Source: cdk Version: 1:2.3-2 Severity: serious Justification: FTBFS on amd64 Tags: bullseye sid ftbfs Usertags: ftbfs-20200620 ftbfs-bullseye
Hi, During a rebuild of all packages in sid, your package failed to build on amd64. Relevant part (hopefully): > debian/rules build > dh build > dh_update_autotools_config > dh_autoreconf > dh_auto_configure > mh_patchpoms -plibcdk-java --debian-build --keep-pom-version > --maven-repo=/<<PKGBUILDDIR>>/debian/maven-repo > dh_auto_build > /usr/lib/jvm/default-java/bin/java -noverify -cp > /usr/share/maven/boot/plexus-classworlds-2.x.jar > -Dmaven.home=/usr/share/maven > -Dmaven.multiModuleProjectDirectory=/<<PKGBUILDDIR>> > -Dclassworlds.conf=/etc/maven/m2-debian.conf > -Dproperties.file.manual=/<<PKGBUILDDIR>>/debian/maven.properties > org.codehaus.plexus.classworlds.launcher.Launcher > -s/etc/maven/settings-debian.xml -Ddebian.dir=/<<PKGBUILDDIR>>/debian > -Dmaven.repo.local=/<<PKGBUILDDIR>>/debian/maven-repo --batch-mode package > -DskipTests -Dnotimestamp=true -Dlocale=en_US > WARNING: An illegal reflective access operation has occurred > WARNING: Illegal reflective access by > com.google.inject.internal.cglib.core.$ReflectUtils$1 > (file:/usr/share/maven/lib/guice.jar) to method > java.lang.ClassLoader.defineClass(java.lang.String,byte[],int,int,java.security.ProtectionDomain) > WARNING: Please consider reporting this to the maintainers of > com.google.inject.internal.cglib.core.$ReflectUtils$1 > WARNING: Use --illegal-access=warn to enable warnings of further illegal > reflective access operations > WARNING: All illegal access operations will be denied in a future release > [INFO] Scanning for projects... > [WARNING] The project org.openscience.cdk:cdk:pom:2.3 uses prerequisites > which is only intended for maven-plugin projects but not for non maven-plugin > projects. For such purposes you should use the maven-enforcer-plugin. See > https://maven.apache.org/enforcer/enforcer-rules/requireMavenVersion.html > [INFO] > ------------------------------------------------------------------------ > [INFO] Reactor Build Order: > [INFO] > [INFO] cdk > [pom] > [INFO] cdk-base > [pom] > [INFO] cdk-interfaces > [jar] > [INFO] cdk-core > [jar] > [INFO] cdk-standard > [jar] > [INFO] cdk-atomtype > [jar] > [INFO] cdk-valencycheck > [jar] > [INFO] cdk-misc > [pom] > [INFO] cdk-diff > [jar] > [INFO] cdk-data > [jar] > [INFO] cdk-silent > [jar] > [INFO] cdk-datadebug > [jar] > [INFO] cdk-isomorphism > [jar] > [INFO] cdk-dict > [jar] > [INFO] cdk-storage > [pom] > [INFO] cdk-ioformats > [jar] > [INFO] cdk-ctab > [jar] > [INFO] cdk-io > [jar] > [INFO] cdk-tool > [pom] > [INFO] cdk-formula > [jar] > [INFO] cdk-pdb > [jar] > [INFO] cdk-libiocml > [jar] > [INFO] cdk-smiles > [jar] > [INFO] cdk-extra > [jar] > [INFO] cdk-reaction > [jar] > [INFO] cdk-smarts > [jar] > [INFO] cdk-descriptor > [pom] > [INFO] cdk-fingerprint > [jar] > [INFO] cdk-cip > [jar] > [INFO] cdk-signature > [jar] > [INFO] cdk-charges > [jar] > [INFO] cdk-forcefield > [jar] > [INFO] cdk-sdg > [jar] > [INFO] cdk-builder3dtools > [jar] > [INFO] cdk-builder3d > [jar] > [INFO] cdk-qsar > [jar] > [INFO] cdk-display > [pom] > [INFO] cdk-render > [jar] > [INFO] cdk-inchi > [jar] > [INFO] cdk-qsaratomic > [jar] > [INFO] cdk-qsarbond > [jar] > [INFO] cdk-hash > [jar] > [INFO] cdk-fragment > [jar] > [INFO] cdk-qsarmolecular > [jar] > [INFO] cdk-qsarcml > [jar] > [INFO] cdk-qsarprotein > [jar] > [INFO] cdk-qsarsubstance > [jar] > [INFO] cdk-renderbasic > [jar] > [INFO] cdk-renderawt > [jar] > [INFO] cdk-renderextra > [jar] > [INFO] cdk-control > [jar] > [INFO] cdk-log4j > [jar] > [INFO] cdk-libiomd > [jar] > [INFO] cdk-pdbcml > [jar] > [INFO] cdk-group > [jar] > [INFO] cdk-pcore > [jar] > [INFO] cdk-structgen > [jar] > [INFO] cdk-tautomer > [jar] > [INFO] cdk-model > [jar] > [INFO] cdk-app > [pom] > [INFO] > [INFO] ----------------------< org.openscience.cdk:cdk > >----------------------- > [INFO] Building cdk 2.3 > [1/60] > [INFO] --------------------------------[ pom > ]--------------------------------- > [INFO] > [INFO] --- maven-jar-plugin:3.1.2:test-jar (default) @ cdk --- > [INFO] Skipping packaging of the test-jar > [INFO] > [INFO] --------------------< org.openscience.cdk:cdk-base > >-------------------- > [INFO] Building cdk-base 2.3 > [2/60] > [INFO] --------------------------------[ pom > ]--------------------------------- > [INFO] > [INFO] --- maven-jar-plugin:3.1.2:test-jar (default) @ cdk-base --- > [INFO] Skipping packaging of the test-jar > [INFO] > [INFO] -----------------< org.openscience.cdk:cdk-interfaces > >----------------- > [INFO] Building cdk-interfaces 2.3 > [3/60] > [INFO] --------------------------------[ jar > ]--------------------------------- > [INFO] > [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ > cdk-interfaces --- > [INFO] Using 'UTF-8' encoding to copy filtered resources. > [INFO] skip non existing resourceDirectory > /<<PKGBUILDDIR>>/base/interfaces/src/main/resources > [INFO] > [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ > cdk-interfaces --- > [INFO] Changes detected - recompiling the module! > [INFO] Compiling 80 source files to > /<<PKGBUILDDIR>>/base/interfaces/target/classes > [INFO] > [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) > @ cdk-interfaces --- > [INFO] Not copying test resources > [INFO] > [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ > cdk-interfaces --- > [INFO] Not compiling test sources > [INFO] > [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cdk-interfaces > --- > [INFO] Tests are skipped. > [INFO] > [INFO] --- maven-jar-plugin:3.1.2:jar (default-jar) @ cdk-interfaces --- > [INFO] Building jar: > /<<PKGBUILDDIR>>/base/interfaces/target/cdk-interfaces-2.3.jar > [INFO] > [INFO] --- maven-jar-plugin:3.1.2:test-jar (default) @ cdk-interfaces --- > [INFO] Skipping packaging of the test-jar > [INFO] > [INFO] --------------------< org.openscience.cdk:cdk-core > >-------------------- > [INFO] Building cdk-core 2.3 > [4/60] > [INFO] --------------------------------[ jar > ]--------------------------------- > [INFO] > [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ > cdk-core --- > [INFO] Using 'UTF-8' encoding to copy filtered resources. > [INFO] Copying 1 resource > [INFO] Copying 7 resources > [INFO] > [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ cdk-core > --- > [INFO] Changes detected - recompiling the module! > [INFO] Compiling 81 source files to /<<PKGBUILDDIR>>/base/core/target/classes > [INFO] > /<<PKGBUILDDIR>>/base/core/src/main/java/org/openscience/cdk/config/AtomTypeFactory.java: > Some input files use or override a deprecated API. > [INFO] > /<<PKGBUILDDIR>>/base/core/src/main/java/org/openscience/cdk/config/AtomTypeFactory.java: > Recompile with -Xlint:deprecation for details. > [INFO] > /<<PKGBUILDDIR>>/base/core/src/main/java/org/openscience/cdk/io/ChemObjectIO.java: > Some input files use unchecked or unsafe operations. > [INFO] > /<<PKGBUILDDIR>>/base/core/src/main/java/org/openscience/cdk/io/ChemObjectIO.java: > Recompile with -Xlint:unchecked for details. > [INFO] > [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) > @ cdk-core --- > [INFO] Not copying test resources > [INFO] > [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ > cdk-core --- > [INFO] Not compiling test sources > [INFO] > [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cdk-core --- > [INFO] Tests are skipped. > [INFO] > [INFO] --- maven-jar-plugin:3.1.2:jar (default-jar) @ cdk-core --- > [INFO] Building jar: /<<PKGBUILDDIR>>/base/core/target/cdk-core-2.3.jar > [INFO] > [INFO] --- maven-jar-plugin:3.1.2:test-jar (default) @ cdk-core --- > [INFO] Skipping packaging of the test-jar > [INFO] > [INFO] ------------------< org.openscience.cdk:cdk-standard > >------------------ > [INFO] Building cdk-standard 2.3 > [5/60] > [INFO] --------------------------------[ jar > ]--------------------------------- > [INFO] > [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ > cdk-standard --- > [INFO] Using 'UTF-8' encoding to copy filtered resources. > [INFO] Copying 1 resource > [INFO] > [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ > cdk-standard --- > [INFO] Changes detected - recompiling the module! > [INFO] Compiling 90 source files to > /<<PKGBUILDDIR>>/base/standard/target/classes > [INFO] > /<<PKGBUILDDIR>>/base/standard/src/main/java/org/openscience/cdk/tools/HOSECodeGenerator.java: > Some input files use or override a deprecated API. > [INFO] > /<<PKGBUILDDIR>>/base/standard/src/main/java/org/openscience/cdk/tools/HOSECodeGenerator.java: > Recompile with -Xlint:deprecation for details. > [INFO] > /<<PKGBUILDDIR>>/base/standard/src/main/java/org/openscience/cdk/geometry/BondTools.java: > Some input files use unchecked or unsafe operations. > [INFO] > /<<PKGBUILDDIR>>/base/standard/src/main/java/org/openscience/cdk/geometry/BondTools.java: > Recompile with -Xlint:unchecked for details. > [INFO] > [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) > @ cdk-standard --- > [INFO] Not copying test resources > [INFO] > [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ > cdk-standard --- > [INFO] Not compiling test sources > [INFO] > [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cdk-standard --- > [INFO] Tests are skipped. > [INFO] > [INFO] --- maven-jar-plugin:3.1.2:jar (default-jar) @ cdk-standard --- > [INFO] Building jar: > /<<PKGBUILDDIR>>/base/standard/target/cdk-standard-2.3.jar > [INFO] > [INFO] --- maven-jar-plugin:3.1.2:test-jar (default) @ cdk-standard --- > [INFO] Skipping packaging of the test-jar > [INFO] > [INFO] ------------------< org.openscience.cdk:cdk-atomtype > >------------------ > [INFO] Building cdk-atomtype 2.3 > [6/60] > [INFO] --------------------------------[ jar > ]--------------------------------- > [INFO] > [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ > cdk-atomtype --- > [INFO] Using 'UTF-8' encoding to copy filtered resources. > [INFO] Copying 7 resources > [INFO] > [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ > cdk-atomtype --- > [INFO] Changes detected - recompiling the module! > [INFO] Compiling 5 source files to > /<<PKGBUILDDIR>>/base/atomtype/target/classes > [INFO] > /<<PKGBUILDDIR>>/base/atomtype/src/main/java/org/openscience/cdk/config/atomtypes/OWLAtomTypeMappingReader.java: > > /<<PKGBUILDDIR>>/base/atomtype/src/main/java/org/openscience/cdk/config/atomtypes/OWLAtomTypeMappingReader.java > uses or overrides a deprecated API. > [INFO] > /<<PKGBUILDDIR>>/base/atomtype/src/main/java/org/openscience/cdk/config/atomtypes/OWLAtomTypeMappingReader.java: > Recompile with -Xlint:deprecation for details. > [INFO] > [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) > @ cdk-atomtype --- > [INFO] Not copying test resources > [INFO] > [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ > cdk-atomtype --- > [INFO] Not compiling test sources > [INFO] > [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cdk-atomtype --- > [INFO] Tests are skipped. > [INFO] > [INFO] --- maven-jar-plugin:3.1.2:jar (default-jar) @ cdk-atomtype --- > [INFO] Building jar: > /<<PKGBUILDDIR>>/base/atomtype/target/cdk-atomtype-2.3.jar > [INFO] > [INFO] --- maven-jar-plugin:3.1.2:test-jar (default) @ cdk-atomtype --- > [INFO] Skipping packaging of the test-jar > [INFO] > [INFO] ----------------< org.openscience.cdk:cdk-valencycheck > >---------------- > [INFO] Building cdk-valencycheck 2.3 > [7/60] > [INFO] --------------------------------[ jar > ]--------------------------------- > [INFO] > [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ > cdk-valencycheck --- > [INFO] Using 'UTF-8' encoding to copy filtered resources. > [INFO] skip non existing resourceDirectory > /<<PKGBUILDDIR>>/base/valencycheck/src/main/resources > [INFO] > [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ > cdk-valencycheck --- > [INFO] Changes detected - recompiling the module! > [INFO] Compiling 7 source files to > /<<PKGBUILDDIR>>/base/valencycheck/target/classes > [INFO] > /<<PKGBUILDDIR>>/base/valencycheck/src/main/java/org/openscience/cdk/tools/AtomTypeAwareSaturationChecker.java: > > /<<PKGBUILDDIR>>/base/valencycheck/src/main/java/org/openscience/cdk/tools/AtomTypeAwareSaturationChecker.java > uses or overrides a deprecated API. > [INFO] > /<<PKGBUILDDIR>>/base/valencycheck/src/main/java/org/openscience/cdk/tools/AtomTypeAwareSaturationChecker.java: > Recompile with -Xlint:deprecation for details. > [INFO] > [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) > @ cdk-valencycheck --- > [INFO] Not copying test resources > [INFO] > [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ > cdk-valencycheck --- > [INFO] Not compiling test sources > [INFO] > [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ > cdk-valencycheck --- > [INFO] Tests are skipped. > [INFO] > [INFO] --- maven-jar-plugin:3.1.2:jar (default-jar) @ cdk-valencycheck --- > [INFO] Building jar: > /<<PKGBUILDDIR>>/base/valencycheck/target/cdk-valencycheck-2.3.jar > [INFO] > [INFO] --- maven-jar-plugin:3.1.2:test-jar (default) @ cdk-valencycheck --- > [INFO] Skipping packaging of the test-jar > [INFO] > [INFO] --------------------< org.openscience.cdk:cdk-misc > >-------------------- > [INFO] Building cdk-misc 2.3 > [8/60] > [INFO] --------------------------------[ pom > ]--------------------------------- > [INFO] > [INFO] --- maven-jar-plugin:3.1.2:test-jar (default) @ cdk-misc --- > [INFO] Skipping packaging of the test-jar > [INFO] > [INFO] --------------------< org.openscience.cdk:cdk-diff > >-------------------- > [INFO] Building cdk-diff 2.3 > [9/60] > [INFO] --------------------------------[ jar > ]--------------------------------- > [INFO] > [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ > cdk-diff --- > [INFO] Using 'UTF-8' encoding to copy filtered resources. > [INFO] skip non existing resourceDirectory > /<<PKGBUILDDIR>>/misc/diff/src/main/resources > [INFO] > [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ cdk-diff > --- > [INFO] Changes detected - recompiling the module! > [INFO] Compiling 24 source files to /<<PKGBUILDDIR>>/misc/diff/target/classes > [INFO] > /<<PKGBUILDDIR>>/misc/diff/src/main/java/org/openscience/cdk/tools/diff/AtomDiff.java: > > /<<PKGBUILDDIR>>/misc/diff/src/main/java/org/openscience/cdk/tools/diff/AtomDiff.java > uses or overrides a deprecated API. > [INFO] > /<<PKGBUILDDIR>>/misc/diff/src/main/java/org/openscience/cdk/tools/diff/AtomDiff.java: > Recompile with -Xlint:deprecation for details. > [INFO] > [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) > @ cdk-diff --- > [INFO] Not copying test resources > [INFO] > [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ > cdk-diff --- > [INFO] Not compiling test sources > [INFO] > [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cdk-diff --- > [INFO] Tests are skipped. > [INFO] > [INFO] --- maven-jar-plugin:3.1.2:jar (default-jar) @ cdk-diff --- > [INFO] Building jar: /<<PKGBUILDDIR>>/misc/diff/target/cdk-diff-2.3.jar > [INFO] > [INFO] --- maven-jar-plugin:3.1.2:test-jar (default) @ cdk-diff --- > [INFO] Skipping packaging of the test-jar > [INFO] > [INFO] --------------------< org.openscience.cdk:cdk-data > >-------------------- > [INFO] Building cdk-data 2.3 > [10/60] > [INFO] --------------------------------[ jar > ]--------------------------------- > [INFO] > [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ > cdk-data --- > [INFO] Using 'UTF-8' encoding to copy filtered resources. > [INFO] skip non existing resourceDirectory > /<<PKGBUILDDIR>>/base/data/src/main/resources > [INFO] > [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ cdk-data > --- > [INFO] Changes detected - recompiling the module! > [INFO] Compiling 40 source files to /<<PKGBUILDDIR>>/base/data/target/classes > [INFO] > /<<PKGBUILDDIR>>/base/data/src/main/java/org/openscience/cdk/Atom.java: Some > input files use or override a deprecated API. > [INFO] > /<<PKGBUILDDIR>>/base/data/src/main/java/org/openscience/cdk/Atom.java: > Recompile with -Xlint:deprecation for details. > [INFO] > /<<PKGBUILDDIR>>/base/data/src/main/java/org/openscience/cdk/AtomContainer.java: > Some input files use unchecked or unsafe operations. > [INFO] > /<<PKGBUILDDIR>>/base/data/src/main/java/org/openscience/cdk/AtomContainer.java: > Recompile with -Xlint:unchecked for details. > [INFO] > [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) > @ cdk-data --- > [INFO] Not copying test resources > [INFO] > [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ > cdk-data --- > [INFO] Not compiling test sources > [INFO] > [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cdk-data --- > [INFO] Tests are skipped. > [INFO] > [INFO] --- maven-jar-plugin:3.1.2:jar (default-jar) @ cdk-data --- > [INFO] Building jar: /<<PKGBUILDDIR>>/base/data/target/cdk-data-2.3.jar > [INFO] > [INFO] --- maven-jar-plugin:3.1.2:test-jar (default) @ cdk-data --- > [INFO] Skipping packaging of the test-jar > [INFO] > [INFO] -------------------< org.openscience.cdk:cdk-silent > >------------------- > [INFO] Building cdk-silent 2.3 > [11/60] > [INFO] --------------------------------[ jar > ]--------------------------------- > [INFO] > [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ > cdk-silent --- > [INFO] Using 'UTF-8' encoding to copy filtered resources. > [INFO] skip non existing resourceDirectory > /<<PKGBUILDDIR>>/base/silent/src/main/resources > [INFO] > [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ cdk-silent > --- > [INFO] Changes detected - recompiling the module! > [INFO] Compiling 38 source files to > /<<PKGBUILDDIR>>/base/silent/target/classes > [INFO] > /<<PKGBUILDDIR>>/base/silent/src/main/java/org/openscience/cdk/silent/Bond.java: > Some input files use or override a deprecated API. > [INFO] > /<<PKGBUILDDIR>>/base/silent/src/main/java/org/openscience/cdk/silent/Bond.java: > Recompile with -Xlint:deprecation for details. > [INFO] > /<<PKGBUILDDIR>>/base/silent/src/main/java/org/openscience/cdk/silent/AtomContainer.java: > Some input files use unchecked or unsafe operations. > [INFO] > /<<PKGBUILDDIR>>/base/silent/src/main/java/org/openscience/cdk/silent/AtomContainer.java: > Recompile with -Xlint:unchecked for details. > [INFO] > [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) > @ cdk-silent --- > [INFO] Not copying test resources > [INFO] > [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ > cdk-silent --- > [INFO] Not compiling test sources > [INFO] > [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cdk-silent --- > [INFO] Tests are skipped. > [INFO] > [INFO] --- maven-jar-plugin:3.1.2:jar (default-jar) @ cdk-silent --- > [INFO] Building jar: /<<PKGBUILDDIR>>/base/silent/target/cdk-silent-2.3.jar > [INFO] > [INFO] --- maven-jar-plugin:3.1.2:test-jar (default) @ cdk-silent --- > [INFO] Skipping packaging of the test-jar > [INFO] > [INFO] -----------------< org.openscience.cdk:cdk-datadebug > >------------------ > [INFO] Building cdk-datadebug 2.3 > [12/60] > [INFO] --------------------------------[ jar > ]--------------------------------- > [INFO] > [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ > cdk-datadebug --- > [INFO] Using 'UTF-8' encoding to copy filtered resources. > [INFO] skip non existing resourceDirectory > /<<PKGBUILDDIR>>/base/datadebug/src/main/resources > [INFO] > [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ > cdk-datadebug --- > [INFO] Changes detected - recompiling the module! > [INFO] Compiling 37 source files to > /<<PKGBUILDDIR>>/base/datadebug/target/classes > [INFO] > /<<PKGBUILDDIR>>/base/datadebug/src/main/java/org/openscience/cdk/debug/DebugAtomContainer.java: > Some input files use or override a deprecated API. > [INFO] > /<<PKGBUILDDIR>>/base/datadebug/src/main/java/org/openscience/cdk/debug/DebugAtomContainer.java: > Recompile with -Xlint:deprecation for details. > [INFO] > [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) > @ cdk-datadebug --- > [INFO] Not copying test resources > [INFO] > [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ > cdk-datadebug --- > [INFO] Not compiling test sources > [INFO] > [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cdk-datadebug > --- > [INFO] Tests are skipped. > [INFO] > [INFO] --- maven-jar-plugin:3.1.2:jar (default-jar) @ cdk-datadebug --- > [INFO] Building jar: > /<<PKGBUILDDIR>>/base/datadebug/target/cdk-datadebug-2.3.jar > [INFO] > [INFO] --- maven-jar-plugin:3.1.2:test-jar (default) @ cdk-datadebug --- > [INFO] Skipping packaging of the test-jar > [INFO] > [INFO] ----------------< org.openscience.cdk:cdk-isomorphism > >----------------- > [INFO] Building cdk-isomorphism 2.3 > [13/60] > [INFO] --------------------------------[ jar > ]--------------------------------- > [INFO] > [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ > cdk-isomorphism --- > [INFO] Using 'UTF-8' encoding to copy filtered resources. > [INFO] skip non existing resourceDirectory > /<<PKGBUILDDIR>>/base/isomorphism/src/main/resources > [INFO] > [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ > cdk-isomorphism --- > [INFO] Changes detected - recompiling the module! > [INFO] Compiling 32 source files to > /<<PKGBUILDDIR>>/base/isomorphism/target/classes > [INFO] > /<<PKGBUILDDIR>>/base/isomorphism/src/main/java/org/openscience/cdk/isomorphism/matchers/QueryAtom.java: > Some input files use or override a deprecated API. > [INFO] > /<<PKGBUILDDIR>>/base/isomorphism/src/main/java/org/openscience/cdk/isomorphism/matchers/QueryAtom.java: > Recompile with -Xlint:deprecation for details. > [INFO] > /<<PKGBUILDDIR>>/base/isomorphism/src/main/java/org/openscience/cdk/isomorphism/matchers/QueryAtomContainer.java: > Some input files use unchecked or unsafe operations. > [INFO] > /<<PKGBUILDDIR>>/base/isomorphism/src/main/java/org/openscience/cdk/isomorphism/matchers/QueryAtomContainer.java: > Recompile with -Xlint:unchecked for details. > [INFO] ------------------------------------------------------------- > [ERROR] COMPILATION ERROR : > [INFO] ------------------------------------------------------------- > [ERROR] > /<<PKGBUILDDIR>>/base/isomorphism/src/main/java/org/openscience/cdk/isomorphism/QueryStereoFilter.java:[59,7] > org.openscience.cdk.isomorphism.QueryStereoFilter is not abstract and does > not override abstract method test(int[]) in java.util.function.Predicate > [ERROR] > /<<PKGBUILDDIR>>/base/isomorphism/src/main/java/org/openscience/cdk/isomorphism/UniqueBondMatches.java:[47,7] > org.openscience.cdk.isomorphism.UniqueBondMatches is not abstract and does > not override abstract method test(int[]) in java.util.function.Predicate > [ERROR] > /<<PKGBUILDDIR>>/base/isomorphism/src/main/java/org/openscience/cdk/isomorphism/StereoMatch.java:[58,7] > org.openscience.cdk.isomorphism.StereoMatch is not abstract and does not > override abstract method test(int[]) in java.util.function.Predicate > [ERROR] > /<<PKGBUILDDIR>>/base/isomorphism/src/main/java/org/openscience/cdk/isomorphism/ComponentFilter.java:[61,7] > org.openscience.cdk.isomorphism.ComponentFilter is not abstract and does not > override abstract method test(int[]) in java.util.function.Predicate > [ERROR] > /<<PKGBUILDDIR>>/base/isomorphism/src/main/java/org/openscience/cdk/isomorphism/AtomMapFilter.java:[69,7] > org.openscience.cdk.isomorphism.AtomMapFilter is not abstract and does not > override abstract method test(int[]) in java.util.function.Predicate > [ERROR] > /<<PKGBUILDDIR>>/base/isomorphism/src/main/java/org/openscience/cdk/isomorphism/UniqueAtomMatches.java:[47,7] > org.openscience.cdk.isomorphism.UniqueAtomMatches is not abstract and does > not override abstract method test(int[]) in java.util.function.Predicate > [INFO] 6 errors > [INFO] ------------------------------------------------------------- > [INFO] > ------------------------------------------------------------------------ > [INFO] Reactor Summary for cdk 2.3: > [INFO] > [INFO] cdk ................................................ SUCCESS [ 0.292 > s] > [INFO] cdk-base ........................................... SUCCESS [ 0.004 > s] > [INFO] cdk-interfaces ..................................... SUCCESS [ 1.235 > s] > [INFO] cdk-core ........................................... SUCCESS [ 1.513 > s] > [INFO] cdk-standard ....................................... SUCCESS [ 0.954 > s] > [INFO] cdk-atomtype ....................................... SUCCESS [ 0.110 > s] > [INFO] cdk-valencycheck ................................... SUCCESS [ 0.117 > s] > [INFO] cdk-misc ........................................... SUCCESS [ 0.002 > s] > [INFO] cdk-diff ........................................... SUCCESS [ 0.135 > s] > [INFO] cdk-data ........................................... SUCCESS [ 0.517 > s] > [INFO] cdk-silent ......................................... SUCCESS [ 0.444 > s] > [INFO] cdk-datadebug ...................................... SUCCESS [ 0.545 > s] > [INFO] cdk-isomorphism .................................... FAILURE [ 0.191 > s] > [INFO] cdk-dict ........................................... SKIPPED > [INFO] cdk-storage ........................................ SKIPPED > [INFO] cdk-ioformats ...................................... SKIPPED > [INFO] cdk-ctab ........................................... SKIPPED > [INFO] cdk-io ............................................. SKIPPED > [INFO] cdk-tool ........................................... SKIPPED > [INFO] cdk-formula ........................................ SKIPPED > [INFO] cdk-pdb ............................................ SKIPPED > [INFO] cdk-libiocml ....................................... SKIPPED > [INFO] cdk-smiles ......................................... SKIPPED > [INFO] cdk-extra .......................................... SKIPPED > [INFO] cdk-reaction ....................................... SKIPPED > [INFO] cdk-smarts ......................................... SKIPPED > [INFO] cdk-descriptor ..................................... SKIPPED > [INFO] cdk-fingerprint .................................... SKIPPED > [INFO] cdk-cip ............................................ SKIPPED > [INFO] cdk-signature ...................................... SKIPPED > [INFO] cdk-charges ........................................ SKIPPED > [INFO] cdk-forcefield ..................................... SKIPPED > [INFO] cdk-sdg ............................................ SKIPPED > [INFO] cdk-builder3dtools ................................. SKIPPED > [INFO] cdk-builder3d ...................................... SKIPPED > [INFO] cdk-qsar ........................................... SKIPPED > [INFO] cdk-display ........................................ SKIPPED > [INFO] cdk-render ......................................... SKIPPED > [INFO] cdk-inchi .......................................... SKIPPED > [INFO] cdk-qsaratomic ..................................... SKIPPED > [INFO] cdk-qsarbond ....................................... SKIPPED > [INFO] cdk-hash ........................................... SKIPPED > [INFO] cdk-fragment ....................................... SKIPPED > [INFO] cdk-qsarmolecular .................................. SKIPPED > [INFO] cdk-qsarcml ........................................ SKIPPED > [INFO] cdk-qsarprotein .................................... SKIPPED > [INFO] cdk-qsarsubstance .................................. SKIPPED > [INFO] cdk-renderbasic .................................... SKIPPED > [INFO] cdk-renderawt ...................................... SKIPPED > [INFO] cdk-renderextra .................................... SKIPPED > [INFO] cdk-control ........................................ SKIPPED > [INFO] cdk-log4j .......................................... SKIPPED > [INFO] cdk-libiomd ........................................ SKIPPED > [INFO] cdk-pdbcml ......................................... SKIPPED > [INFO] cdk-group .......................................... SKIPPED > [INFO] cdk-pcore .......................................... SKIPPED > [INFO] cdk-structgen ...................................... SKIPPED > [INFO] cdk-tautomer ....................................... SKIPPED > [INFO] cdk-model .......................................... SKIPPED > [INFO] cdk-app ............................................ SKIPPED > [INFO] > ------------------------------------------------------------------------ > [INFO] BUILD FAILURE > [INFO] > ------------------------------------------------------------------------ > [INFO] Total time: 6.408 s > [INFO] Finished at: 2020-06-21T07:29:04Z > [INFO] > ------------------------------------------------------------------------ > [ERROR] Failed to execute goal > org.apache.maven.plugins:maven-compiler-plugin:3.8.1:compile > (default-compile) on project cdk-isomorphism: Compilation failure: > Compilation failure: > [ERROR] > /<<PKGBUILDDIR>>/base/isomorphism/src/main/java/org/openscience/cdk/isomorphism/QueryStereoFilter.java:[59,7] > org.openscience.cdk.isomorphism.QueryStereoFilter is not abstract and does > not override abstract method test(int[]) in java.util.function.Predicate > [ERROR] > /<<PKGBUILDDIR>>/base/isomorphism/src/main/java/org/openscience/cdk/isomorphism/UniqueBondMatches.java:[47,7] > org.openscience.cdk.isomorphism.UniqueBondMatches is not abstract and does > not override abstract method test(int[]) in java.util.function.Predicate > [ERROR] > /<<PKGBUILDDIR>>/base/isomorphism/src/main/java/org/openscience/cdk/isomorphism/StereoMatch.java:[58,7] > org.openscience.cdk.isomorphism.StereoMatch is not abstract and does not > override abstract method test(int[]) in java.util.function.Predicate > [ERROR] > /<<PKGBUILDDIR>>/base/isomorphism/src/main/java/org/openscience/cdk/isomorphism/ComponentFilter.java:[61,7] > org.openscience.cdk.isomorphism.ComponentFilter is not abstract and does not > override abstract method test(int[]) in java.util.function.Predicate > [ERROR] > /<<PKGBUILDDIR>>/base/isomorphism/src/main/java/org/openscience/cdk/isomorphism/AtomMapFilter.java:[69,7] > org.openscience.cdk.isomorphism.AtomMapFilter is not abstract and does not > override abstract method test(int[]) in java.util.function.Predicate > [ERROR] > /<<PKGBUILDDIR>>/base/isomorphism/src/main/java/org/openscience/cdk/isomorphism/UniqueAtomMatches.java:[47,7] > org.openscience.cdk.isomorphism.UniqueAtomMatches is not abstract and does > not override abstract method test(int[]) in java.util.function.Predicate > [ERROR] -> [Help 1] > [ERROR] > [ERROR] To see the full stack trace of the errors, re-run Maven with the -e > switch. > [ERROR] Re-run Maven using the -X switch to enable full debug logging. > [ERROR] > [ERROR] For more information about the errors and possible solutions, please > read the following articles: > [ERROR] [Help 1] > http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException > [ERROR] > [ERROR] After correcting the problems, you can resume the build with the > command > [ERROR] mvn <args> -rf :cdk-isomorphism > dh_auto_build: error: /usr/lib/jvm/default-java/bin/java -noverify -cp > /usr/share/maven/boot/plexus-classworlds-2.x.jar > -Dmaven.home=/usr/share/maven > -Dmaven.multiModuleProjectDirectory=/<<PKGBUILDDIR>> > -Dclassworlds.conf=/etc/maven/m2-debian.conf > -Dproperties.file.manual=/<<PKGBUILDDIR>>/debian/maven.properties > org.codehaus.plexus.classworlds.launcher.Launcher > -s/etc/maven/settings-debian.xml -Ddebian.dir=/<<PKGBUILDDIR>>/debian > -Dmaven.repo.local=/<<PKGBUILDDIR>>/debian/maven-repo --batch-mode package > -DskipTests -Dnotimestamp=true -Dlocale=en_US returned exit code 1 > make: *** [debian/rules:4: build] Error 25 The full build log is available from: http://qa-logs.debian.net/2020/06/20/cdk_2.3-2_unstable.log A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! About the archive rebuild: The rebuild was done on EC2 VM instances from Amazon Web Services, using a clean, minimal and up-to-date chroot. Every failed build was retried once to eliminate random failures.
