Your message dated Fri, 12 Jun 2020 17:49:28 +0000 with message-id <e1jjno0-000akc...@fasolo.debian.org> and subject line Bug#960756: fixed in python-biopython 1.77+dfsg-1 has caused the Debian Bug report #960756, regarding python-biopython FTBFS on 32bit: test_NCBI_BLAST_tools.BlastDB failures to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 960756: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=960756 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: python-biopython Version: 1.76+dfsg-2 Severity: serious Tags: ftbfs https://buildd.debian.org/status/package.php?p=python-biopython&suite=sid ... ====================================================================== FAIL: test_fasta_db_nucl (test_NCBI_BLAST_tools.BlastDB) Test makeblastdb wrapper with nucleotide database. ---------------------------------------------------------------------- Traceback (most recent call last): File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/Tests/test_NCBI_BLAST_tools.py", line 249, in test_fasta_db_nucl self.assertTrue(os.path.isfile("GenBank/NC_005816.fna.nhd")) AssertionError: False is not true ====================================================================== FAIL: test_fasta_db_prot (test_NCBI_BLAST_tools.BlastDB) Test makeblastdb wrapper with protein database. ---------------------------------------------------------------------- Traceback (most recent call last): File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/Tests/test_NCBI_BLAST_tools.py", line 208, in test_fasta_db_prot self.assertTrue(os.path.isfile("GenBank/NC_005816.faa.phd")) AssertionError: False is not true ---------------------------------------------------------------------- Ran 518 tests in 330.272 seconds FAILED (failures = 1) Skipping any tests requiring internet access Python version: 3.8.3 (default, May 14 2020, 11:03:12) [GCC 9.3.0] Operating system: posix linux E: pybuild pybuild:352: test: plugin custom failed with: exit code=1: set -e; \ mkdir -p /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/home; \ mkdir -p /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/Doc/examples; \ cp -a Doc/Tutorial.tex /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/Doc; \ cp -a Doc/Tutorial /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/Doc; \ cp -a Doc/examples /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/Doc; \ cp -a Tests /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build; \ cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/Tests; \ env DIALIGN2_DIR=/usr/share/dialign EMBOSS_ROOT=/usr/lib/emboss HOME=/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/home python3.8 run_tests.py --offline dh_auto_test: error: pybuild --test -i python{version} -p 3.8 --test --system=custom "--test-args=set -e; \\\ mkdir -p {build_dir}/home; \\\ mkdir -p {build_dir}/Doc/examples; \\\ cp -a Doc/Tutorial.tex {build_dir}/Doc; \\\ cp -a Doc/Tutorial {build_dir}/Doc; \\\ cp -a Doc/examples {build_dir}/Doc; \\\ cp -a Tests {build_dir}; \\\ cd {build_dir}/Tests; \\\ env DIALIGN2_DIR=/usr/share/dialign EMBOSS_ROOT=/usr/lib/emboss HOME={build_dir}/home {interpreter} run_tests.py --offline" returned exit code 13 make[1]: *** [debian/rules:83: override_dh_auto_test] Error 25
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--- Begin Message ---Source: python-biopython Source-Version: 1.77+dfsg-1 Done: Etienne Mollier <etienne.moll...@mailoo.org> We believe that the bug you reported is fixed in the latest version of python-biopython, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 960...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Etienne Mollier <etienne.moll...@mailoo.org> (supplier of updated python-biopython package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Thu, 11 Jun 2020 20:10:34 +0200 Source: python-biopython Architecture: source Version: 1.77+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Etienne Mollier <etienne.moll...@mailoo.org> Closes: 960756 Changes: python-biopython (1.77+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version. * Test makeblastdb using format version 4, this is to work around issues on 32 bits CPU architectures. Closes: #960756. . [ Steffen Moeller ] * Also clean .pygtex and .pygstyle files in Doc Checksums-Sha1: 0e79845905f208a231399f7c93cfeea687d8b8aa 2854 python-biopython_1.77+dfsg-1.dsc 2a612c22e096fadfd630ca5850fe6cb61cb8c64f 9796624 python-biopython_1.77+dfsg.orig.tar.xz 722201011e31d7d5f2ca4e5d78c86c27e3e8811b 15560 python-biopython_1.77+dfsg-1.debian.tar.xz e35e94cb25b7d40fcd487cb750f41b1e10133aa0 13016 python-biopython_1.77+dfsg-1_source.buildinfo Checksums-Sha256: 6521230aabf6f92593c610e8d2bf097dfeba5868bc06446b876c073aa0ab3959 2854 python-biopython_1.77+dfsg-1.dsc 8ae31a8b991666d0afc5e68414048ab6f1253cc6a9679fe7f86b0e2be7b92287 9796624 python-biopython_1.77+dfsg.orig.tar.xz b5ac6c823ecefb215eb5c368021584157b697d85abd178a9f52a061d0684674b 15560 python-biopython_1.77+dfsg-1.debian.tar.xz ea0d14744791e7ae9238d0163d9e92e0649f6ae5d19ad52e39ad0bfe9657ba43 13016 python-biopython_1.77+dfsg-1_source.buildinfo Files: e9cac93e9b7848e4a9a406ae4418963d 2854 python optional python-biopython_1.77+dfsg-1.dsc 7f22af307c92590e8618c2aa541a7d74 9796624 python optional python-biopython_1.77+dfsg.orig.tar.xz 94af557c59bf10741715319cace60540 15560 python optional python-biopython_1.77+dfsg-1.debian.tar.xz 7aed618be19ba42398ec2da2eb4b457d 13016 python optional python-biopython_1.77+dfsg-1_source.buildinfo -----BEGIN PGP SIGNATURE----- iQIzBAEBCAAdFiEEhMGXeonn7+0+XKYuL9i+2sAg7tEFAl7jurYACgkQL9i+2sAg 7tG27g//WxFus99uuyUCi5hKRvZJMoHQkbHrQ9a7ZAPOdPpobYE7ANKJQ27ye3Bk uavagWlheUnX1/z0MShi51SD39pOQ17WcRpi6Dv0sqQKcPS5Z0q5cGOdpsG//aFW BzMuFUBuhi7gwQotGGTTsLYt1SeQn2QOSXWoD9tmyBJay8s1RZ1cWzvSc5Ux3spk oAwFuachKRgIZBpuYTzqIJSUxUEdrSaasdlQjw1lKymtAISqL9hxK2xwdzmAdG7a 4qPcUF5HW7kXdLqd+56WoSHJLXwyp1NyJynzYT/GAo+ZQjwrv/AhUsDcPyeMJ39/ /o2GWGzzhhqWcE8p+8msyAoNNWt7qn2OWgK4yZp0XWyLxs90slVyera0sNcWrTjr xRGchT0CU05XCn2yz3/c4d9wg0F07OIA+TDzXQb7IGBfRyd4HNo548RBv/ion4ql jZIkcmRht2zGgMk0NSIxJXoVZvTHy9sDadQJ79Q3we3hRcYZmfeAr7a9vknMiLiP KQINdl1EZHlXsR6h5ujzJ6rKo9SaV/NC4LJRLDJoOi+dVFHhTJyX5UQBYFVU+qpi QUkNxCtjwgYWbAqShmPwclyFxIw71L4wpK4ftDAKjUgcdGo8IAACOJohZuml5Azh Yh9eoYs7EiNWadnY7KvkjspckS2aA5ikPR5ss1dsSwzntD4C0VU= =b+VO -----END PGP SIGNATURE-----
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