar-plugin:3.1.2:jar (default-jar) @ cdk-diff ---
> [INFO] Building jar: /<<PKGBUILDDIR>>/misc/diff/target/cdk-diff-2.3.jar
> [INFO]
> [INFO] --- maven-jar-plugin:3.1.2:test-jar (default) @ cdk-diff ---
> [INFO] Skipping packaging of the test-jar
> [INFO]
> [INFO] --------------------< org.openscience.cdk:cdk-data
> >--------------------
> [INFO] Building cdk-data 2.3
> [10/60]
> [INFO] --------------------------------[ jar
> ]---------------------------------
> [INFO]
> [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @
> cdk-data ---
> [INFO] Using 'UTF-8' encoding to copy filtered resources.
> [INFO] skip non existing resourceDirectory
> /<<PKGBUILDDIR>>/base/data/src/main/resources
> [INFO]
> [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ cdk-data
> ---
> [INFO] Changes detected - recompiling the module!
> [INFO] Compiling 40 source files to /<<PKGBUILDDIR>>/base/data/target/classes
> [INFO]
> /<<PKGBUILDDIR>>/base/data/src/main/java/org/openscience/cdk/Atom.java: Some
> input files use or override a deprecated API.
> [INFO]
> /<<PKGBUILDDIR>>/base/data/src/main/java/org/openscience/cdk/Atom.java:
> Recompile with -Xlint:deprecation for details.
> [INFO]
> /<<PKGBUILDDIR>>/base/data/src/main/java/org/openscience/cdk/AtomContainer.java:
> Some input files use unchecked or unsafe operations.
> [INFO]
> /<<PKGBUILDDIR>>/base/data/src/main/java/org/openscience/cdk/AtomContainer.java:
> Recompile with -Xlint:unchecked for details.
> [INFO]
> [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources)
> @ cdk-data ---
> [INFO] Not copying test resources
> [INFO]
> [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @
> cdk-data ---
> [INFO] Not compiling test sources
> [INFO]
> [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cdk-data ---
> [INFO] Tests are skipped.
> [INFO]
> [INFO] --- maven-jar-plugin:3.1.2:jar (default-jar) @ cdk-data ---
> [INFO] Building jar: /<<PKGBUILDDIR>>/base/data/target/cdk-data-2.3.jar
> [INFO]
> [INFO] --- maven-jar-plugin:3.1.2:test-jar (default) @ cdk-data ---
> [INFO] Skipping packaging of the test-jar
> [INFO]
> [INFO] -------------------< org.openscience.cdk:cdk-silent
> >-------------------
> [INFO] Building cdk-silent 2.3
> [11/60]
> [INFO] --------------------------------[ jar
> ]---------------------------------
> [INFO]
> [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @
> cdk-silent ---
> [INFO] Using 'UTF-8' encoding to copy filtered resources.
> [INFO] skip non existing resourceDirectory
> /<<PKGBUILDDIR>>/base/silent/src/main/resources
> [INFO]
> [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ cdk-silent
> ---
> [INFO] Changes detected - recompiling the module!
> [INFO] Compiling 38 source files to
> /<<PKGBUILDDIR>>/base/silent/target/classes
> [INFO]
> /<<PKGBUILDDIR>>/base/silent/src/main/java/org/openscience/cdk/silent/Bond.java:
> Some input files use or override a deprecated API.
> [INFO]
> /<<PKGBUILDDIR>>/base/silent/src/main/java/org/openscience/cdk/silent/Bond.java:
> Recompile with -Xlint:deprecation for details.
> [INFO]
> /<<PKGBUILDDIR>>/base/silent/src/main/java/org/openscience/cdk/silent/AtomContainer.java:
> Some input files use unchecked or unsafe operations.
> [INFO]
> /<<PKGBUILDDIR>>/base/silent/src/main/java/org/openscience/cdk/silent/AtomContainer.java:
> Recompile with -Xlint:unchecked for details.
> [INFO]
> [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources)
> @ cdk-silent ---
> [INFO] Not copying test resources
> [INFO]
> [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @
> cdk-silent ---
> [INFO] Not compiling test sources
> [INFO]
> [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cdk-silent ---
> [INFO] Tests are skipped.
> [INFO]
> [INFO] --- maven-jar-plugin:3.1.2:jar (default-jar) @ cdk-silent ---
> [INFO] Building jar: /<<PKGBUILDDIR>>/base/silent/target/cdk-silent-2.3.jar
> [INFO]
> [INFO] --- maven-jar-plugin:3.1.2:test-jar (default) @ cdk-silent ---
> [INFO] Skipping packaging of the test-jar
> [INFO]
> [INFO] -----------------< org.openscience.cdk:cdk-datadebug
> >------------------
> [INFO] Building cdk-datadebug 2.3
> [12/60]
> [INFO] --------------------------------[ jar
> ]---------------------------------
> [INFO]
> [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @
> cdk-datadebug ---
> [INFO] Using 'UTF-8' encoding to copy filtered resources.
> [INFO] skip non existing resourceDirectory
> /<<PKGBUILDDIR>>/base/datadebug/src/main/resources
> [INFO]
> [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @
> cdk-datadebug ---
> [INFO] Changes detected - recompiling the module!
> [INFO] Compiling 37 source files to
> /<<PKGBUILDDIR>>/base/datadebug/target/classes
> [INFO]
> /<<PKGBUILDDIR>>/base/datadebug/src/main/java/org/openscience/cdk/debug/DebugAtomContainer.java:
> Some input files use or override a deprecated API.
> [INFO]
> /<<PKGBUILDDIR>>/base/datadebug/src/main/java/org/openscience/cdk/debug/DebugAtomContainer.java:
> Recompile with -Xlint:deprecation for details.
> [INFO]
> [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources)
> @ cdk-datadebug ---
> [INFO] Not copying test resources
> [INFO]
> [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @
> cdk-datadebug ---
> [INFO] Not compiling test sources
> [INFO]
> [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cdk-datadebug
> ---
> [INFO] Tests are skipped.
> [INFO]
> [INFO] --- maven-jar-plugin:3.1.2:jar (default-jar) @ cdk-datadebug ---
> [INFO] Building jar:
> /<<PKGBUILDDIR>>/base/datadebug/target/cdk-datadebug-2.3.jar
> [INFO]
> [INFO] --- maven-jar-plugin:3.1.2:test-jar (default) @ cdk-datadebug ---
> [INFO] Skipping packaging of the test-jar
> [INFO]
> [INFO] ----------------< org.openscience.cdk:cdk-isomorphism
> >-----------------
> [INFO] Building cdk-isomorphism 2.3
> [13/60]
> [INFO] --------------------------------[ jar
> ]---------------------------------
> [INFO]
> [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @
> cdk-isomorphism ---
> [INFO] Using 'UTF-8' encoding to copy filtered resources.
> [INFO] skip non existing resourceDirectory
> /<<PKGBUILDDIR>>/base/isomorphism/src/main/resources
> [INFO]
> [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @
> cdk-isomorphism ---
> [INFO] Changes detected - recompiling the module!
> [INFO] Compiling 32 source files to
> /<<PKGBUILDDIR>>/base/isomorphism/target/classes
> [INFO]
> /<<PKGBUILDDIR>>/base/isomorphism/src/main/java/org/openscience/cdk/isomorphism/matchers/QueryAtom.java:
> Some input files use or override a deprecated API.
> [INFO]
> /<<PKGBUILDDIR>>/base/isomorphism/src/main/java/org/openscience/cdk/isomorphism/matchers/QueryAtom.java:
> Recompile with -Xlint:deprecation for details.
> [INFO]
> /<<PKGBUILDDIR>>/base/isomorphism/src/main/java/org/openscience/cdk/isomorphism/matchers/QueryAtomContainer.java:
> Some input files use unchecked or unsafe operations.
> [INFO]
> /<<PKGBUILDDIR>>/base/isomorphism/src/main/java/org/openscience/cdk/isomorphism/matchers/QueryAtomContainer.java:
> Recompile with -Xlint:unchecked for details.
> [INFO] -------------------------------------------------------------
> [ERROR] COMPILATION ERROR :
> [INFO] -------------------------------------------------------------
> [ERROR]
> /<<PKGBUILDDIR>>/base/isomorphism/src/main/java/org/openscience/cdk/isomorphism/QueryStereoFilter.java:[59,7]
> org.openscience.cdk.isomorphism.QueryStereoFilter is not abstract and does
> not override abstract method test(int[]) in java.util.function.Predicate
> [ERROR]
> /<<PKGBUILDDIR>>/base/isomorphism/src/main/java/org/openscience/cdk/isomorphism/UniqueBondMatches.java:[47,7]
> org.openscience.cdk.isomorphism.UniqueBondMatches is not abstract and does
> not override abstract method test(int[]) in java.util.function.Predicate
> [ERROR]
> /<<PKGBUILDDIR>>/base/isomorphism/src/main/java/org/openscience/cdk/isomorphism/StereoMatch.java:[58,7]
> org.openscience.cdk.isomorphism.StereoMatch is not abstract and does not
> override abstract method test(int[]) in java.util.function.Predicate
> [ERROR]
> /<<PKGBUILDDIR>>/base/isomorphism/src/main/java/org/openscience/cdk/isomorphism/ComponentFilter.java:[61,7]
> org.openscience.cdk.isomorphism.ComponentFilter is not abstract and does not
> override abstract method test(int[]) in java.util.function.Predicate
> [ERROR]
> /<<PKGBUILDDIR>>/base/isomorphism/src/main/java/org/openscience/cdk/isomorphism/AtomMapFilter.java:[69,7]
> org.openscience.cdk.isomorphism.AtomMapFilter is not abstract and does not
> override abstract method test(int[]) in java.util.function.Predicate
> [ERROR]
> /<<PKGBUILDDIR>>/base/isomorphism/src/main/java/org/openscience/cdk/isomorphism/UniqueAtomMatches.java:[47,7]
> org.openscience.cdk.isomorphism.UniqueAtomMatches is not abstract and does
> not override abstract method test(int[]) in java.util.function.Predicate
> [INFO] 6 errors
> [INFO] -------------------------------------------------------------
> [INFO]
> ------------------------------------------------------------------------
> [INFO] Reactor Summary for cdk 2.3:
> [INFO]
> [INFO] cdk ................................................ SUCCESS [ 0.292
> s]
> [INFO] cdk-base ........................................... SUCCESS [ 0.004
> s]
> [INFO] cdk-interfaces ..................................... SUCCESS [ 1.235
> s]
> [INFO] cdk-core ........................................... SUCCESS [ 1.513
> s]
> [INFO] cdk-standard ....................................... SUCCESS [ 0.954
> s]
> [INFO] cdk-atomtype ....................................... SUCCESS [ 0.110
> s]
> [INFO] cdk-valencycheck ................................... SUCCESS [ 0.117
> s]
> [INFO] cdk-misc ........................................... SUCCESS [ 0.002
> s]
> [INFO] cdk-diff ........................................... SUCCESS [ 0.135
> s]
> [INFO] cdk-data ........................................... SUCCESS [ 0.517
> s]
> [INFO] cdk-silent ......................................... SUCCESS [ 0.444
> s]
> [INFO] cdk-datadebug ...................................... SUCCESS [ 0.545
> s]
> [INFO] cdk-isomorphism .................................... FAILURE [ 0.191
> s]
> [INFO] cdk-dict ........................................... SKIPPED
> [INFO] cdk-storage ........................................ SKIPPED
> [INFO] cdk-ioformats ...................................... SKIPPED
> [INFO] cdk-ctab ........................................... SKIPPED
> [INFO] cdk-io ............................................. SKIPPED
> [INFO] cdk-tool ........................................... SKIPPED
> [INFO] cdk-formula ........................................ SKIPPED
> [INFO] cdk-pdb ............................................ SKIPPED
> [INFO] cdk-libiocml ....................................... SKIPPED
> [INFO] cdk-smiles ......................................... SKIPPED
> [INFO] cdk-extra .......................................... SKIPPED
> [INFO] cdk-reaction ....................................... SKIPPED
> [INFO] cdk-smarts ......................................... SKIPPED
> [INFO] cdk-descriptor ..................................... SKIPPED
> [INFO] cdk-fingerprint .................................... SKIPPED
> [INFO] cdk-cip ............................................ SKIPPED
> [INFO] cdk-signature ...................................... SKIPPED
> [INFO] cdk-charges ........................................ SKIPPED
> [INFO] cdk-forcefield ..................................... SKIPPED
> [INFO] cdk-sdg ............................................ SKIPPED
> [INFO] cdk-builder3dtools ................................. SKIPPED
> [INFO] cdk-builder3d ...................................... SKIPPED
> [INFO] cdk-qsar ........................................... SKIPPED
> [INFO] cdk-display ........................................ SKIPPED
> [INFO] cdk-render ......................................... SKIPPED
> [INFO] cdk-inchi .......................................... SKIPPED
> [INFO] cdk-qsaratomic ..................................... SKIPPED
> [INFO] cdk-qsarbond ....................................... SKIPPED
> [INFO] cdk-hash ........................................... SKIPPED
> [INFO] cdk-fragment ....................................... SKIPPED
> [INFO] cdk-qsarmolecular .................................. SKIPPED
> [INFO] cdk-qsarcml ........................................ SKIPPED
> [INFO] cdk-qsarprotein .................................... SKIPPED
> [INFO] cdk-qsarsubstance .................................. SKIPPED
> [INFO] cdk-renderbasic .................................... SKIPPED
> [INFO] cdk-renderawt ...................................... SKIPPED
> [INFO] cdk-renderextra .................................... SKIPPED
> [INFO] cdk-control ........................................ SKIPPED
> [INFO] cdk-log4j .......................................... SKIPPED
> [INFO] cdk-libiomd ........................................ SKIPPED
> [INFO] cdk-pdbcml ......................................... SKIPPED
> [INFO] cdk-group .......................................... SKIPPED
> [INFO] cdk-pcore .......................................... SKIPPED
> [INFO] cdk-structgen ...................................... SKIPPED
> [INFO] cdk-tautomer ....................................... SKIPPED
> [INFO] cdk-model .......................................... SKIPPED
> [INFO] cdk-app ............................................ SKIPPED
> [INFO]
> ------------------------------------------------------------------------
> [INFO] BUILD FAILURE
> [INFO]
> ------------------------------------------------------------------------
> [INFO] Total time: 6.408 s
> [INFO] Finished at: 2020-06-21T07:29:04Z
> [INFO]
> ------------------------------------------------------------------------
> [ERROR] Failed to execute goal
> org.apache.maven.plugins:maven-compiler-plugin:3.8.1:compile
> (default-compile) on project cdk-isomorphism: Compilation failure:
> Compilation failure:
> [ERROR]
> /<<PKGBUILDDIR>>/base/isomorphism/src/main/java/org/openscience/cdk/isomorphism/QueryStereoFilter.java:[59,7]
> org.openscience.cdk.isomorphism.QueryStereoFilter is not abstract and does
> not override abstract method test(int[]) in java.util.function.Predicate
> [ERROR]
> /<<PKGBUILDDIR>>/base/isomorphism/src/main/java/org/openscience/cdk/isomorphism/UniqueBondMatches.java:[47,7]
> org.openscience.cdk.isomorphism.UniqueBondMatches is not abstract and does
> not override abstract method test(int[]) in java.util.function.Predicate
> [ERROR]
> /<<PKGBUILDDIR>>/base/isomorphism/src/main/java/org/openscience/cdk/isomorphism/StereoMatch.java:[58,7]
> org.openscience.cdk.isomorphism.StereoMatch is not abstract and does not
> override abstract method test(int[]) in java.util.function.Predicate
> [ERROR]
> /<<PKGBUILDDIR>>/base/isomorphism/src/main/java/org/openscience/cdk/isomorphism/ComponentFilter.java:[61,7]
> org.openscience.cdk.isomorphism.ComponentFilter is not abstract and does not
> override abstract method test(int[]) in java.util.function.Predicate
> [ERROR]
> /<<PKGBUILDDIR>>/base/isomorphism/src/main/java/org/openscience/cdk/isomorphism/AtomMapFilter.java:[69,7]
> org.openscience.cdk.isomorphism.AtomMapFilter is not abstract and does not
> override abstract method test(int[]) in java.util.function.Predicate
> [ERROR]
> /<<PKGBUILDDIR>>/base/isomorphism/src/main/java/org/openscience/cdk/isomorphism/UniqueAtomMatches.java:[47,7]
> org.openscience.cdk.isomorphism.UniqueAtomMatches is not abstract and does
> not override abstract method test(int[]) in java.util.function.Predicate
> [ERROR] -> [Help 1]
> [ERROR]
> [ERROR] To see the full stack trace of the errors, re-run Maven with the -e
> switch.
> [ERROR] Re-run Maven using the -X switch to enable full debug logging.
> [ERROR]
> [ERROR] For more information about the errors and possible solutions, please
> read the following articles:
> [ERROR] [Help 1]
> http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
> [ERROR]
> [ERROR] After correcting the problems, you can resume the build with the
> command
> [ERROR] mvn <args> -rf :cdk-isomorphism
> dh_auto_build: error: /usr/lib/jvm/default-java/bin/java -noverify -cp
> /usr/share/maven/boot/plexus-classworlds-2.x.jar
> -Dmaven.home=/usr/share/maven
> -Dmaven.multiModuleProjectDirectory=/<<PKGBUILDDIR>>
> -Dclassworlds.conf=/etc/maven/m2-debian.conf
> -Dproperties.file.manual=/<<PKGBUILDDIR>>/debian/maven.properties
> org.codehaus.plexus.classworlds.launcher.Launcher
> -s/etc/maven/settings-debian.xml -Ddebian.dir=/<<PKGBUILDDIR>>/debian
> -Dmaven.repo.local=/<<PKGBUILDDIR>>/debian/maven-repo --batch-mode package
> -DskipTests -Dnotimestamp=true -Dlocale=en_US returned exit code 1
> make: *** [debian/rules:4: build] Error 25
The full build log is available from:
http://qa-logs.debian.net/2020/06/20/cdk_2.3-2_unstable.log
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures.
--- End Message ---
--- Begin Message ---
Source: cdk
Source-Version: 1:2.3.134.g1bb9a64587-1
Done: Andrius Merkys <mer...@debian.org>
We believe that the bug you reported is fixed in the latest version of
cdk, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 963...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andrius Merkys <mer...@debian.org> (supplier of updated cdk package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Thu, 23 Jul 2020 01:47:41 -0400
Source: cdk
Architecture: source
Version: 1:2.3.134.g1bb9a64587-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Java Maintainers
<pkg-java-maintain...@lists.alioth.debian.org>
Changed-By: Andrius Merkys <mer...@debian.org>
Closes: 956843 963435
Changes:
cdk (1:2.3.134.g1bb9a64587-1) unstable; urgency=medium
.
* New upstream version 2.3.134.g1bb9a64587 (Closes: #963435)
* Updating copyright years
* New dependency on libhamcrest-java
* Packaging cdk-depict (Closes: #956843)
* Depending on liblog4j2-java instead of liblog4j1.2-java
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cdk_2.3.134.g1bb9a64587.orig.tar.xz
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cdk_2.3.134.g1bb9a64587-1.debian.tar.xz
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cdk_2.3.134.g1bb9a64587-1_source.buildinfo
Checksums-Sha256:
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Files:
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cdk_2.3.134.g1bb9a64587-1.dsc
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cdk_2.3.134.g1bb9a64587.orig.tar.xz
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cdk_2.3.134.g1bb9a64587-1.debian.tar.xz
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--- End Message ---
