Your message dated Sun, 22 Apr 2018 22:35:34 +0000 with message-id <e1fana2-000gwl...@fasolo.debian.org> and subject line Bug#896194: fixed in gromacs 2018.1-2 has caused the Debian Bug report #896194, regarding gromacs FTBFS: GpuUtilsUnitTests (Timeout) to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 896194: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=896194 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: gromacs Version: 2018.1-1 Severity: serious https://buildd.debian.org/status/package.php?p=gromacs ... Start 9: GpuUtilsUnitTests 9: Test command: /<<PKGBUILDDIR>>/build/openmpi/bin/gpu_utils-test "--gtest_output=xml:/<<PKGBUILDDIR>>/build/openmpi/Testing/Temporary/GpuUtilsUnitTests.xml" 9: Test timeout computed to be: 30 9: [==========] Running 30 tests from 6 test cases. 9: [----------] Global test environment set-up. 9: [----------] 7 tests from HostAllocatorTest/0, where TypeParam = int 9: [ RUN ] HostAllocatorTest/0.EmptyMemoryAlwaysWorks 9: [ OK ] HostAllocatorTest/0.EmptyMemoryAlwaysWorks (0 ms) 9: [ RUN ] HostAllocatorTest/0.VectorsWithDefaultHostAllocatorAlwaysWorks 9: [ OK ] HostAllocatorTest/0.VectorsWithDefaultHostAllocatorAlwaysWorks (0 ms) 9: [ RUN ] HostAllocatorTest/0.TransfersWithoutPinningWork 9: [ OK ] HostAllocatorTest/0.TransfersWithoutPinningWork (0 ms) 9: [ RUN ] HostAllocatorTest/0.FillInputAlsoWorksAfterCallingReserve 9: [ OK ] HostAllocatorTest/0.FillInputAlsoWorksAfterCallingReserve (0 ms) 9: [ RUN ] HostAllocatorTest/0.ChangingPinningPolicyRequiresCuda 9: 9: [WARNING] /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/src/gtest-death-test.cc:825:: Death tests use fork(), which is unsafe particularly in a threaded context. For this test, Google Test couldn't detect the number of threads. 9/24 Test #9: GpuUtilsUnitTests ................***Timeout 30.02 sec [==========] Running 30 tests from 6 test cases. [----------] Global test environment set-up. [----------] 7 tests from HostAllocatorTest/0, where TypeParam = int [ RUN ] HostAllocatorTest/0.EmptyMemoryAlwaysWorks [ OK ] HostAllocatorTest/0.EmptyMemoryAlwaysWorks (0 ms) [ RUN ] HostAllocatorTest/0.VectorsWithDefaultHostAllocatorAlwaysWorks [ OK ] HostAllocatorTest/0.VectorsWithDefaultHostAllocatorAlwaysWorks (0 ms) [ RUN ] HostAllocatorTest/0.TransfersWithoutPinningWork [ OK ] HostAllocatorTest/0.TransfersWithoutPinningWork (0 ms) [ RUN ] HostAllocatorTest/0.FillInputAlsoWorksAfterCallingReserve [ OK ] HostAllocatorTest/0.FillInputAlsoWorksAfterCallingReserve (0 ms) [ RUN ] HostAllocatorTest/0.ChangingPinningPolicyRequiresCuda [WARNING] /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/src/gtest-death-test.cc:825:: Death tests use fork(), which is unsafe particularly in a threaded context. For this test, Google Test couldn't detect the number of threads. ... The following tests FAILED: 9 - GpuUtilsUnitTests (Timeout) Errors while running CTest make: *** [debian/rules:172: build-openmpi] Error 8 This might be related to the recent updates of openmpi and mpich in unstable.
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--- Begin Message ---Source: gromacs Source-Version: 2018.1-2 We believe that the bug you reported is fixed in the latest version of gromacs, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 896...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Nicholas Breen <nbr...@debian.org> (supplier of updated gromacs package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Sun, 22 Apr 2018 14:34:48 -0700 Source: gromacs Binary: gromacs gromacs-data libgromacs3 libgromacs-dev gromacs-mpich gromacs-openmpi Architecture: source Version: 2018.1-2 Distribution: unstable Urgency: medium Maintainer: Debichem Team <debichem-de...@lists.alioth.debian.org> Changed-By: Nicholas Breen <nbr...@debian.org> Description: gromacs - Molecular dynamics simulator, with building and analysis tools gromacs-data - GROMACS molecular dynamics sim, data and documentation gromacs-mpich - Molecular dynamics sim, binaries for MPICH parallelization gromacs-openmpi - Molecular dynamics sim, binaries for OpenMPI parallelization libgromacs-dev - GROMACS molecular dynamics sim, development kit libgromacs3 - GROMACS molecular dynamics sim, shared libraries Closes: 896194 Changes: gromacs (2018.1-2) unstable; urgency=medium . * patches/openmpi-disable-gputest.patch: bypass one test on OpenMPI builds only, ChangingPinningPolicyRequiresCuda hangs and times out. (Closes: #896194) Checksums-Sha1: 300c74c7e41ac08f192c34d045e243c8624daa38 2594 gromacs_2018.1-2.dsc 7091b8618609ffb67d0e57673a98286132a2b0ab 34780 gromacs_2018.1-2.debian.tar.xz d17e905b0014ec49901b8f091baf31cffc89c5bb 8559 gromacs_2018.1-2_source.buildinfo Checksums-Sha256: e4c546d870aa55683bc81ccc2b1b29d5c41dd1471e04a53c37a447b7c0c63900 2594 gromacs_2018.1-2.dsc 3860fdcd6c85ad2a94c147da87fa2339bdabda7a0670312ff3195cd136d16671 34780 gromacs_2018.1-2.debian.tar.xz 516abb4fe9e0d79b5ff80a53128c6d20bf5af92f080f58210d16edc653a81ffe 8559 gromacs_2018.1-2_source.buildinfo Files: 4ae49d761eb577286d104a33f460af92 2594 science optional gromacs_2018.1-2.dsc 232e9fc6394b0d7041b255ee71f0990c 34780 science optional gromacs_2018.1-2.debian.tar.xz cc2088ba75880ac190e86bb0f85b80dd 8559 science optional gromacs_2018.1-2_source.buildinfo -----BEGIN PGP SIGNATURE----- iQJGBAEBCAAwFiEEhD5fph5gYziYdtLl7kr9aexlEI8FAlrdCqcSHG5icmVlbkBk ZWJpYW4ub3JnAAoJEO5K/WnsZRCPxsQP/02k4HUPx6qUJG8sEJaR3sq6n3A+sbzy 6xMbm0TIuAY3ctcN2HmuyTPsjMPi1UfOzAzcpE8kB9PEeRWqUwUY7WFf7xDQae6W QzXPgHEFuihVbeVYCtivI8gA4Sk17mBQidZADjjGQ28S6JdSGwqcENxN/kbOBLrZ vkCRo6kzH/iexpfzCMDsVhVJ9lv8hF4BsKvyo2FOBWZX5s26S4L4jQ7IIRc7QFgq 7lyPqSBxfZkEN0e70zqBTucN/XsQUnYSW4Byoc6N9zEQ52AhokaXMAA8OYt2nnDr AqoB674nZj59qIMMiYkXW0yfXsTjtVP9X6NufG3Xj55o6nvPQWhXbIWHXQlfQgsv pqvnzlyeaGlW2IWT3I3uNBulEcHfZLfqjQfdQHobIzAYGtxMeFR2znRBv242svcN Ok44Xegxdrjy2ypAd3MxZxqtpIprX/VIBZA+77N+uT5jlVB0ZUXsG4FfNHa1QqBV Xi6FsgFR/PfLbgBmpj29pVYDoCqRC3d2Ko3axlaF6bqESO3PO1J2oHtPAHiPssqA oQ0UzblMzXrkoJOxtsS8fxrVnozmOmx2oG8lDSyRU2ht99ZVYwFZNU4pEvM9T5+2 kSGaw3yYbgFrqIONBZC4JXYQaZCbgf415UMJM5VpSP8QHJcqjb8uULiJDIN87uOF KWSjzyUL3b/f =TweP -----END PGP SIGNATURE-----
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