Hi James, On Mon, Nov 26, 2018 at 09:39:33AM +0000, James Bonfield wrote: > I looked at this and don't see test failures, only "build attempted". > Has it changed since this email?
The "Build-Attempted" fields are links for instance to https://buildd.debian.org/status/fetch.php?pkg=staden-io-lib&arch=arm64&ver=1.14.11-1&stamp=1540934378&raw=0 Just scroll to nearly end or seek for the strings mentioned below. Kind regards Andreas. > > and this is basically the failure. Do you have any idea how to fix this? > > > > ... > > FAIL: scram > > =========== > > > > Loading ce.fa > > Generating ce#sorted.sam > > Generating ce#unsorted.sam > > === testing ./data/c1#bounds.sam === > > ./scram.test: 27: [: ./data/c1#bounds.sam: unexpected operator > > ../progs/scramble ./data/c1#bounds.sam test.out/c1#bounds.sam > > ../progs/scramble -r ./data/c1.fa ./data/c1#bounds.sam > > test.out/c1#bounds.full.cram > > ../progs/scramble ./data/c1#bounds.sam > test.out/tmp.sam > > ../progs/scramble test.out/c1#bounds.full.cram > > > test.out/c1#bounds.full.sam > > ../progs/scramble -O bam test.out/c1#bounds.full.cram > > > test.out/c1#bounds.full.bam > > ../progs/scramble test.out/c1#bounds.full.bam test.out/tmp.sam > > corrupted size vs. prev_size > > Aborted > > FAIL scram.test (exit status: 1) > > I'm also struggling to find the "corrupted size vs. prev_size" error > message anywhere in the code, not even "prev_size". > > Googling for it I finally found it listed as an error in GNU malloc, > which possibly means there is a memory corruption. I will run through > the entire test harness using address sanitiser and if that doesn't > work with Valgrind. > > James > > -- > James Bonfield (j...@sanger.ac.uk) > The Sanger Institute, Hinxton, Cambs, CB10 1SA > > > -- > The Wellcome Sanger Institute is operated by Genome Research > Limited, a charity registered in England with number 1021457 and a > company registered in England with number 2742969, whose registered > office is 215 Euston Road, London, NW1 2BE. > -- http://fam-tille.de
