Your message dated Wed, 22 Jul 2020 10:18:54 +0000 with message-id <e1jybpu-000d5m...@fasolo.debian.org> and subject line Bug#963288: fixed in mothur 1.44.2-1 has caused the Debian Bug report #963288, regarding mothur: FTBFS: source/datastructures/datavector.hpp:4:10: fatal error: mothurout.h: No such file or directory to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 963288: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=963288 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: mothur Version: 1.44.1-1 Severity: serious Justification: FTBFS on amd64 Tags: bullseye sid ftbfs Usertags: ftbfs-20200620 ftbfs-bullseye Hi, During a rebuild of all packages in sid, your package failed to build on amd64. Relevant part (hopefully): > g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong > -Wformat -Werror=format-security -O3 -std=c++11 -pthread > -DVERSION="\"1.44.1\"" -DUSE_READLINE -I. -I source/calculators/ -I > source/chimera/ -I source/classifier/ -I source/clearcut/ -I > source/commands/ -I source/communitytype/ -I source/datastructures/ -I > source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ > -Wdate-time -D_FORTIFY_SOURCE=2 -c -o source/calculators/boneh.o > source/calculators/boneh.cpp > In file included from source/datastructures/sabundvector.hpp:4, > from source/calculators/calculator.h:5, > from source/calculators/ace.h:16, > from source/calculators/ace.cpp:10: > source/datastructures/datavector.hpp:4:10: fatal error: mothurout.h: No such > file or directory > 4 | #include "mothurout.h" > | ^~~~~~~~~~~~~ > In file included from source/datastructures/sabundvector.hpp:4, > from source/calculators/calculator.h:5, > from source/calculators/accuracy.hpp:12, > from source/calculators/accuracy.cpp:9: > source/datastructures/datavector.hpp:4:10: fatal error: mothurout.h: No such > file or directory > 4 | #include "mothurout.h" > | ^~~~~~~~~~~~~ > compilation terminated. > In file included from source/datastructures/sabundvector.hpp:4, > from source/calculators/calculator.h:5, > from source/calculators/bergerparker.h:12, > from source/calculators/bergerparker.cpp:10: > source/datastructures/datavector.hpp:4:10: fatal error: mothurout.h: No such > file or directory > 4 | #include "mothurout.h" > | ^~~~~~~~~~~~~ > In file included from source/datastructures/sabundvector.hpp:4, > from source/calculators/calculator.h:5, > from source/calculators/boneh.h:13, > from source/calculators/boneh.cpp:10: > source/datastructures/datavector.hpp:4:10: fatal error: mothurout.h: No such > file or directory > 4 | #include "mothurout.h" > | ^~~~~~~~~~~~~ > compilation terminated. > compilation terminated. > compilation terminated. > make[2]: *** [Makefile:139: source/calculators/accuracy.o] Error 1 The full build log is available from: http://qa-logs.debian.net/2020/06/20/mothur_1.44.1-1_unstable.log A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! About the archive rebuild: The rebuild was done on EC2 VM instances from Amazon Web Services, using a clean, minimal and up-to-date chroot. Every failed build was retried once to eliminate random failures.
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--- Begin Message ---Source: mothur Source-Version: 1.44.2-1 Done: Andreas Tille <ti...@debian.org> We believe that the bug you reported is fixed in the latest version of mothur, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 963...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <ti...@debian.org> (supplier of updated mothur package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Wed, 22 Jul 2020 11:35:13 +0200 Source: mothur Architecture: source Version: 1.44.2-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Closes: 963288 Changes: mothur (1.44.2-1) unstable; urgency=medium . * New upstream version * debhelper-compat 13 (routine-update) * Add salsa-ci file (routine-update) * Set upstream metadata fields: Bug-Database, Bug-Submit. * Remove obsolete fields Contact, Name from debian/upstream/metadata (already present in machine-readable debian/copyright). * Fix include Closes: #963288 * Fix makefile * Do not build uchime explicitly in d/rules Checksums-Sha1: 1dd4a9686693c5b11f3b066ae1d993887276b888 2071 mothur_1.44.2-1.dsc ca0cbeb007051851cc4f9f6603268f84aa22206c 1606023 mothur_1.44.2.orig.tar.gz 6b18c0d3b947f06a959daf4817a0a36adaca1c46 20332 mothur_1.44.2-1.debian.tar.xz a38b9248fb2647252fa65519e3d013c563a33d2c 16999 mothur_1.44.2-1_source.buildinfo Checksums-Sha256: fc6963bf3dae5f1d4a77bad966b411e179c37a62c5e7cb1bd66e52c6d548dec2 2071 mothur_1.44.2-1.dsc a79f55655a9519b357aa764972df8c5f183063ca8e278b46a204f5a2703e3d45 1606023 mothur_1.44.2.orig.tar.gz ee0e303a998fc0fcd5307e1c69edb7a1bf22f6776240c98b41983025f22af959 20332 mothur_1.44.2-1.debian.tar.xz 9424aa7900a0df1c8a801281069e519fb2749c76bd4336342f0f961e672877ef 16999 mothur_1.44.2-1_source.buildinfo Files: 6aecf325fc7e83064377d6a7b7e32165 2071 science optional mothur_1.44.2-1.dsc b41cce5b89deb7119cbeccbbfa183e38 1606023 science optional mothur_1.44.2.orig.tar.gz 525aee85c62fca3490feab091e19e595 20332 science optional mothur_1.44.2-1.debian.tar.xz 465d2857a56ab38d86a12a2389711444 16999 science optional mothur_1.44.2-1_source.buildinfo -----BEGIN PGP SIGNATURE----- iQJCBAEBCAAsFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl8YDpcOHHRpbGxlYUBy a2kuZGUACgkQV4oElNHGRtHHXw//WK4MV3JILF/USsK61cQEpWL2Zy4vlyDQBMjs tVhpmtA26RJIQkCfNzGwARaZqh1QF//0imEIxVCcAy1f4nn9YI62rpVBwPiLXQhm GMmWrONYlA26pvQuvc9DdE6OK8TT8g/3vXpkz5w8QkUs4N6EmeS143wWS0FzjC0g TewMfLGvNvfR54XM+ZqHHJP0UoTikRJFHqp0QrEdAg3tnpKjAgQGuUULogEIoBbw XFQj81gyBEQrdSlcjiHlfL1DuqJ+ys+ZHUb3vVWZgSKDrUJI1JHsFMvqlj87oliI cuVSvPaYSonYiM+eAYRo8R29XJRsc11hPBUtDKMjrkkxmIUawytHeZZjA/Imjqed rpwk4VSoy0+KcouPkOH6uE8wKDiB0YcRnhFHwPkxxyDb3lsuT5VFXbW5N1mKVBjK rU3D/BFZCIdYLCIQHZi404uXXU/o6QAWiNFCe6St7y50IiSgwWmMT989km6Z6Mrt m3GIE0iPCHee/T9MoRZMr6XNMSbw7hVRl/JzR9t1RueDRCnMgIaTHthadNp99FCF EeLyvZhmxgNtJVeP+hYPAAYWdwFV0uI+reu4mWqyF5zpVra9hi8wh+hpvqdRCVTv JXKDg9i5o4WlkCWX55WD6KlbzgGZBu6fLg5fti+SJGKfmPwORBlVnZv4dokVPgkP uStxylc= =7wHD -----END PGP SIGNATURE-----
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