Your message dated Wed, 25 Apr 2018 04:19:50 +0000 with message-id <e1fbbui-0007qa...@fasolo.debian.org> and subject line Bug#896194: fixed in gromacs 2018.1-3 has caused the Debian Bug report #896194, regarding gromacs FTBFS: GpuUtilsUnitTests (Timeout) to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 896194: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=896194 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: gromacs Version: 2018.1-1 Severity: serious https://buildd.debian.org/status/package.php?p=gromacs ... Start 9: GpuUtilsUnitTests 9: Test command: /<<PKGBUILDDIR>>/build/openmpi/bin/gpu_utils-test "--gtest_output=xml:/<<PKGBUILDDIR>>/build/openmpi/Testing/Temporary/GpuUtilsUnitTests.xml" 9: Test timeout computed to be: 30 9: [==========] Running 30 tests from 6 test cases. 9: [----------] Global test environment set-up. 9: [----------] 7 tests from HostAllocatorTest/0, where TypeParam = int 9: [ RUN ] HostAllocatorTest/0.EmptyMemoryAlwaysWorks 9: [ OK ] HostAllocatorTest/0.EmptyMemoryAlwaysWorks (0 ms) 9: [ RUN ] HostAllocatorTest/0.VectorsWithDefaultHostAllocatorAlwaysWorks 9: [ OK ] HostAllocatorTest/0.VectorsWithDefaultHostAllocatorAlwaysWorks (0 ms) 9: [ RUN ] HostAllocatorTest/0.TransfersWithoutPinningWork 9: [ OK ] HostAllocatorTest/0.TransfersWithoutPinningWork (0 ms) 9: [ RUN ] HostAllocatorTest/0.FillInputAlsoWorksAfterCallingReserve 9: [ OK ] HostAllocatorTest/0.FillInputAlsoWorksAfterCallingReserve (0 ms) 9: [ RUN ] HostAllocatorTest/0.ChangingPinningPolicyRequiresCuda 9: 9: [WARNING] /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/src/gtest-death-test.cc:825:: Death tests use fork(), which is unsafe particularly in a threaded context. For this test, Google Test couldn't detect the number of threads. 9/24 Test #9: GpuUtilsUnitTests ................***Timeout 30.02 sec [==========] Running 30 tests from 6 test cases. [----------] Global test environment set-up. [----------] 7 tests from HostAllocatorTest/0, where TypeParam = int [ RUN ] HostAllocatorTest/0.EmptyMemoryAlwaysWorks [ OK ] HostAllocatorTest/0.EmptyMemoryAlwaysWorks (0 ms) [ RUN ] HostAllocatorTest/0.VectorsWithDefaultHostAllocatorAlwaysWorks [ OK ] HostAllocatorTest/0.VectorsWithDefaultHostAllocatorAlwaysWorks (0 ms) [ RUN ] HostAllocatorTest/0.TransfersWithoutPinningWork [ OK ] HostAllocatorTest/0.TransfersWithoutPinningWork (0 ms) [ RUN ] HostAllocatorTest/0.FillInputAlsoWorksAfterCallingReserve [ OK ] HostAllocatorTest/0.FillInputAlsoWorksAfterCallingReserve (0 ms) [ RUN ] HostAllocatorTest/0.ChangingPinningPolicyRequiresCuda [WARNING] /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/src/gtest-death-test.cc:825:: Death tests use fork(), which is unsafe particularly in a threaded context. For this test, Google Test couldn't detect the number of threads. ... The following tests FAILED: 9 - GpuUtilsUnitTests (Timeout) Errors while running CTest make: *** [debian/rules:172: build-openmpi] Error 8 This might be related to the recent updates of openmpi and mpich in unstable.
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--- Begin Message ---Source: gromacs Source-Version: 2018.1-3 We believe that the bug you reported is fixed in the latest version of gromacs, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 896...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Nicholas Breen <nbr...@debian.org> (supplier of updated gromacs package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Tue, 24 Apr 2018 20:01:16 -0700 Source: gromacs Binary: gromacs gromacs-data libgromacs3 libgromacs-dev gromacs-mpich gromacs-openmpi Architecture: source Version: 2018.1-3 Distribution: unstable Urgency: medium Maintainer: Debichem Team <debichem-de...@lists.alioth.debian.org> Changed-By: Nicholas Breen <nbr...@debian.org> Description: gromacs - Molecular dynamics simulator, with building and analysis tools gromacs-data - GROMACS molecular dynamics sim, data and documentation gromacs-mpich - Molecular dynamics sim, binaries for MPICH parallelization gromacs-openmpi - Molecular dynamics sim, binaries for OpenMPI parallelization libgromacs-dev - GROMACS molecular dynamics sim, development kit libgromacs3 - GROMACS molecular dynamics sim, shared libraries Closes: 896194 Changes: gromacs (2018.1-3) unstable; urgency=medium . * Exchange patch from 2018.1-2 for a GTEST_FILTER exclusion in rules. (Closes: #896194) * Bump Standards-Version to 4.1.4. Checksums-Sha1: 7cbdde84def37b9b0cae264ae82eb23981d8a1c4 2594 gromacs_2018.1-3.dsc 0384761407d9122aac7fd3b61b9b019b82e83db5 34528 gromacs_2018.1-3.debian.tar.xz 7d301893a76ca78f98b2c8b437f31a18360aaa9f 8586 gromacs_2018.1-3_source.buildinfo Checksums-Sha256: 0043d01c081963415ab41f5aad7bab5cf56ca04d17aa064b1bbca6e8e2def896 2594 gromacs_2018.1-3.dsc f9155d31d5b8192a4bf42ace07d0e2bbcd5caac637cf4d39b84e07ce4b77c941 34528 gromacs_2018.1-3.debian.tar.xz 2e8a8d3df405ee11b83065660ab957019a3f7cae157fefa8ea1ffa9586ecd97a 8586 gromacs_2018.1-3_source.buildinfo Files: 7a1095a332c19a128cf12707d5aef79f 2594 science optional gromacs_2018.1-3.dsc 47c047df9b8b9bcc70725f496ccaf529 34528 science optional gromacs_2018.1-3.debian.tar.xz f97e930857f70883ab681a723bdcc318 8586 science optional gromacs_2018.1-3_source.buildinfo -----BEGIN PGP SIGNATURE----- iQJGBAEBCAAwFiEEhD5fph5gYziYdtLl7kr9aexlEI8FAlrf/WYSHG5icmVlbkBk ZWJpYW4ub3JnAAoJEO5K/WnsZRCPHyUP/2R+9HK/YJ6XF9zQzJtfUnm8LHGb0qac s6LGfpup5rJTPUowBXeHbSIMI9a+MTwN+CxhhRVfLW3XeZqT44OtaphPaFGUnAKO 8EYxZ658YWSv+XmSnn+G70iGYjP2jHhNXsqRvm9d0zDPbDyx5fcnSHD32q/c/wgv D0p3Nw+IUEhx4Hqy8t6TimaylIo3zGPGHt+iRXf+n/YmmFqsJAlZ6TZbdltrufqS 7hCo0l2N4uv5KBjkms8pV/9j6aXwgw5hfzzpxmRG6ueGinOUn5wz9MbMW6fL3vhn PPBzy7mRuyJB7bq45THGEVubBEnCvhKcWnHUFZk+l/nxkvp/yowO/CSBgbIW2+qL V5YGGHTBSQEPoFUL0YRrTNN29k9zOvJ8kA8DfNa5lBg4dmN068cSA0DF5uqbkEra j+NclBgY2oO0vnIurmlNjGwDyfMlZnHmUElG7tb3kv1/nnfgUjZMJ8jSYjYeI0se UL9Hx9CzEjHAaGrquN9Hhq/vs7H9jSGdQnXMMY+TvTv6m+w0akdUqlUfvTJLn2FX +exb6jZWWBwn4oZTk3sfCVF9ixhHetW/HFojgk5jjev0QIqmlrNhUJIweOsiOwfD CuggpppP/U4+XcwJOu3LEAuy5G626NptXORkaQWw7Hy2v+3zWUOCMVdHnDKUpEd0 MsqwsTUkvoyO =LLiM -----END PGP SIGNATURE-----
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