Your message dated Wed, 17 Jul 2019 15:21:11 +0000
with message-id <e1hnljz-0009by...@fasolo.debian.org>
and subject line Bug#932311: fixed in python-geneimpacts 0.3.7-2
has caused the Debian Bug report #932311,
regarding python-geneimpacts: FTBFS missing dependency to run testsuite
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
932311: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=932311
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: python-geneimpacts
Version: FTBFS missing dependency to run testsuite
Severity: serious
Tags: patch
Dear Maintainer,
python-geneimpacts currently fails to build in Sid with the following
error message:
I: pybuild base:217: python3.7 setup.py test
running test
Searching for nose
Note: Bypassing https://pypi.org/simple/nose/ (disallowed host; see
http://bit.ly/2hrImnY for details).
Couldn't find index page for 'nose' (maybe misspelled?)
Scanning index of all packages (this may take a while)
Note: Bypassing https://pypi.org/simple/ (disallowed host; see
http://bit.ly/2hrImnY for details).
No local packages or working download links found for nose
error: Could not find suitable distribution for
Requirement.parse('nose')
E: pybuild pybuild:341: test: plugin distutils failed with: exit code=1:
python3.7 setup.py test
Looks like this is due to python3-nose missing, it built successfully
after adding this dependency
(see the attached patch). I also took the liberty of adjusting the Salsa
links since the urls
they point to atm doesn't seem to work.
-- System Information:
Debian Release: bullseye/sid
APT prefers unstable
APT policy: (500, 'unstable')
Architecture: amd64 (x86_64)
Kernel: Linux 4.19.0-5-amd64 (SMP w/2 CPU cores)
Kernel taint flags: TAINT_CRAP
Locale: LANG=en_US.utf8, LC_CTYPE=en_US.utf8 (charmap=UTF-8),
LANGUAGE=en_US:en (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled
--
mvh / best regards
Hans Joachim Desserud
http://desserud.org
diff --git a/debian/control b/debian/control
index bacbd05..6effc7a 100644
--- a/debian/control
+++ b/debian/control
@@ -3,11 +3,15 @@ Section: science
Priority: optional
Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org>
Uploaders: Steffen Moeller <moel...@debian.org>
-Build-Depends: debhelper (>= 11), dh-python, python3-all, python3-setuptools
+Build-Depends: debhelper (>= 11),
+ dh-python,
+ python3-all,
+ python3-nose,
+ python3-setuptools
Standards-Version: 4.3.0
Homepage: https://github.com/brentp/geneimpacts
-Vcs-Browser: https://salsa.debian.org/med-team/geneimpacts
-Vcs-Git: https://salsa.debian.org/med-team/geneimpacts.git
+Vcs-Browser: https://salsa.debian.org/med-team/python-geneimpacts
+Vcs-Git: https://salsa.debian.org/med-team/python-geneimpacts.git
#Testsuite: autopkgtest-pkg-python
Package: python3-geneimpacts
--- End Message ---
--- Begin Message ---
Source: python-geneimpacts
Source-Version: 0.3.7-2
We believe that the bug you reported is fixed in the latest version of
python-geneimpacts, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 932...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <ti...@debian.org> (supplier of updated python-geneimpacts
package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Wed, 17 Jul 2019 16:34:01 +0200
Source: python-geneimpacts
Binary: python3-geneimpacts
Architecture: source
Version: 0.3.7-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
python3-geneimpacts - wraps command line tools to assess variants in gene
sequences
Closes: 932311
Changes:
python-geneimpacts (0.3.7-2) unstable; urgency=medium
.
* Team upload.
* debhelper 12
* Standards-Version: 4.4.0
* Remove trailing whitespace in debian/copyright
* Do not Recommend snpeff since this is not packaged yet
* Build-Depends: python3-nose
Closes: #932311
* Lintian prefers Section: python - leave source package in Section science
Checksums-Sha1:
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5275eebcb09a78eb260e782756a90b3f42384a48 2200
python-geneimpacts_0.3.7-2.debian.tar.xz
Checksums-Sha256:
85e54b06ab538da593e81de9eb3f00334cd89254e82c85224db87e537baa8f93 2124
python-geneimpacts_0.3.7-2.dsc
300e37242caf7302b57b533f626101780d82cbc322326ebaf73f74543ab0762b 2200
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Files:
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python-geneimpacts_0.3.7-2.dsc
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