Your message dated Wed, 27 Jun 2018 20:33:09 +0000 with message-id <e1fyh7l-000h8y...@fasolo.debian.org> and subject line Bug#901807: fixed in libmath-gsl-perl 0.39-2 has caused the Debian Bug report #901807, regarding libmath-gsl-perl: incompatible with GSL >= 2.5 to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 901807: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=901807 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: libmath-gsl-perl Version: 0.39-1 Severity: serious Tags: upstream buster sid Justification: fails to build from source (but built successfully in the past) Forwarded: https://rt.cpan.org/Public/Bug/Display.html?id=123306 -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 As first seen on ci.d.n at https://ci.debian.net/data/packages/unstable/amd64/libm/libmath-gsl-perl/472600.log https://ci.debian.net/data/autopkgtest/unstable/amd64/libm/libmath-gsl-perl/472600/log.gz libmath-gsl-perl fails its autopkgtests and also fails to build from scratch: dh_auto_build perl Build Building Math-GSL VERSION MISMATCH: Let's hope for the best. Processing 2.2.1 XS files, GSL 2.5 (via gsl-config) at /usr [build warnings] dh_auto_test perl Build test --verbose 1 VERSION MISMATCH: Let's hope for the best. Processing 2.2.1 XS files, GSL 2.5 (via gsl-config) at /usr […] # Failed test 'use Math::GSL::Linalg;' # at t/00-load.t line 11. # Tried to use 'Math::GSL::Linalg'. # Error: Can't load '/build/libmath-gsl-perl-0.39/blib/arch/auto/Math/GSL/Linalg/Linalg.so' for module Math::GSL::Linalg: /build/libmath-gsl-perl-0.39/blib/arch/auto/Math/GSL/Linalg/Linalg.so: undefined symbol: gsl_linalg_hessenberg at /usr/lib/x86_64-linux-gnu/perl/5.26/DynaLoader.pm line 187. # at /build/libmath-gsl-perl-0.39/blib/lib/Math/GSL/Linalg.pm line 11. # Compilation failed in require at t/00-load.t line 11. # BEGIN failed--compilation aborted at t/00-load.t line 11. # Failed test 'use Math::GSL::Matrix;' # at t/00-load.t line 11. # Tried to use 'Math::GSL::Matrix'. # Error: Attempt to reload Math/GSL/Linalg.pm aborted. # Compilation failed in require at /build/libmath-gsl-perl-0.39/blib/lib/Math/GSL/Matrix.pm line 1207. # BEGIN failed--compilation aborted at /build/libmath-gsl-perl-0.39/blib/lib/Math/GSL/Matrix.pm line 1207. # Compilation failed in require at t/00-load.t line 11. # BEGIN failed--compilation aborted at t/00-load.t line 11. # Failed test 'use Math::GSL::MatrixComplex;' # at t/00-load.t line 11. # Tried to use 'Math::GSL::MatrixComplex'. # Error: Attempt to reload Math/GSL/Linalg.pm aborted. # Compilation failed in require at /build/libmath-gsl-perl-0.39/blib/lib/Math/GSL/MatrixComplex.pm line 607. # BEGIN failed--compilation aborted at /build/libmath-gsl-perl-0.39/blib/lib/Math/GSL/MatrixComplex.pm line 607. # Compilation failed in require at t/00-load.t line 11. # BEGIN failed--compilation aborted at t/00-load.t line 11. # Failed test 'use Math::GSL::SF;' # at t/00-load.t line 11. # Tried to use 'Math::GSL::SF'. # Error: Can't load '/build/libmath-gsl-perl-0.39/blib/arch/auto/Math/GSL/SF/SF.so' for module Math::GSL::SF: /build/libmath-gsl-perl-0.39/blib/arch/auto/Math/GSL/SF/SF.so: undefined symbol: gsl_sf_coupling_6j_INCORRECT_e at /usr/lib/x86_64-linux-gnu/perl/5.26/DynaLoader.pm line 187. # at /build/libmath-gsl-perl-0.39/blib/lib/Math/GSL/SF.pm line 11. # Compilation failed in require at t/00-load.t line 11. # BEGIN failed--compilation aborted at t/00-load.t line 11. # Testing Math::GSL 0.39 with GSL 2.2.1.1 on x86_64-linux-gnu-thread-multi, Perl (/usr/bin/perl) 5.026002 # Looks like you failed 4 tests of 52. t/00-load.t ............... ok 1 - use Math::GSL; ok 2 - use Math::GSL::BLAS; ok 3 - use Math::GSL::BSpline; ok 4 - use Math::GSL::CBLAS; ok 5 - use Math::GSL::CDF; ok 6 - use Math::GSL::Chebyshev; ok 7 - use Math::GSL::Combination; ok 8 - use Math::GSL::Complex; ok 9 - use Math::GSL::Const; ok 10 - use Math::GSL::DHT; ok 11 - use Math::GSL::Deriv; ok 12 - use Math::GSL::Diff; ok 13 - use Math::GSL::Eigen; ok 14 - use Math::GSL::Errno; ok 15 - use Math::GSL::FFT; ok 16 - use Math::GSL::Fit; ok 17 - use Math::GSL::Heapsort; ok 18 - use Math::GSL::Histogram; ok 19 - use Math::GSL::Histogram2D; ok 20 - use Math::GSL::IEEEUtils; ok 21 - use Math::GSL::Integration; ok 22 - use Math::GSL::Interp; not ok 23 - use Math::GSL::Linalg; ok 24 - use Math::GSL::Machine; not ok 25 - use Math::GSL::Matrix; not ok 26 - use Math::GSL::MatrixComplex; ok 27 - use Math::GSL::Min; ok 28 - use Math::GSL::Monte; ok 29 - use Math::GSL::Multimin; ok 30 - use Math::GSL::Multiroots; ok 31 - use Math::GSL::NTuple; ok 32 - use Math::GSL::ODEIV; ok 33 - use Math::GSL::Permutation; ok 34 - use Math::GSL::Poly; ok 35 - use Math::GSL::PowInt; ok 36 - use Math::GSL::QRNG; ok 37 - use Math::GSL::RNG; ok 38 - use Math::GSL::Randist; ok 39 - use Math::GSL::Roots; not ok 40 - use Math::GSL::SF; ok 41 - use Math::GSL::Siman; ok 42 - use Math::GSL::Sort; ok 43 - use Math::GSL::Spline; ok 44 - use Math::GSL::Statistics; ok 45 - use Math::GSL::Sum; ok 46 - use Math::GSL::Sys; ok 47 - use Math::GSL::Test; ok 48 - use Math::GSL::Vector; ok 49 - use Math::GSL::VectorComplex; ok 50 - use Math::GSL::Version; ok 51 - use Math::GSL::Wavelet; ok 52 - use Math::GSL::Wavelet2D; 1..52 Dubious, test returned 4 (wstat 1024, 0x400) Failed 4/52 subtests [and so on and so forth] The above mentioned upstream ticket also hints at an incompatibility with new GSL versions. Cheers, gregor -----BEGIN PGP SIGNATURE----- iQKTBAEBCgB9FiEE0eExbpOnYKgQTYX6uzpoAYZJqgYFAlsn0nJfFIAAAAAALgAo aXNzdWVyLWZwckBub3RhdGlvbnMub3BlbnBncC5maWZ0aGhvcnNlbWFuLm5ldEQx RTEzMTZFOTNBNzYwQTgxMDREODVGQUJCM0E2ODAxODY0OUFBMDYACgkQuzpoAYZJ qgb5SA/9HdI7M8WENDyOvdvYjob3dw8tZPA65w0ePs9kgSyIFNiyyvmFKp6SYjXk hrFqchzQ2RKRNMYAqRG8J4Hi4SKpwTD00NzppGYPDnysV48BxRp54OCCsNBZocgu I9fsf+XUru2Tyo394wKnunWgzEOKpYCqgRNfiLHH7y1umLSglbw5rBBgyhUx4srE Oj5Qicf+E7OdBmo13vMghUidNG+nwXZPWc6hAHcPcS8Z//SNGWlYowBiJaoF/9fh Y3v3V9oHYmsIPSFpe9silIKa9oLwX7h8hy1+ble6Ue42v2NJZAwpwsyuWVnTwn0R x9B1ZG5K+FGMX9ROx6KqUAEtoCh8aK4GDDT5CXqvT3bGR00XnsWDBQZ+vjJktPQh BX/W2YMVYkX1KeuCPj8rrgmiw0qpE5LEqjbY1N+cCxHpmRsmaJJ0ZIKsClWn8ZeR Lij25mS75IwCs4DBkQkFhnIhZQgFujQzX8zPPBcshIo036wYtGkADx4QfePR6y2m Qei+Xc0XycTN8QvuKyjWm37lZvCY3APWkctclFFTCfqa/tzfOxx5CfL651Aw40nA jlnx7F5cYxIIGxl/BsMwP21gNXqmXRbCHlwiVS6w+qCmAeQNsc6Tf/gX3kQskQmM pR/gBKFIWhdKlHUwNU1kVpNSNQC939F44xn1MiMgEC0FD1Hh6ug= =A1xu -----END PGP SIGNATURE-----
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--- Begin Message ---Source: libmath-gsl-perl Source-Version: 0.39-2 We believe that the bug you reported is fixed in the latest version of libmath-gsl-perl, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 901...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. gregor herrmann <gre...@debian.org> (supplier of updated libmath-gsl-perl package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Wed, 27 Jun 2018 22:05:11 +0200 Source: libmath-gsl-perl Binary: libmath-gsl-perl Architecture: source Version: 0.39-2 Distribution: unstable Urgency: medium Maintainer: Debian Perl Group <pkg-perl-maintain...@lists.alioth.debian.org> Changed-By: gregor herrmann <gre...@debian.org> Closes: 901807 Description: libmath-gsl-perl - interface to the GNU Scientific Library using SWIG Changes: libmath-gsl-perl (0.39-2) unstable; urgency=medium . * Team upload. . [ Salvatore Bonaccorso ] * Update Vcs-* headers for switch to salsa.debian.org . * Fix compatibility issues with gls 2.5 (closes: #901807): [ Niko Tyni ] - Add patch to fix a swig syntax error. - Add patch to disable deprecated function usage with gsl 2.5. [ gregor herrmann ] - Add patch to add leading ./ to filename which is called with do() because of the removal of '.' from @INC. - Add patch to force a swig rebuild. - debian/rules: clean all pre-built files before building. . [ gregor herrmann ] * Add more fixes to 0002-Fixed-spelling-errors-in-man.patch. * Install upstream examples. * Declare compliance with Debian Policy 4.1.4. * Bump debhelper compatibility level to 10. Checksums-Sha1: 8e1493f926a6fad22818bec077a66da377d24bb9 2362 libmath-gsl-perl_0.39-2.dsc 5a914e0fc837fb60b3e24b0894a55457d14f1073 16696 libmath-gsl-perl_0.39-2.debian.tar.xz Checksums-Sha256: 93a6d8e26e7a3d5fc3b2a700b75679fa95c3d89e2bb9ccd3c5b0c65e7579e44c 2362 libmath-gsl-perl_0.39-2.dsc f08d652ee69bdf0991a7b3943e8957206f93427ae2c83238463b8b935df6c3b6 16696 libmath-gsl-perl_0.39-2.debian.tar.xz Files: d1791eeddd5d19a2564cf1dc06fb9f49 2362 perl optional libmath-gsl-perl_0.39-2.dsc 86bcd2bdb053e730f9266e13a58ea320 16696 perl optional libmath-gsl-perl_0.39-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQKTBAEBCgB9FiEE0eExbpOnYKgQTYX6uzpoAYZJqgYFAlsz8BVfFIAAAAAALgAo aXNzdWVyLWZwckBub3RhdGlvbnMub3BlbnBncC5maWZ0aGhvcnNlbWFuLm5ldEQx RTEzMTZFOTNBNzYwQTgxMDREODVGQUJCM0E2ODAxODY0OUFBMDYACgkQuzpoAYZJ qgY8KA/+Pd+M6VhZuaRjw5AirhQFfkEdmx9mYqkSllmV//IaU+MVLChnJI2lbzp0 nAquciChCiZOuz7RpE81+c6QpZh7F3Shjg6rDFHAxasFDLIQuM5MnomifQbE20jh 7ImvwbPeaKJzSz3O0+d5r9/KJL2Gw31WYCw71BSzFgu3a/YH6sHgWdd7vWJGJi9m NVKnOLhR32GbO6k1WR3mGSEHDSoKloSGfIP7QifcTrfbTEB5jxi7Kpj/bdi8jslM z/Fs5Mpz13ZB9nsiKeaIB+A1z1lnTsJLpGkuoX3HbH7ahkuL6EaE1BmeJIN6pubg 1qAh9PN4REHRgrNHDd+WAalyRdixEyb0k0tevlDJ2W92xyHIEPDugrwsFf3FjkXw 4btSMeKIahoaHM0hQ7IMQtFInVcB1feU01IyF/5qWPzsjxHLlkotyjEczBp2beaC QKNvD59sxQTVyEZhjZKAdZbQWEqB6QAS8HMrAQsHDKZ+PWudyWZ0FUXbABYr7i1i nI7B8aDtUv/jF2ceCfit6O9xI/k5b5mzIhuky9WJnD/ShtQUpdEyBoIjRA+R7mPp 0cVVgwQuqUzyKV4aFe4DwHtOEE5ZGb146xSGdNBrCfVOQb1Q8lYnoQfauslrML/6 nK8oxbHLEcMzpwh976j1e5cXZXsQ6GSqQXxSfxzRHGCdiTl46Ag= =2br/ -----END PGP SIGNATURE-----
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