Control: tags -1 forwarded James Bonfield <j...@sanger.ac.uk> Hi James,
version 1.14.11 of staden-io-lib creates an error in the test suite for non x86 architectures. Here you have an easy overview what architectures are affected: https://buildd.debian.org/status/package.php?p=staden-io-lib&suite=sid and this is basically the failure. Do you have any idea how to fix this? ... FAIL: scram =========== Loading ce.fa Generating ce#sorted.sam Generating ce#unsorted.sam === testing ./data/c1#bounds.sam === ./scram.test: 27: [: ./data/c1#bounds.sam: unexpected operator ../progs/scramble ./data/c1#bounds.sam test.out/c1#bounds.sam ../progs/scramble -r ./data/c1.fa ./data/c1#bounds.sam test.out/c1#bounds.full.cram ../progs/scramble ./data/c1#bounds.sam > test.out/tmp.sam ../progs/scramble test.out/c1#bounds.full.cram > test.out/c1#bounds.full.sam ../progs/scramble -O bam test.out/c1#bounds.full.cram > test.out/c1#bounds.full.bam ../progs/scramble test.out/c1#bounds.full.bam test.out/tmp.sam corrupted size vs. prev_size Aborted FAIL scram.test (exit status: 1) FAIL: scram_mt ============== === testing ./data/c1#bounds.sam === ./scram.test: 27: [: ./data/c1#bounds.sam: unexpected operator ../progs/scramble -t4 ./data/c1#bounds.sam test.out/c1#bounds.sam ../progs/scramble -t4 -r ./data/c1.fa ./data/c1#bounds.sam test.out/c1#bounds.full.cram ../progs/scramble -t4 ./data/c1#bounds.sam > test.out/tmp.sam ../progs/scramble -t4 test.out/c1#bounds.full.cram > test.out/c1#bounds.full.sam ../progs/scramble -t4 -O bam test.out/c1#bounds.full.cram > test.out/c1#bounds.full.bam ../progs/scramble -t4 test.out/c1#bounds.full.bam test.out/tmp.sam corrupted size vs. prev_size Aborted FAIL scram_mt.test (exit status: 1) ============================================================================ Testsuite summary for io_lib 1.14.11 ============================================================================ # TOTAL: 9 # PASS: 7 # SKIP: 0 # XFAIL: 0 # FAIL: 2 # XPASS: 0 # ERROR: 0 ============================================================================ See tests/test-suite.log ============================================================================ make[4]: *** [Makefile:716: test-suite.log] Error 1 Kind regards Andreas. -- http://fam-tille.de
