Source: python-geneimpacts
Version: FTBFS missing dependency to run testsuite
Severity: serious
Tags: patch
Dear Maintainer,
python-geneimpacts currently fails to build in Sid with the following
error message:
I: pybuild base:217: python3.7 setup.py test
running test
Searching for nose
Note: Bypassing https://pypi.org/simple/nose/ (disallowed host; see
http://bit.ly/2hrImnY for details).
Couldn't find index page for 'nose' (maybe misspelled?)
Scanning index of all packages (this may take a while)
Note: Bypassing https://pypi.org/simple/ (disallowed host; see
http://bit.ly/2hrImnY for details).
No local packages or working download links found for nose
error: Could not find suitable distribution for
Requirement.parse('nose')
E: pybuild pybuild:341: test: plugin distutils failed with: exit code=1:
python3.7 setup.py test
Looks like this is due to python3-nose missing, it built successfully
after adding this dependency
(see the attached patch). I also took the liberty of adjusting the Salsa
links since the urls
they point to atm doesn't seem to work.
-- System Information:
Debian Release: bullseye/sid
APT prefers unstable
APT policy: (500, 'unstable')
Architecture: amd64 (x86_64)
Kernel: Linux 4.19.0-5-amd64 (SMP w/2 CPU cores)
Kernel taint flags: TAINT_CRAP
Locale: LANG=en_US.utf8, LC_CTYPE=en_US.utf8 (charmap=UTF-8),
LANGUAGE=en_US:en (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled
--
mvh / best regards
Hans Joachim Desserud
http://desserud.org
diff --git a/debian/control b/debian/control
index bacbd05..6effc7a 100644
--- a/debian/control
+++ b/debian/control
@@ -3,11 +3,15 @@ Section: science
Priority: optional
Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org>
Uploaders: Steffen Moeller <moel...@debian.org>
-Build-Depends: debhelper (>= 11), dh-python, python3-all, python3-setuptools
+Build-Depends: debhelper (>= 11),
+ dh-python,
+ python3-all,
+ python3-nose,
+ python3-setuptools
Standards-Version: 4.3.0
Homepage: https://github.com/brentp/geneimpacts
-Vcs-Browser: https://salsa.debian.org/med-team/geneimpacts
-Vcs-Git: https://salsa.debian.org/med-team/geneimpacts.git
+Vcs-Browser: https://salsa.debian.org/med-team/python-geneimpacts
+Vcs-Git: https://salsa.debian.org/med-team/python-geneimpacts.git
#Testsuite: autopkgtest-pkg-python
Package: python3-geneimpacts
