Your message dated Mon, 26 Nov 2018 07:04:26 +0000
with message-id <e1grawu-0008yh...@fasolo.debian.org>
and subject line Bug#912113: fixed in harvest-tools 1.3-3
has caused the Debian Bug report #912113,
regarding harvest-tools: frequent parallel FTBFS
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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immediately.)
--
912113: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=912113
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: harvest-tools
Version: 1.3-2
Severity: serious
Tags: ftbfs patch
https://tests.reproducible-builds.org/debian/rb-pkg/unstable/arm64/harvest-tools.html
...
dh_auto_build
make -j8
make[1]: Entering directory '/build/1st/harvest-tools-1.3'
cd src; /usr/bin/protoc --cpp_out . harvest/pb/harvest.proto
cd src/harvest/capnp;export
PATH=/usr/bin/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games;capnp compile -I
/usr/include -oc++ harvest.capnp
cd src; /usr/bin/protoc --cpp_out . harvest/pb/harvest.proto
cd src/harvest/capnp;export
PATH=/usr/bin/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games;capnp compile -I
/usr/include -oc++ harvest.capnp
[libprotobuf WARNING google/protobuf/compiler/parser.cc:562] No syntax
specified for the proto file: harvest/pb/harvest.proto. Please use 'syntax =
"proto2";' or 'syntax = "proto3";' to specify a syntax version. (Defaulted to
proto2 syntax.)
[libprotobuf WARNING google/protobuf/compiler/parser.cc:562] No syntax
specified for the proto file: harvest/pb/harvest.proto. Please use 'syntax =
"proto2";' or 'syntax = "proto3";' to specify a syntax version. (Defaulted to
proto2 syntax.)
g++ -c -g -O2 -ffile-prefix-map=/build/1st/harvest-tools-1.3=.
-fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Isrc
-I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o
src/harvest/capnp/harvest.capnp.o src/harvest/capnp/harvest.capnp.c++
g++ -c -g -O2 -ffile-prefix-map=/build/1st/harvest-tools-1.3=.
-fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Isrc
-I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o
src/harvest/pb/harvest.pb.o src/harvest/pb/harvest.pb.cc
g++ -c -g -O2 -ffile-prefix-map=/build/1st/harvest-tools-1.3=.
-fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Isrc
-I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o
src/harvest/AnnotationList.o src/harvest/AnnotationList.cpp
g++ -c -g -O2 -ffile-prefix-map=/build/1st/harvest-tools-1.3=.
-fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Isrc
-I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o
src/harvest/harvest.o src/harvest/harvest.cpp
g++ -c -g -O2 -ffile-prefix-map=/build/1st/harvest-tools-1.3=.
-fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Isrc
-I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o
src/harvest/HarvestIO.o src/harvest/HarvestIO.cpp
g++ -c -g -O2 -ffile-prefix-map=/build/1st/harvest-tools-1.3=.
-fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Isrc
-I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o
src/harvest/LcbList.o src/harvest/LcbList.cpp
g++ -c -g -O2 -ffile-prefix-map=/build/1st/harvest-tools-1.3=.
-fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Isrc
-I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o
src/harvest/parse.o src/harvest/parse.cpp
g++ -c -g -O2 -ffile-prefix-map=/build/1st/harvest-tools-1.3=.
-fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Isrc
-I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o
src/harvest/PhylogenyTree.o src/harvest/PhylogenyTree.cpp
g++ -c -g -O2 -ffile-prefix-map=/build/1st/harvest-tools-1.3=.
-fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Isrc
-I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o
src/harvest/PhylogenyTreeNode.o src/harvest/PhylogenyTreeNode.cpp
src/harvest/capnp/harvest.capnp.c++:850:28: error: expected primary-expression
at end of input
8, 0, 0, 0, 0, 0, 0, 0,
^
src/harvest/capnp/harvest.capnp.c++:850:28: error: expected '}' at end of input
src/harvest/capnp/harvest.capnp.c++:719:3: note: to match this '{'
{ 0, 0, 0, 0, 5, 0, 6, 0,
^
src/harvest/capnp/harvest.capnp.c++:850:28: error: expected '}' at end of input
8, 0, 0, 0, 0, 0, 0, 0,
^
src/harvest/capnp/harvest.capnp.c++:718:64: note: to match this '{'
static const ::capnp::_::AlignedData<134> b_c4df8e4ba28721bc = {
^
src/harvest/capnp/harvest.capnp.c++:850:28: error: expected ',' or ';' at end
of input
8, 0, 0, 0, 0, 0, 0, 0,
^
src/harvest/capnp/harvest.capnp.c++:850:28: error: expected '}' at end of input
src/harvest/capnp/harvest.capnp.c++:7:19: note: to match this '{'
namespace schemas {
^
src/harvest/capnp/harvest.capnp.c++:850:28: error: expected '}' at end of input
8, 0, 0, 0, 0, 0, 0, 0,
^
src/harvest/capnp/harvest.capnp.c++:6:17: note: to match this '{'
namespace capnp {
^
make[1]: *** [Makefile:35: src/harvest/capnp/harvest.capnp.o] Error 1
Fix is attached.
Description: Fix a frequent parallel FTBFS
Author: Adrian Bunk <b...@debian.org>
--- harvest-tools-1.3.orig/Makefile.in
+++ harvest-tools-1.3/Makefile.in
@@ -37,10 +37,14 @@ harvesttools : $(OBJECTS)
%.o : %.cc
$(CXX) -c $(CXXFLAGS) $(CPPFLAGS) -o $@ $<
-src/harvest/pb/harvest.pb.cc src/harvest/pb/harvest.pb.h :
src/harvest/pb/harvest.proto
+src/harvest/pb/harvest.pb.cc : src/harvest/pb/harvest.pb.h
+
+src/harvest/pb/harvest.pb.h : src/harvest/pb/harvest.proto
cd src; @protobuf@/bin/protoc --cpp_out . harvest/pb/harvest.proto
-src/harvest/capnp/harvest.capnp.c++ src/harvest/capnp/harvest.capnp.h :
src/harvest/capnp/harvest.capnp
+src/harvest/capnp/harvest.capnp.c++ : src/harvest/capnp/harvest.capnp.h
+
+src/harvest/capnp/harvest.capnp.h : src/harvest/capnp/harvest.capnp
cd src/harvest/capnp;export PATH=@capnp@/bin/:${PATH};capnp compile -I
@capnp@/include -oc++ harvest.capnp
install : harvesttools
--- End Message ---
--- Begin Message ---
Source: harvest-tools
Source-Version: 1.3-3
We believe that the bug you reported is fixed in the latest version of
harvest-tools, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 912...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <ti...@debian.org> (supplier of updated harvest-tools package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Mon, 26 Nov 2018 07:48:51 +0100
Source: harvest-tools
Binary: harvest-tools
Architecture: source
Version: 1.3-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
harvest-tools - archiving and postprocessing for reference-compressed genomic
mul
Closes: 912113
Changes:
harvest-tools (1.3-3) unstable; urgency=medium
.
[ Jelmer Vernoo ]
* Trim trailing whitespace.
* Use secure copyright file specification URI.
.
[ Adrian Bunk ]
Fix a frequent parallel FTBFS. (Closes: #912113)
.
[ Andreas Tille ]
* Standards-Version: 4.2.1
Checksums-Sha1:
3dafda73d76c4d406d6404e43a4f73c10d059d64 2108 harvest-tools_1.3-3.dsc
f95950344baf779aca07c482e8f7ad621d25cc5d 4988 harvest-tools_1.3-3.debian.tar.xz
Checksums-Sha256:
3713218136ce7df9f5b7c624a173d60b65b01ad9371ce006767598030bf5defe 2108
harvest-tools_1.3-3.dsc
47c6f5826eab55e28e31142d7a445da3de2b44c7ce08ff5c50fa9611637a734a 4988
harvest-tools_1.3-3.debian.tar.xz
Files:
bbd473df69e5b678256cd0b34aeaf552 2108 science optional harvest-tools_1.3-3.dsc
11f9af715f00f1bfe02418ad81954340 4988 science optional
harvest-tools_1.3-3.debian.tar.xz
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