Source: mothur Version: 1.44.1-1 Severity: serious Justification: FTBFS on amd64 Tags: bullseye sid ftbfs Usertags: ftbfs-20200620 ftbfs-bullseye
Hi, During a rebuild of all packages in sid, your package failed to build on amd64. Relevant part (hopefully): > g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong > -Wformat -Werror=format-security -O3 -std=c++11 -pthread > -DVERSION="\"1.44.1\"" -DUSE_READLINE -I. -I source/calculators/ -I > source/chimera/ -I source/classifier/ -I source/clearcut/ -I > source/commands/ -I source/communitytype/ -I source/datastructures/ -I > source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ > -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/boneh.o > source/calculators/boneh.cpp > In file included from source/datastructures/sabundvector.hpp:4, > from source/calculators/calculator.h:5, > from source/calculators/ace.h:16, > from source/calculators/ace.cpp:10: > source/datastructures/datavector.hpp:4:10: fatal error: mothurout.h: No such > file or directory > 4 | #include "mothurout.h" > | ^~~~~~~~~~~~~ > In file included from source/datastructures/sabundvector.hpp:4, > from source/calculators/calculator.h:5, > from source/calculators/accuracy.hpp:12, > from source/calculators/accuracy.cpp:9: > source/datastructures/datavector.hpp:4:10: fatal error: mothurout.h: No such > file or directory > 4 | #include "mothurout.h" > | ^~~~~~~~~~~~~ > compilation terminated. > In file included from source/datastructures/sabundvector.hpp:4, > from source/calculators/calculator.h:5, > from source/calculators/bergerparker.h:12, > from source/calculators/bergerparker.cpp:10: > source/datastructures/datavector.hpp:4:10: fatal error: mothurout.h: No such > file or directory > 4 | #include "mothurout.h" > | ^~~~~~~~~~~~~ > In file included from source/datastructures/sabundvector.hpp:4, > from source/calculators/calculator.h:5, > from source/calculators/boneh.h:13, > from source/calculators/boneh.cpp:10: > source/datastructures/datavector.hpp:4:10: fatal error: mothurout.h: No such > file or directory > 4 | #include "mothurout.h" > | ^~~~~~~~~~~~~ > compilation terminated. > compilation terminated. > compilation terminated. > make[2]: *** [Makefile:139: source/calculators/accuracy.o] Error 1 The full build log is available from: http://qa-logs.debian.net/2020/06/20/mothur_1.44.1-1_unstable.log A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! About the archive rebuild: The rebuild was done on EC2 VM instances from Amazon Web Services, using a clean, minimal and up-to-date chroot. Every failed build was retried once to eliminate random failures.
